Wall clock time and date at job start Mon Mar 30 2020 01:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47190 * 2 1 4 4 C 1.50693 * 109.47058 * 120.00237 * 2 1 3 5 5 H 1.08002 * 120.00331 * 114.37005 * 4 2 1 6 6 C 1.37885 * 120.00119 * 294.35814 * 4 2 1 7 7 N 1.31516 * 120.00168 * 156.60535 * 6 4 2 8 8 Si 1.86799 * 119.99974 * 336.88923 * 6 4 2 9 9 H 1.48495 * 109.47179 * 179.71887 * 8 6 4 10 10 H 1.48504 * 109.47000 * 299.71811 * 8 6 4 11 11 H 1.48500 * 109.47297 * 59.71926 * 8 6 4 12 12 N 1.46897 * 109.47069 * 240.00066 * 2 1 3 13 13 C 1.46910 * 110.99968 * 84.99944 * 12 2 1 14 14 C 1.52995 * 109.47174 * 180.02562 * 13 12 2 15 15 C 1.50700 * 109.47384 * 179.97438 * 14 13 12 16 16 C 1.39370 * 119.50511 * 269.72819 * 15 14 13 17 17 C 1.36089 * 120.98912 * 179.72751 * 16 15 14 18 18 C 1.40540 * 119.65352 * 0.56220 * 17 16 15 19 19 C 1.40539 * 121.28471 * 179.72601 * 18 17 16 20 20 C 1.36096 * 119.65128 * 180.02562 * 19 18 17 21 21 C 1.39367 * 120.98965 * 359.95118 * 20 19 18 22 22 C 1.36089 * 120.99325 * 0.02562 * 21 20 19 23 23 C 1.40544 * 119.65460 * 359.97438 * 22 21 20 24 24 C 1.36085 * 119.50083 * 89.99778 * 15 14 13 25 25 H 1.09003 * 109.46967 * 293.10580 * 1 2 3 26 26 H 1.09006 * 109.47378 * 53.10132 * 1 2 3 27 27 H 1.08996 * 109.47246 * 173.10534 * 1 2 3 28 28 H 0.97002 * 119.99516 * 355.21605 * 7 6 4 29 29 H 1.00899 * 110.99860 * 321.05226 * 12 2 1 30 30 H 1.09000 * 109.46893 * 300.00418 * 13 12 2 31 31 H 1.08997 * 109.46937 * 60.00212 * 13 12 2 32 32 H 1.09007 * 109.47226 * 300.00268 * 14 13 12 33 33 H 1.09008 * 109.47308 * 59.99536 * 14 13 12 34 34 H 1.08001 * 119.50580 * 359.97438 * 16 15 14 35 35 H 1.08001 * 120.17534 * 180.27822 * 17 16 15 36 36 H 1.07992 * 120.17433 * 0.02562 * 19 18 17 37 37 H 1.07998 * 119.50163 * 179.97438 * 20 19 18 38 38 H 1.08003 * 119.50615 * 180.02562 * 21 20 19 39 39 H 1.08004 * 120.17742 * 180.02562 * 22 21 20 40 40 H 1.08005 * 120.17949 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5762 -1.6385 1.1339 6 6 1.7978 -0.1755 2.4794 7 7 1.8025 -0.9538 3.5396 8 14 1.4655 1.6533 2.6648 9 1 1.2395 1.9726 4.0973 10 1 2.6336 2.4219 2.1647 11 1 0.2592 2.0194 1.8799 12 7 2.0196 -0.6925 -1.1994 13 6 2.0824 0.2227 -2.3469 14 6 2.5949 -0.5330 -3.5745 15 6 2.6588 0.4056 -4.7518 16 6 1.5504 0.5358 -5.5867 17 6 1.5731 1.3786 -6.6550 18 6 2.7339 2.1214 -6.9301 19 6 2.7969 2.9974 -8.0273 20 6 3.9382 3.7002 -8.2631 21 6 5.0484 3.5660 -7.4314 22 6 5.0237 2.7278 -6.3596 23 6 3.8627 1.9853 -6.0840 24 6 3.7997 1.1091 -4.9869 25 1 -0.3633 0.4033 0.9453 26 1 -0.3634 0.6170 -0.8219 27 1 -0.3633 -1.0202 -0.1234 28 1 1.9017 -1.9132 3.4364 29 1 1.4495 -1.4978 -1.4101 30 1 1.0870 0.6164 -2.5525 31 1 2.7588 1.0462 -2.1183 32 1 3.5903 -0.9272 -3.3692 33 1 1.9182 -1.3565 -3.8030 34 1 0.6588 -0.0378 -5.3805 35 1 0.7051 1.4726 -7.2907 36 1 1.9441 3.1121 -8.6799 37 1 3.9841 4.3723 -9.1072 38 1 5.9418 4.1357 -7.6406 39 1 5.8916 2.6342 -5.7234 40 1 4.6525 0.9944 -4.3342 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609030929.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:52 Heat of formation + Delta-G solvation = 28.979728 kcal Electronic energy + Delta-G solvation = -19138.529930 eV Core-core repulsion = 16303.080346 eV Total energy + Delta-G solvation = -2835.449583 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.48144 -37.41315 -36.08271 -33.43280 -32.64942 -31.63641 -29.82617 -29.14338 -26.71040 -24.71894 -23.49280 -22.88501 -22.04113 -21.10945 -19.91215 -17.47101 -17.37648 -16.98806 -16.12284 -14.98677 -14.72653 -14.65585 -14.14846 -13.96345 -13.65065 -13.54536 -13.42518 -13.15643 -12.71726 -12.32092 -12.14178 -11.89533 -11.72098 -11.55278 -11.26903 -11.04715 -10.93092 -10.72136 -10.63208 -10.38532 -10.04777 -10.02773 -9.72279 -9.01352 -8.59606 -8.14395 -7.96008 -7.41841 -6.40130 -3.96380 0.43847 0.90605 1.96322 2.87954 3.41058 3.46547 3.63357 4.01222 4.46121 4.54338 4.65729 4.71366 4.78767 4.94711 5.08419 5.17576 5.21588 5.25267 5.29473 5.44334 5.47523 5.63006 5.71471 5.82712 5.91676 5.97838 6.09896 6.16544 6.22912 6.28964 6.33207 6.36699 6.45849 6.47854 6.64338 6.68597 6.73557 6.88841 6.92573 7.21710 7.83553 8.30955 8.39351 8.49939 9.06688 9.67837 10.96810 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.029465 B = 0.003413 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.057780 B = 8202.171980 C = 8502.311115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.190 3.810 3 H 0.025 0.975 4 C -0.589 4.589 5 H 0.063 0.937 6 C 0.033 3.967 7 N -0.903 5.903 8 Si 1.035 2.965 9 H -0.285 1.285 10 H -0.284 1.284 11 H -0.280 1.280 12 N -0.676 5.676 13 C 0.064 3.936 14 C -0.082 4.082 15 C -0.067 4.067 16 C -0.106 4.106 17 C -0.110 4.110 18 C -0.058 4.058 19 C -0.106 4.106 20 C -0.123 4.123 21 C -0.122 4.122 22 C -0.104 4.104 23 C -0.048 4.048 24 C -0.106 4.106 25 H 0.056 0.944 26 H 0.019 0.981 27 H 0.043 0.957 28 H 0.269 0.731 29 H 0.328 0.672 30 H 0.019 0.981 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.127 0.873 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.928 7.278 -24.041 25.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.081 3.919 3 H 0.042 0.958 4 C -0.627 4.627 5 H 0.081 0.919 6 C -0.172 4.172 7 N -0.537 5.537 8 Si 0.864 3.136 9 H -0.211 1.211 10 H -0.210 1.210 11 H -0.206 1.206 12 N -0.305 5.305 13 C -0.066 4.066 14 C -0.120 4.120 15 C -0.067 4.067 16 C -0.124 4.124 17 C -0.128 4.128 18 C -0.058 4.058 19 C -0.124 4.124 20 C -0.141 4.141 21 C -0.140 4.140 22 C -0.122 4.122 23 C -0.048 4.048 24 C -0.124 4.124 25 H 0.075 0.925 26 H 0.038 0.962 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.144 0.856 30 H 0.037 0.963 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.145 0.855 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.336 8.545 -22.722 24.388 hybrid contribution -0.762 -1.027 -1.380 1.882 sum 1.574 7.519 -24.103 25.297 Atomic orbital electron populations 1.22824 1.01208 0.99677 0.99840 1.19481 0.88952 0.94448 0.89049 0.95764 1.21919 1.39647 1.10918 0.90227 0.91853 1.25636 0.93808 1.05601 0.92174 1.70846 1.44629 1.06281 1.31896 0.84169 0.77021 0.76441 0.76016 1.21069 1.21013 1.20650 1.60743 1.57943 1.08870 1.02950 1.21919 0.98501 0.95976 0.90233 1.20694 1.03232 0.96403 0.91656 1.19705 0.93431 0.97341 0.96251 1.20834 0.98190 0.98639 0.94740 1.20982 0.97015 0.96736 0.98092 1.18098 0.94022 0.97868 0.95816 1.21010 0.98310 0.96339 0.96762 1.20810 0.93524 0.99977 0.99806 1.20824 0.98570 0.99088 0.95492 1.21074 0.97187 0.96284 0.97682 1.18119 0.93796 0.97362 0.95514 1.20975 0.98489 0.96250 0.96671 0.92507 0.96243 0.93760 0.92144 0.85554 0.96286 0.91587 0.90044 0.91275 0.85962 0.85724 0.85827 0.86237 0.86154 0.85549 0.85295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.91 8.90 37.16 0.33 -3.58 16 2 C 0.19 4.58 2.17 -68.87 -0.15 4.43 16 3 H 0.02 0.61 6.37 -51.93 -0.33 0.28 16 4 C -0.59 -16.82 9.05 -34.44 -0.31 -17.13 16 5 H 0.06 1.97 8.06 -52.49 -0.42 1.55 16 6 C 0.03 0.97 5.19 -17.82 -0.09 0.88 16 7 N -0.90 -27.89 13.70 55.43 0.76 -27.13 16 8 Si 1.04 25.45 26.44 -169.99 -4.50 20.95 16 9 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.42 6.15 56.52 0.35 -6.07 16 12 N -0.68 -14.03 6.23 -107.95 -0.67 -14.70 16 13 C 0.06 1.09 5.47 -3.82 -0.02 1.07 16 14 C -0.08 -1.14 5.57 -27.89 -0.16 -1.29 16 15 C -0.07 -0.86 5.10 -104.97 -0.54 -1.40 16 16 C -0.11 -1.25 9.58 -39.93 -0.38 -1.64 16 17 C -0.11 -1.21 9.77 -39.49 -0.39 -1.60 16 18 C -0.06 -0.68 5.74 -106.83 -0.61 -1.30 16 19 C -0.11 -1.04 9.77 -39.48 -0.39 -1.43 16 20 C -0.12 -1.11 9.95 -39.93 -0.40 -1.51 16 21 C -0.12 -1.13 9.95 -39.93 -0.40 -1.53 16 22 C -0.10 -1.11 9.77 -39.48 -0.39 -1.49 16 23 C -0.05 -0.59 5.74 -106.83 -0.61 -1.20 16 24 C -0.11 -1.35 9.37 -39.49 -0.37 -1.72 16 25 H 0.06 1.33 5.48 -51.93 -0.28 1.04 16 26 H 0.02 0.37 7.64 -51.93 -0.40 -0.03 16 27 H 0.04 0.94 8.00 -51.93 -0.42 0.53 16 28 H 0.27 8.26 8.73 -40.82 -0.36 7.90 16 29 H 0.33 6.40 8.38 -39.29 -0.33 6.07 16 30 H 0.02 0.32 7.58 -51.93 -0.39 -0.07 16 31 H 0.07 1.19 8.05 -51.93 -0.42 0.77 16 32 H 0.08 1.15 8.07 -51.93 -0.42 0.73 16 33 H 0.07 0.89 8.08 -51.92 -0.42 0.47 16 34 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 36 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 38 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 39 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 40 H 0.13 1.51 8.06 -52.48 -0.42 1.08 16 LS Contribution 328.66 15.07 4.95 4.95 Total: -1.00 -31.31 328.66 -10.32 -41.63 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -6.00 Total: 4.74 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: -4.87 Total: -30.44 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: 0.09 Total: -41.83 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -4.50 Total: 20.95 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.31 -10.32 -41.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609030929.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.608 kcal (2) G-P(sol) polarization free energy of solvation -31.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds