Wall clock time and date at job start Mon Mar 30 2020 01:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47190 * 2 1 4 4 C 1.50693 * 109.47058 * 120.00237 * 2 1 3 5 5 H 1.08002 * 120.00331 * 114.37005 * 4 2 1 6 6 C 1.37885 * 120.00119 * 294.35814 * 4 2 1 7 7 N 1.31516 * 120.00168 * 156.60535 * 6 4 2 8 8 Si 1.86799 * 119.99974 * 336.88923 * 6 4 2 9 9 H 1.48495 * 109.47179 * 179.71887 * 8 6 4 10 10 H 1.48504 * 109.47000 * 299.71811 * 8 6 4 11 11 H 1.48500 * 109.47297 * 59.71926 * 8 6 4 12 12 N 1.46897 * 109.47069 * 240.00066 * 2 1 3 13 13 C 1.46910 * 110.99968 * 84.99944 * 12 2 1 14 14 C 1.52995 * 109.47174 * 180.02562 * 13 12 2 15 15 C 1.50700 * 109.47384 * 179.97438 * 14 13 12 16 16 C 1.39370 * 119.50511 * 269.72819 * 15 14 13 17 17 C 1.36089 * 120.98912 * 179.72751 * 16 15 14 18 18 C 1.40540 * 119.65352 * 0.56220 * 17 16 15 19 19 C 1.40539 * 121.28471 * 179.72601 * 18 17 16 20 20 C 1.36096 * 119.65128 * 180.02562 * 19 18 17 21 21 C 1.39367 * 120.98965 * 359.95118 * 20 19 18 22 22 C 1.36089 * 120.99325 * 0.02562 * 21 20 19 23 23 C 1.40544 * 119.65460 * 359.97438 * 22 21 20 24 24 C 1.36085 * 119.50083 * 89.99778 * 15 14 13 25 25 H 1.09003 * 109.46967 * 293.10580 * 1 2 3 26 26 H 1.09006 * 109.47378 * 53.10132 * 1 2 3 27 27 H 1.08996 * 109.47246 * 173.10534 * 1 2 3 28 28 H 0.97002 * 119.99516 * 355.21605 * 7 6 4 29 29 H 1.00899 * 110.99860 * 321.05226 * 12 2 1 30 30 H 1.09000 * 109.46893 * 300.00418 * 13 12 2 31 31 H 1.08997 * 109.46937 * 60.00212 * 13 12 2 32 32 H 1.09007 * 109.47226 * 300.00268 * 14 13 12 33 33 H 1.09008 * 109.47308 * 59.99536 * 14 13 12 34 34 H 1.08001 * 119.50580 * 359.97438 * 16 15 14 35 35 H 1.08001 * 120.17534 * 180.27822 * 17 16 15 36 36 H 1.07992 * 120.17433 * 0.02562 * 19 18 17 37 37 H 1.07998 * 119.50163 * 179.97438 * 20 19 18 38 38 H 1.08003 * 119.50615 * 180.02562 * 21 20 19 39 39 H 1.08004 * 120.17742 * 180.02562 * 22 21 20 40 40 H 1.08005 * 120.17949 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5762 -1.6385 1.1339 6 6 1.7978 -0.1755 2.4794 7 7 1.8025 -0.9538 3.5396 8 14 1.4655 1.6533 2.6648 9 1 1.2395 1.9726 4.0973 10 1 2.6336 2.4219 2.1647 11 1 0.2592 2.0194 1.8799 12 7 2.0196 -0.6925 -1.1994 13 6 2.0824 0.2227 -2.3469 14 6 2.5949 -0.5330 -3.5745 15 6 2.6588 0.4056 -4.7518 16 6 1.5504 0.5358 -5.5867 17 6 1.5731 1.3786 -6.6550 18 6 2.7339 2.1214 -6.9301 19 6 2.7969 2.9974 -8.0273 20 6 3.9382 3.7002 -8.2631 21 6 5.0484 3.5660 -7.4314 22 6 5.0237 2.7278 -6.3596 23 6 3.8627 1.9853 -6.0840 24 6 3.7997 1.1091 -4.9869 25 1 -0.3633 0.4033 0.9453 26 1 -0.3634 0.6170 -0.8219 27 1 -0.3633 -1.0202 -0.1234 28 1 1.9017 -1.9132 3.4364 29 1 1.4495 -1.4978 -1.4101 30 1 1.0870 0.6164 -2.5525 31 1 2.7588 1.0462 -2.1183 32 1 3.5903 -0.9272 -3.3692 33 1 1.9182 -1.3565 -3.8030 34 1 0.6588 -0.0378 -5.3805 35 1 0.7051 1.4726 -7.2907 36 1 1.9441 3.1121 -8.6799 37 1 3.9841 4.3723 -9.1072 38 1 5.9418 4.1357 -7.6406 39 1 5.8916 2.6342 -5.7234 40 1 4.6525 0.9944 -4.3342 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609030929.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:52 Heat of formation + Delta-G solvation = 11.064579 kcal Electronic energy + Delta-G solvation = -19139.306789 eV Core-core repulsion = 16303.080346 eV Total energy + Delta-G solvation = -2836.226442 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.28941 -38.57913 -37.45990 -34.98705 -33.86430 -32.98369 -30.96419 -30.21473 -27.96616 -26.77844 -24.40434 -23.95999 -22.83276 -22.21518 -21.82681 -19.57571 -18.21422 -17.78307 -17.07247 -16.37649 -16.14930 -15.67864 -15.57319 -15.13465 -15.09968 -14.56587 -14.36053 -14.22282 -14.03803 -13.84268 -13.62090 -13.31543 -13.15463 -12.84673 -12.58723 -12.40085 -12.06065 -11.91859 -11.85789 -11.76099 -11.68419 -11.55920 -11.16012 -10.86044 -10.37130 -9.43530 -9.12986 -8.77179 -8.67896 -6.28503 -0.35887 0.08161 1.14733 1.44996 1.51752 1.71429 2.07576 2.49833 3.02734 3.17759 3.44744 3.70594 3.94282 4.00725 4.07687 4.13135 4.27426 4.33170 4.39022 4.46454 4.49731 4.50566 4.60725 4.66192 4.68970 4.77031 4.91904 4.94953 5.04246 5.05845 5.19589 5.22233 5.35160 5.37097 5.43142 5.58766 5.66350 5.74839 5.87774 5.95515 6.10453 6.13121 6.42217 6.71493 6.78468 7.45562 8.64194 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.029465 B = 0.003413 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.057780 B = 8202.171980 C = 8502.311115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.191 3.809 3 H 0.023 0.977 4 C -0.595 4.595 5 H 0.021 0.979 6 C -0.016 4.016 7 N -0.935 5.935 8 Si 1.077 2.923 9 H -0.286 1.286 10 H -0.270 1.270 11 H -0.249 1.249 12 N -0.689 5.689 13 C 0.070 3.930 14 C -0.070 4.070 15 C -0.079 4.079 16 C -0.121 4.121 17 C -0.107 4.107 18 C -0.078 4.078 19 C -0.113 4.113 20 C -0.124 4.124 21 C -0.120 4.120 22 C -0.125 4.125 23 C -0.069 4.069 24 C -0.119 4.119 25 H 0.044 0.956 26 H 0.050 0.950 27 H 0.045 0.955 28 H 0.254 0.746 29 H 0.334 0.666 30 H 0.028 0.972 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.136 0.864 35 H 0.151 0.849 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.145 0.855 39 H 0.135 0.865 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.062 9.554 -26.831 28.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.081 3.919 3 H 0.041 0.959 4 C -0.633 4.633 5 H 0.040 0.960 6 C -0.215 4.215 7 N -0.570 5.570 8 Si 0.899 3.101 9 H -0.212 1.212 10 H -0.195 1.195 11 H -0.173 1.173 12 N -0.319 5.319 13 C -0.060 4.060 14 C -0.107 4.107 15 C -0.080 4.080 16 C -0.138 4.138 17 C -0.125 4.125 18 C -0.078 4.078 19 C -0.131 4.131 20 C -0.142 4.142 21 C -0.138 4.138 22 C -0.142 4.142 23 C -0.069 4.069 24 C -0.137 4.137 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.152 0.848 30 H 0.046 0.954 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.153 0.847 35 H 0.169 0.831 36 H 0.166 0.834 37 H 0.166 0.834 38 H 0.163 0.837 39 H 0.153 0.847 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.472 10.806 -25.548 27.779 hybrid contribution -0.389 -1.760 -0.641 1.913 sum 1.083 9.046 -26.189 27.729 Atomic orbital electron populations 1.22659 0.99281 1.00469 1.00405 1.19300 0.90248 0.93742 0.88590 0.95896 1.22135 1.38902 1.09604 0.92693 0.96027 1.27041 0.93206 1.09326 0.91942 1.70970 1.47455 1.05619 1.32963 0.83634 0.78703 0.71342 0.76459 1.21222 1.19526 1.17325 1.60558 1.58162 1.09728 1.03465 1.21898 0.98801 0.95305 0.89951 1.20520 1.02832 0.96607 0.90770 1.19645 0.94242 0.97695 0.96392 1.20997 0.98287 0.99464 0.95097 1.21301 0.97619 0.95725 0.97858 1.18441 0.94127 0.98656 0.96546 1.21341 0.99578 0.95754 0.96421 1.21220 0.92949 0.99771 1.00277 1.21204 0.99678 0.98269 0.94623 1.21291 0.97204 0.96958 0.98792 1.18362 0.94927 0.97851 0.95757 1.21086 0.98610 0.96801 0.97248 0.93745 0.93094 0.93599 0.93747 0.84829 0.95416 0.92787 0.90847 0.90113 0.84653 0.83130 0.83411 0.83375 0.83727 0.84719 0.85464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.15 8.90 71.98 0.64 -6.51 16 2 C 0.19 9.07 2.17 44.17 0.10 9.17 16 3 H 0.02 1.11 6.37 -2.38 -0.02 1.10 16 4 C -0.60 -34.70 9.05 25.60 0.23 -34.47 16 5 H 0.02 1.40 8.06 -2.91 -0.02 1.37 16 6 C -0.02 -0.96 5.19 84.66 0.44 -0.52 16 7 N -0.93 -59.34 13.70 21.45 0.29 -59.05 16 8 Si 1.08 50.70 26.44 68.60 1.81 52.51 16 9 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 11 H -0.25 -10.43 6.15 99.48 0.61 -9.82 16 12 N -0.69 -28.34 6.23 -495.45 -3.09 -31.42 16 13 C 0.07 2.32 5.47 86.30 0.47 2.79 16 14 C -0.07 -1.88 5.57 29.85 0.17 -1.72 16 15 C -0.08 -2.00 5.10 -20.09 -0.10 -2.10 16 16 C -0.12 -2.66 9.58 22.04 0.21 -2.45 16 17 C -0.11 -2.14 9.77 22.33 0.22 -1.92 16 18 C -0.08 -1.69 5.74 -21.30 -0.12 -1.81 16 19 C -0.11 -1.90 9.77 22.33 0.22 -1.68 16 20 C -0.12 -1.85 9.95 22.04 0.22 -1.63 16 21 C -0.12 -1.94 9.95 22.04 0.22 -1.72 16 22 C -0.12 -2.51 9.77 22.33 0.22 -2.29 16 23 C -0.07 -1.65 5.74 -21.29 -0.12 -1.77 16 24 C -0.12 -3.03 9.37 22.33 0.21 -2.82 16 25 H 0.04 1.97 5.48 -2.39 -0.01 1.96 16 26 H 0.05 1.83 7.64 -2.38 -0.02 1.81 16 27 H 0.04 1.89 8.00 -2.39 -0.02 1.87 16 28 H 0.25 16.33 8.73 -92.71 -0.81 15.53 16 29 H 0.33 12.89 8.38 -89.69 -0.75 12.13 16 30 H 0.03 0.88 7.58 -2.39 -0.02 0.86 16 31 H 0.05 1.91 8.05 -2.39 -0.02 1.89 16 32 H 0.07 2.07 8.07 -2.38 -0.02 2.06 16 33 H 0.08 1.97 8.08 -2.38 -0.02 1.95 16 34 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 35 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 36 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 37 H 0.15 1.31 8.06 -2.91 -0.02 1.28 16 38 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 39 H 0.13 2.31 8.06 -2.91 -0.02 2.29 16 40 H 0.13 3.08 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -68.83 328.66 2.37 -66.46 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 0.14 Total: 22.95 kcal Atomic # 6 Polarization: -54.67 SS G_CDS: 3.21 Total: -51.45 kcal Atomic # 7 Polarization: -87.68 SS G_CDS: -2.79 Total: -90.47 kcal Atomic # 14 Polarization: 50.70 SS G_CDS: 1.81 Total: 52.51 kcal Total: -68.83 2.37 -66.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609030929.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.529 kcal (2) G-P(sol) polarization free energy of solvation -68.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds