Wall clock time and date at job start Mon Mar 30 2020 01:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81408 * 103.00039 * 2 1 4 4 H 1.09000 * 110.05299 * 305.03260 * 3 2 1 5 5 C 1.54267 * 110.03142 * 66.45234 * 3 2 1 6 6 C 1.54889 * 104.31061 * 142.96217 * 5 3 2 7 7 C 1.54895 * 102.74930 * 321.98880 * 6 5 3 8 8 H 1.08995 * 110.48883 * 279.13086 * 7 6 5 9 9 N 1.46902 * 110.48372 * 156.61874 * 7 6 5 10 10 C 1.46904 * 110.99762 * 185.40693 * 9 7 6 11 11 C 1.46895 * 110.99812 * 61.46035 * 9 7 6 12 12 C 1.53002 * 109.46826 * 196.18755 * 11 9 7 13 13 C 1.50696 * 115.55433 * 40.00816 * 12 11 9 14 14 H 1.08001 * 119.99833 * 265.65097 * 13 12 11 15 15 C 1.37872 * 120.00179 * 85.64755 * 13 12 11 16 16 N 1.31517 * 119.99887 * 4.50260 * 15 13 12 17 17 Si 1.86802 * 120.00087 * 184.49416 * 15 13 12 18 18 H 1.48503 * 109.46731 * 60.00755 * 17 15 13 19 19 H 1.48497 * 109.47007 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47537 * 300.00281 * 17 15 13 21 21 C 1.52999 * 117.49580 * 254.29810 * 12 11 9 22 22 C 1.53000 * 60.00317 * 252.51269 * 21 12 11 23 23 C 1.54216 * 110.14072 * 183.47866 * 3 2 1 24 24 H 1.09005 * 109.46911 * 60.00069 * 1 2 3 25 25 H 1.08999 * 109.46942 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47109 * 300.00487 * 1 2 3 27 27 H 1.08994 * 110.48857 * 24.21721 * 5 3 2 28 28 H 1.08999 * 110.48377 * 261.70198 * 5 3 2 29 29 H 1.09003 * 110.75521 * 80.30230 * 6 5 3 30 30 H 1.08996 * 110.75714 * 203.67575 * 6 5 3 31 31 H 1.09008 * 109.46984 * 64.25509 * 10 9 7 32 32 H 1.08998 * 109.47356 * 184.25510 * 10 9 7 33 33 H 1.08997 * 109.47381 * 304.26003 * 10 9 7 34 34 H 1.08998 * 109.47142 * 316.18156 * 11 9 7 35 35 H 1.09003 * 109.47399 * 76.18541 * 11 9 7 36 36 H 0.97001 * 119.99383 * 185.00793 * 16 15 13 37 37 H 1.08997 * 117.50269 * 359.97438 * 21 12 11 38 38 H 1.09001 * 117.49893 * 145.02305 * 21 12 11 39 39 H 1.09002 * 117.49934 * 252.51293 * 22 21 12 40 40 H 1.08996 * 117.51994 * 107.48334 * 22 21 12 41 41 H 1.09003 * 110.00542 * 121.44592 * 23 3 2 42 42 H 1.08996 * 110.02700 * 0.03673 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 1 1.7335 2.2640 -0.8384 5 6 1.7768 2.4127 1.3287 6 6 2.8867 3.4462 1.6434 7 6 4.1740 2.7143 1.1892 8 1 4.5055 2.0141 1.9559 9 7 5.2360 3.6828 0.8853 10 6 6.4190 3.0103 0.3318 11 6 5.5865 4.4701 2.0748 12 6 6.3762 5.7102 1.6510 13 6 5.8922 6.3921 0.3974 14 1 6.3377 6.1489 -0.5560 15 6 4.8807 7.3263 0.4674 16 7 4.3990 7.6875 1.6366 17 14 4.1946 8.0792 -1.0985 18 1 3.6333 7.0067 -1.9586 19 1 3.1240 9.0488 -0.7536 20 1 5.2812 8.7810 -1.8278 21 6 7.8820 5.7154 1.9222 22 6 6.9509 6.5946 2.7595 23 6 3.7497 1.9599 -0.0879 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.7198 1.6622 2.1169 28 1 0.8150 2.9110 1.2072 29 1 2.7383 4.3598 1.0677 30 1 2.9216 3.6625 2.7111 31 1 6.1637 2.5552 -0.6253 32 1 7.2164 3.7391 0.1864 33 1 6.7546 2.2376 1.0234 34 1 4.6755 4.7776 2.5884 35 1 6.1948 3.8636 2.7458 36 1 3.6395 8.2891 1.6833 37 1 8.3099 4.8357 2.4029 38 1 8.5229 6.2120 1.1937 39 1 6.9791 7.6697 2.5817 40 1 6.7659 6.2933 3.7905 41 1 4.0013 2.5484 -0.9701 42 1 4.2461 0.9905 -0.1312 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687957521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:29 Heat of formation + Delta-G solvation = 22.308118 kcal Electronic energy + Delta-G solvation = -19523.179714 eV Core-core repulsion = 16822.884779 eV Total energy + Delta-G solvation = -2700.294935 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.64731 -36.58464 -34.03917 -31.72166 -29.22569 -28.85315 -27.44701 -26.46229 -25.19502 -22.74119 -20.98988 -20.42806 -19.31832 -18.85968 -16.50945 -15.98646 -15.65456 -14.98781 -14.53075 -14.29654 -13.93894 -13.63291 -13.45515 -13.32043 -13.05755 -12.96721 -12.35862 -11.89657 -11.80051 -11.50470 -11.28716 -10.97524 -10.83864 -10.76770 -10.62530 -10.55757 -10.43109 -10.37536 -10.31806 -9.96991 -9.75702 -9.29366 -8.84916 -8.20881 -7.91776 -7.68990 -7.32803 -5.85399 -3.85670 1.71189 2.56423 3.40268 3.44387 3.48658 4.52044 4.58083 4.68976 4.78962 5.03074 5.03874 5.36551 5.41691 5.47811 5.55419 5.57420 5.62186 5.69259 5.79673 5.90973 5.99832 6.02447 6.08212 6.20574 6.30581 6.33337 6.38092 6.48949 6.56560 6.64505 6.65565 6.81191 6.82645 7.04989 7.20214 7.50761 7.62590 7.98251 8.05686 8.12180 8.64049 9.10082 9.75903 11.24299 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020251 B = 0.005754 C = 0.005042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.348587 B = 4865.407309 C = 5552.305173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.274 6.274 3 C -0.047 4.047 4 H 0.088 0.912 5 C -0.119 4.119 6 C -0.108 4.108 7 C 0.084 3.916 8 H 0.034 0.966 9 N -0.501 5.501 10 C 0.032 3.968 11 C 0.102 3.898 12 C 0.051 3.949 13 C -0.452 4.452 14 H 0.054 0.946 15 C 0.072 3.928 16 N -0.889 5.889 17 Si 0.881 3.119 18 H -0.277 1.277 19 H -0.292 1.292 20 H -0.281 1.281 21 C -0.221 4.221 22 C -0.152 4.152 23 C -0.092 4.092 24 H 0.074 0.926 25 H 0.095 0.905 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.006 0.994 34 H 0.072 0.928 35 H -0.001 1.001 36 H 0.255 0.745 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.057 0.943 41 H 0.089 0.911 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.387 -12.140 -0.783 13.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.047 6.047 3 C -0.176 4.176 4 H 0.106 0.894 5 C -0.159 4.159 6 C -0.147 4.147 7 C -0.025 4.025 8 H 0.052 0.948 9 N -0.224 5.224 10 C -0.116 4.116 11 C -0.025 4.025 12 C 0.051 3.949 13 C -0.490 4.490 14 H 0.073 0.927 15 C -0.129 4.129 16 N -0.527 5.527 17 Si 0.710 3.290 18 H -0.203 1.203 19 H -0.218 1.218 20 H -0.207 1.207 21 C -0.258 4.258 22 C -0.190 4.190 23 C -0.131 4.131 24 H 0.093 0.907 25 H 0.114 0.886 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.024 0.976 34 H 0.090 0.910 35 H 0.017 0.983 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.076 0.924 41 H 0.108 0.892 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.004 -12.546 -1.082 13.550 hybrid contribution -1.055 0.857 -0.195 1.373 sum -6.059 -11.688 -1.277 13.227 Atomic orbital electron populations 1.23327 0.94865 1.05914 1.04849 1.86816 1.06888 1.13049 1.97907 1.23879 1.00699 0.91631 1.01383 0.89362 1.22745 0.99150 0.98716 0.95321 1.22515 0.92403 0.98443 1.01338 1.22398 0.93010 0.92589 0.94543 0.94782 1.61920 1.07639 1.21556 1.31309 1.22304 0.93962 0.97235 0.98118 1.21688 0.99033 0.93239 0.88551 1.18844 0.87463 0.92812 0.95810 1.20101 1.18557 1.19081 0.91257 0.92746 1.24818 0.97051 0.95831 0.95208 1.70000 1.24547 1.35364 1.22815 0.86845 0.78689 0.78886 0.84594 1.20308 1.21769 1.20694 1.23093 0.96340 1.01584 1.04787 1.22470 1.04396 0.97831 0.94337 1.22065 0.90905 0.99904 1.00183 0.90739 0.88601 0.90554 0.90789 0.91650 0.89251 0.91607 0.92713 0.90645 0.97599 0.90955 0.98266 0.93492 0.92326 0.90727 0.89731 0.92448 0.89222 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 10.61 101.05 1.07 -0.06 16 2 S -0.27 -3.44 21.36 -107.50 -2.30 -5.74 16 3 C -0.05 -0.63 3.44 -25.43 -0.09 -0.72 16 4 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 5 C -0.12 -1.60 6.19 -25.07 -0.16 -1.75 16 6 C -0.11 -1.78 5.32 -24.74 -0.13 -1.91 16 7 C 0.08 1.41 2.57 -66.05 -0.17 1.24 16 8 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 9 N -0.50 -9.88 3.87 -232.88 -0.90 -10.78 16 10 C 0.03 0.58 9.11 60.07 0.55 1.12 16 11 C 0.10 2.22 4.93 -3.83 -0.02 2.20 16 12 C 0.05 1.23 1.01 -155.66 -0.16 1.07 16 13 C -0.45 -11.95 8.17 -34.44 -0.28 -12.23 16 14 H 0.05 1.47 7.82 -52.49 -0.41 1.06 16 15 C 0.07 1.93 5.43 -17.82 -0.10 1.84 16 16 N -0.89 -24.74 12.62 55.43 0.70 -24.04 16 17 Si 0.88 21.25 29.54 -169.99 -5.02 16.23 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 C -0.22 -4.81 9.29 -26.73 -0.25 -5.06 16 22 C -0.15 -3.59 9.14 -26.73 -0.24 -3.83 16 23 C -0.09 -1.37 5.05 -25.43 -0.13 -1.50 16 24 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16 25 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 26 H 0.08 0.67 8.12 -51.92 -0.42 0.25 16 27 H 0.07 0.95 7.81 -51.93 -0.41 0.54 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 30 H 0.07 1.09 7.58 -51.93 -0.39 0.69 16 31 H 0.05 0.89 7.04 -51.92 -0.37 0.52 16 32 H 0.07 1.45 6.81 -51.93 -0.35 1.10 16 33 H 0.01 0.09 8.14 -51.93 -0.42 -0.33 16 34 H 0.07 1.67 6.40 -51.93 -0.33 1.34 16 35 H 0.00 -0.02 7.86 -51.93 -0.41 -0.42 16 36 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 37 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 38 H 0.07 1.63 8.14 -51.93 -0.42 1.20 16 39 H 0.08 2.16 8.14 -51.93 -0.42 1.74 16 40 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 41 H 0.09 1.44 7.63 -51.93 -0.40 1.04 16 42 H 0.07 0.95 7.61 -51.93 -0.40 0.56 16 LS Contribution 341.45 15.07 5.15 5.15 Total: -1.00 -27.29 341.45 -10.14 -37.43 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -7.66 Total: 1.33 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: -0.10 Total: -19.58 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: -0.20 Total: -34.82 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -3.44 SS G_CDS: -2.30 Total: -5.74 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -27.29 -10.14 -37.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687957521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.739 kcal (2) G-P(sol) polarization free energy of solvation -27.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds