Wall clock time and date at job start Mon Mar 30 2020 01:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81408 * 103.00039 * 2 1 4 4 H 1.09000 * 110.05299 * 305.03260 * 3 2 1 5 5 C 1.54267 * 110.03142 * 66.45234 * 3 2 1 6 6 C 1.54889 * 104.31061 * 142.96217 * 5 3 2 7 7 C 1.54895 * 102.74930 * 321.98880 * 6 5 3 8 8 H 1.08995 * 110.48883 * 279.13086 * 7 6 5 9 9 N 1.46902 * 110.48372 * 156.61874 * 7 6 5 10 10 C 1.46904 * 110.99762 * 185.40693 * 9 7 6 11 11 C 1.46895 * 110.99812 * 61.46035 * 9 7 6 12 12 C 1.53002 * 109.46826 * 196.18755 * 11 9 7 13 13 C 1.50696 * 115.55433 * 40.00816 * 12 11 9 14 14 H 1.08001 * 119.99833 * 265.65097 * 13 12 11 15 15 C 1.37872 * 120.00179 * 85.64755 * 13 12 11 16 16 N 1.31517 * 119.99887 * 4.50260 * 15 13 12 17 17 Si 1.86802 * 120.00087 * 184.49416 * 15 13 12 18 18 H 1.48503 * 109.46731 * 60.00755 * 17 15 13 19 19 H 1.48497 * 109.47007 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47537 * 300.00281 * 17 15 13 21 21 C 1.52999 * 117.49580 * 254.29810 * 12 11 9 22 22 C 1.53000 * 60.00317 * 252.51269 * 21 12 11 23 23 C 1.54216 * 110.14072 * 183.47866 * 3 2 1 24 24 H 1.09005 * 109.46911 * 60.00069 * 1 2 3 25 25 H 1.08999 * 109.46942 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47109 * 300.00487 * 1 2 3 27 27 H 1.08994 * 110.48857 * 24.21721 * 5 3 2 28 28 H 1.08999 * 110.48377 * 261.70198 * 5 3 2 29 29 H 1.09003 * 110.75521 * 80.30230 * 6 5 3 30 30 H 1.08996 * 110.75714 * 203.67575 * 6 5 3 31 31 H 1.09008 * 109.46984 * 64.25509 * 10 9 7 32 32 H 1.08998 * 109.47356 * 184.25510 * 10 9 7 33 33 H 1.08997 * 109.47381 * 304.26003 * 10 9 7 34 34 H 1.08998 * 109.47142 * 316.18156 * 11 9 7 35 35 H 1.09003 * 109.47399 * 76.18541 * 11 9 7 36 36 H 0.97001 * 119.99383 * 185.00793 * 16 15 13 37 37 H 1.08997 * 117.50269 * 359.97438 * 21 12 11 38 38 H 1.09001 * 117.49893 * 145.02305 * 21 12 11 39 39 H 1.09002 * 117.49934 * 252.51293 * 22 21 12 40 40 H 1.08996 * 117.51994 * 107.48334 * 22 21 12 41 41 H 1.09003 * 110.00542 * 121.44592 * 23 3 2 42 42 H 1.08996 * 110.02700 * 0.03673 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 1 1.7335 2.2640 -0.8384 5 6 1.7768 2.4127 1.3287 6 6 2.8867 3.4462 1.6434 7 6 4.1740 2.7143 1.1892 8 1 4.5055 2.0141 1.9559 9 7 5.2360 3.6828 0.8853 10 6 6.4190 3.0103 0.3318 11 6 5.5865 4.4701 2.0748 12 6 6.3762 5.7102 1.6510 13 6 5.8922 6.3921 0.3974 14 1 6.3377 6.1489 -0.5560 15 6 4.8807 7.3263 0.4674 16 7 4.3990 7.6875 1.6366 17 14 4.1946 8.0792 -1.0985 18 1 3.6333 7.0067 -1.9586 19 1 3.1240 9.0488 -0.7536 20 1 5.2812 8.7810 -1.8278 21 6 7.8820 5.7154 1.9222 22 6 6.9509 6.5946 2.7595 23 6 3.7497 1.9599 -0.0879 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.7198 1.6622 2.1169 28 1 0.8150 2.9110 1.2072 29 1 2.7383 4.3598 1.0677 30 1 2.9216 3.6625 2.7111 31 1 6.1637 2.5552 -0.6253 32 1 7.2164 3.7391 0.1864 33 1 6.7546 2.2376 1.0234 34 1 4.6755 4.7776 2.5884 35 1 6.1948 3.8636 2.7458 36 1 3.6395 8.2891 1.6833 37 1 8.3099 4.8357 2.4029 38 1 8.5229 6.2120 1.1937 39 1 6.9791 7.6697 2.5817 40 1 6.7659 6.2933 3.7905 41 1 4.0013 2.5484 -0.9701 42 1 4.2461 0.9905 -0.1312 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687957521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:29 Heat of formation + Delta-G solvation = 9.503877 kcal Electronic energy + Delta-G solvation = -19523.734948 eV Core-core repulsion = 16822.884779 eV Total energy + Delta-G solvation = -2700.850168 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.05881 -38.25085 -35.52890 -33.77826 -30.22637 -29.95664 -28.68644 -28.01370 -27.17756 -24.24300 -22.82549 -21.63248 -20.74302 -20.65143 -17.89697 -17.49874 -17.09046 -16.52813 -16.17802 -15.78022 -15.42397 -14.96045 -14.64931 -14.48456 -14.26539 -14.21888 -13.94857 -13.33213 -13.26439 -12.91211 -12.86135 -12.74785 -12.60234 -12.33037 -12.10723 -12.01025 -11.98796 -11.80196 -11.70527 -11.59963 -11.13473 -10.81149 -10.74331 -10.20515 -9.79250 -8.84280 -8.64642 -7.92940 -5.96672 0.77886 1.46022 1.47148 1.53527 1.66179 2.54435 3.13989 3.37775 3.49415 3.59388 3.62176 4.19063 4.30881 4.33593 4.35964 4.39055 4.43290 4.46474 4.51494 4.59338 4.63087 4.67359 4.74947 4.80366 4.85916 4.89313 4.94190 5.02904 5.03707 5.09018 5.20546 5.22838 5.28175 5.35364 5.43316 5.70983 5.74482 5.94396 6.41106 6.58442 6.67515 7.03365 7.66508 9.15872 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020251 B = 0.005754 C = 0.005042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.348587 B = 4865.407309 C = 5552.305173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.297 6.297 3 C -0.043 4.043 4 H 0.089 0.911 5 C -0.107 4.107 6 C -0.106 4.106 7 C 0.085 3.915 8 H 0.039 0.961 9 N -0.521 5.521 10 C 0.036 3.964 11 C 0.116 3.884 12 C 0.030 3.970 13 C -0.455 4.455 14 H 0.043 0.957 15 C 0.031 3.969 16 N -0.913 5.913 17 Si 0.931 3.069 18 H -0.275 1.275 19 H -0.292 1.292 20 H -0.280 1.280 21 C -0.196 4.196 22 C -0.160 4.160 23 C -0.084 4.084 24 H 0.082 0.918 25 H 0.112 0.888 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.020 0.980 34 H 0.051 0.949 35 H 0.009 0.991 36 H 0.253 0.747 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.063 -13.891 -1.218 15.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.070 6.070 3 C -0.172 4.172 4 H 0.108 0.892 5 C -0.146 4.146 6 C -0.145 4.145 7 C -0.025 4.025 8 H 0.057 0.943 9 N -0.245 5.245 10 C -0.112 4.112 11 C -0.012 4.012 12 C 0.030 3.970 13 C -0.493 4.493 14 H 0.061 0.939 15 C -0.167 4.167 16 N -0.553 5.553 17 Si 0.759 3.241 18 H -0.201 1.201 19 H -0.218 1.218 20 H -0.205 1.205 21 C -0.233 4.233 22 C -0.199 4.199 23 C -0.123 4.123 24 H 0.101 0.899 25 H 0.131 0.869 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.039 0.961 34 H 0.069 0.931 35 H 0.027 0.973 36 H 0.062 0.938 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.670 -14.304 -1.529 15.463 hybrid contribution -0.837 1.371 -0.064 1.607 sum -6.507 -12.933 -1.593 14.565 Atomic orbital electron populations 1.23419 0.91704 1.07307 1.05682 1.86888 1.10368 1.11789 1.97969 1.23740 0.99495 0.92635 1.01309 0.89247 1.22669 0.98440 0.97922 0.95606 1.22406 0.93905 0.97939 1.00287 1.22446 0.92126 0.92175 0.95704 0.94315 1.61846 1.08974 1.23013 1.30626 1.22264 0.92857 0.96959 0.99095 1.21404 0.97714 0.92783 0.89321 1.18971 0.89249 0.93743 0.95069 1.20265 1.18307 1.18945 0.91800 0.93889 1.25351 0.97581 0.96469 0.97303 1.70098 1.24910 1.36104 1.24162 0.86044 0.78009 0.78116 0.81908 1.20102 1.21776 1.20534 1.23055 0.95071 1.01534 1.03618 1.22359 1.05961 0.96500 0.95032 1.21953 0.92271 0.99619 0.98439 0.89919 0.86921 0.89733 0.89758 0.90379 0.92671 0.92259 0.91277 0.92287 0.96133 0.93087 0.97279 0.93841 0.89809 0.90937 0.92376 0.91422 0.90543 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.75 10.61 113.37 1.20 -0.55 16 2 S -0.30 -6.77 21.36 -56.49 -1.21 -7.98 16 3 C -0.04 -1.08 3.44 31.44 0.11 -0.97 16 4 H 0.09 2.22 8.14 -2.39 -0.02 2.21 16 5 C -0.11 -2.68 6.19 31.67 0.20 -2.48 16 6 C -0.11 -3.50 5.32 31.89 0.17 -3.33 16 7 C 0.08 2.78 2.57 45.99 0.12 2.90 16 8 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 9 N -0.52 -20.32 3.87 -890.70 -3.45 -23.76 16 10 C 0.04 1.25 9.11 127.69 1.16 2.41 16 11 C 0.12 5.01 4.93 86.30 0.43 5.43 16 12 C 0.03 1.46 1.01 -52.93 -0.05 1.40 16 13 C -0.45 -24.28 8.17 25.60 0.21 -24.07 16 14 H 0.04 2.35 7.82 -2.91 -0.02 2.32 16 15 C 0.03 1.70 5.43 84.65 0.46 2.16 16 16 N -0.91 -51.78 12.62 21.45 0.27 -51.51 16 17 Si 0.93 44.05 29.54 68.60 2.03 46.08 16 18 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 19 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 20 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 21 C -0.20 -8.32 9.29 30.59 0.28 -8.04 16 22 C -0.16 -7.59 9.14 30.60 0.28 -7.31 16 23 C -0.08 -2.40 5.05 31.44 0.16 -2.25 16 24 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.08 1.21 8.12 -2.39 -0.02 1.19 16 27 H 0.08 1.97 7.81 -2.39 -0.02 1.95 16 28 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.06 1.98 7.58 -2.39 -0.02 1.96 16 31 H 0.07 2.14 7.04 -2.38 -0.02 2.13 16 32 H 0.06 2.20 6.81 -2.39 -0.02 2.19 16 33 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.05 2.40 6.40 -2.39 -0.02 2.38 16 35 H 0.01 0.37 7.86 -2.39 -0.02 0.35 16 36 H 0.25 13.95 8.32 -92.71 -0.77 13.18 16 37 H 0.08 3.14 8.08 -2.39 -0.02 3.12 16 38 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 39 H 0.06 3.03 8.14 -2.39 -0.02 3.01 16 40 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 41 H 0.08 2.39 7.63 -2.39 -0.02 2.37 16 42 H 0.07 1.98 7.61 -2.39 -0.02 1.96 16 Total: -1.00 -57.98 341.45 3.32 -54.66 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.95 Total: 17.21 kcal Atomic # 6 Polarization: -39.41 SS G_CDS: 4.72 Total: -34.69 kcal Atomic # 7 Polarization: -72.10 SS G_CDS: -3.18 Total: -75.28 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: -6.77 SS G_CDS: -1.21 Total: -7.98 kcal Total: -57.98 3.32 -54.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687957521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.161 kcal (2) G-P(sol) polarization free energy of solvation -57.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds