Wall clock time and date at job start Mon Mar 30 2020 01:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81408 * 102.99820 * 2 1 4 4 C 1.52995 * 109.46908 * 180.02562 * 3 2 1 5 5 C 1.53118 * 109.52427 * 294.67756 * 4 3 2 6 6 C 1.53036 * 109.27947 * 182.44403 * 5 4 3 7 7 N 1.46843 * 109.52329 * 59.18066 * 6 5 4 8 8 C 1.46903 * 111.00107 * 174.16164 * 7 6 5 9 9 C 1.53003 * 109.46640 * 306.58824 * 8 7 6 10 10 C 1.50699 * 115.55344 * 305.97741 * 9 8 7 11 11 H 1.08003 * 120.00265 * 144.28125 * 10 9 8 12 12 C 1.37880 * 119.99716 * 324.28619 * 10 9 8 13 13 N 1.31514 * 120.00288 * 351.50809 * 12 10 9 14 14 Si 1.86807 * 119.99842 * 171.50533 * 12 10 9 15 15 H 1.48500 * 109.47021 * 65.00090 * 14 12 10 16 16 H 1.48498 * 109.47022 * 185.00025 * 14 12 10 17 17 H 1.48504 * 109.47160 * 305.00192 * 14 12 10 18 18 C 1.53003 * 117.49741 * 160.31223 * 9 8 7 19 19 C 1.52993 * 117.49948 * 91.65320 * 9 8 7 20 20 C 1.46841 * 111.20110 * 298.25835 * 7 6 5 21 21 C 1.53038 * 109.52360 * 61.74142 * 20 7 6 22 22 H 1.09007 * 109.47144 * 299.99813 * 1 2 3 23 23 H 1.08991 * 109.47417 * 60.00177 * 1 2 3 24 24 H 1.09006 * 109.46720 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46815 * 59.99468 * 3 2 1 26 26 H 1.09003 * 109.46936 * 300.00358 * 3 2 1 27 27 H 1.08992 * 109.57584 * 54.84362 * 4 3 2 28 28 H 1.08999 * 109.50460 * 302.38607 * 5 4 3 29 29 H 1.09008 * 109.49965 * 62.50320 * 5 4 3 30 30 H 1.09001 * 109.45930 * 299.16345 * 6 5 4 31 31 H 1.09002 * 109.46114 * 179.19996 * 6 5 4 32 32 H 1.08993 * 109.46863 * 66.58639 * 8 7 6 33 33 H 1.09001 * 109.47050 * 186.59226 * 8 7 6 34 34 H 0.97005 * 119.99762 * 185.01061 * 13 12 10 35 35 H 1.09010 * 117.49516 * 359.97438 * 18 9 8 36 36 H 1.08996 * 117.50055 * 145.01462 * 18 9 8 37 37 H 1.09004 * 117.50112 * 214.97348 * 19 9 8 38 38 H 1.09000 * 117.50471 * 359.97210 * 19 9 8 39 39 H 1.08999 * 109.46226 * 301.72963 * 20 7 6 40 40 H 1.09003 * 109.46616 * 181.75448 * 20 7 6 41 41 H 1.08996 * 109.50647 * 180.88364 * 21 20 7 42 42 H 1.09003 * 109.50718 * 60.76254 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7422 1.9400 -0.0006 5 6 4.3192 1.3989 1.3104 6 6 5.8320 1.6294 1.3299 7 7 6.1111 3.0658 1.2075 8 6 7.5465 3.3381 1.3613 9 6 8.0459 2.7186 2.6682 10 6 7.2882 3.1181 3.9081 11 1 7.1352 2.4017 4.7018 12 6 6.7901 4.3980 4.0292 13 7 7.1154 5.3166 3.1460 14 14 5.6531 4.8275 5.4479 15 1 6.3941 4.7092 6.7293 16 1 5.1637 6.2201 5.2859 17 1 4.4978 3.8945 5.4562 18 6 9.5506 2.4786 2.8065 19 6 8.6013 1.2944 2.6079 20 6 5.6080 3.5980 -0.0652 21 6 4.0885 3.4263 -0.1264 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8030 2.2372 0.8900 26 1 1.8030 2.2372 -0.8900 27 1 4.1714 1.3937 -0.8405 28 1 3.8610 1.9188 2.1517 29 1 4.1127 0.3312 1.3855 30 1 6.2911 1.0978 0.4964 31 1 6.2438 1.2579 2.2683 32 1 8.0905 2.9043 0.5224 33 1 7.7116 4.4154 1.3835 34 1 6.8247 6.2337 3.2706 35 1 10.1847 2.7617 1.9662 36 1 9.9924 2.6093 3.7943 37 1 8.4190 0.6463 3.4652 38 1 8.6106 0.7984 1.6373 39 1 6.0682 3.0572 -0.8922 40 1 5.8572 4.6565 -0.1402 41 1 3.7173 3.8071 -1.0778 42 1 3.6266 3.9781 0.6923 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719291720.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:30 Heat of formation + Delta-G solvation = 19.389020 kcal Electronic energy + Delta-G solvation = -19621.175129 eV Core-core repulsion = 16920.753613 eV Total energy + Delta-G solvation = -2700.421516 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.67280 -36.43485 -33.37473 -31.94881 -30.18900 -29.19306 -28.09694 -25.47683 -24.29365 -22.60287 -21.30167 -20.97968 -19.16087 -18.78252 -16.21275 -16.06809 -15.08741 -14.61099 -14.49198 -14.11408 -14.08793 -13.81034 -13.57857 -13.48757 -13.05111 -12.90261 -12.42139 -12.12572 -11.82494 -11.52321 -11.25619 -11.07526 -10.84316 -10.64731 -10.55575 -10.39536 -10.35926 -10.16289 -9.92915 -9.80653 -9.61671 -9.17923 -8.89084 -8.50981 -7.92278 -7.66257 -7.05181 -5.82639 -3.86797 1.66916 2.60009 3.39098 3.43448 3.48160 4.51788 4.80181 4.93463 4.95178 4.99347 5.02059 5.21819 5.28770 5.53843 5.58950 5.63425 5.69823 5.79292 5.89159 5.98066 6.14261 6.18102 6.25846 6.33123 6.43182 6.44399 6.53608 6.62801 6.67117 6.75245 6.81605 6.90654 6.98695 7.01928 7.29449 7.41005 7.70667 8.11533 8.30042 8.35726 8.62821 9.06555 9.73373 11.18405 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019224 B = 0.005804 C = 0.005264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.196284 B = 4823.213657 C = 5318.369366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.265 6.265 3 C -0.074 4.074 4 C -0.070 4.070 5 C -0.108 4.108 6 C 0.060 3.940 7 N -0.496 5.496 8 C 0.105 3.895 9 C 0.066 3.934 10 C -0.479 4.479 11 H 0.053 0.947 12 C 0.092 3.908 13 N -0.872 5.872 14 Si 0.888 3.112 15 H -0.283 1.283 16 H -0.290 1.290 17 H -0.276 1.276 18 C -0.207 4.207 19 C -0.220 4.220 20 C 0.061 3.939 21 C -0.103 4.103 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.097 0.903 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.007 0.993 31 H 0.094 0.906 32 H -0.019 1.019 33 H 0.116 0.884 34 H 0.257 0.743 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.013 0.987 40 H 0.071 0.929 41 H 0.055 0.945 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.619 -5.288 -7.799 13.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S -0.039 6.039 3 C -0.222 4.222 4 C -0.090 4.090 5 C -0.146 4.146 6 C -0.069 4.069 7 N -0.220 5.220 8 C -0.022 4.022 9 C 0.066 3.934 10 C -0.516 4.516 11 H 0.071 0.929 12 C -0.111 4.111 13 N -0.508 5.508 14 Si 0.717 3.283 15 H -0.209 1.209 16 H -0.215 1.215 17 H -0.202 1.202 18 C -0.246 4.246 19 C -0.257 4.257 20 C -0.068 4.068 21 C -0.142 4.142 22 H 0.093 0.907 23 H 0.091 0.909 24 H 0.116 0.884 25 H 0.100 0.900 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.025 0.975 31 H 0.112 0.888 32 H -0.001 1.001 33 H 0.134 0.866 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.031 0.969 40 H 0.090 0.910 41 H 0.074 0.926 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.318 -5.732 -7.505 13.267 hybrid contribution -0.997 0.780 0.058 1.267 sum -10.315 -4.952 -7.447 13.652 Atomic orbital electron populations 1.23362 0.95282 1.06115 1.04601 1.86962 1.06160 1.12766 1.97991 1.23556 1.01001 0.93118 1.04504 1.21014 0.90771 0.97473 0.99759 1.21683 0.96617 1.00086 0.96255 1.22099 0.94131 0.89479 1.01145 1.61677 1.17450 1.12912 1.29940 1.21767 0.84193 1.03828 0.92426 1.18959 0.89770 0.89693 0.95027 1.20222 1.33831 0.96878 1.00672 0.92920 1.24708 0.94898 0.96297 0.95227 1.69760 1.45301 1.01373 1.34413 0.86741 0.81834 0.77226 0.82511 1.20922 1.21545 1.20167 1.22991 0.96971 1.04649 0.99977 1.22982 1.09902 0.93273 0.99534 1.21943 0.93774 1.00119 0.90936 1.21595 0.96953 0.94533 1.01128 0.90658 0.90892 0.88422 0.90016 0.90576 0.91186 0.91090 0.91785 0.97504 0.88751 1.00101 0.86587 0.93290 0.92078 0.90510 0.90858 0.91945 0.96865 0.91048 0.92584 0.90978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 10.76 101.05 1.09 -0.05 16 2 S -0.26 -3.36 21.26 -107.50 -2.29 -5.65 16 3 C -0.07 -0.93 5.39 37.16 0.20 -0.73 16 4 C -0.07 -1.04 2.25 -90.50 -0.20 -1.24 16 5 C -0.11 -1.86 5.16 -26.65 -0.14 -2.00 16 6 C 0.06 1.18 4.80 -3.84 -0.02 1.16 16 7 N -0.50 -10.61 4.34 -234.67 -1.02 -11.63 16 8 C 0.10 2.45 4.17 -3.82 -0.02 2.43 16 9 C 0.07 1.61 1.08 -155.66 -0.17 1.45 16 10 C -0.48 -12.80 8.31 -34.44 -0.29 -13.09 16 11 H 0.05 1.43 7.83 -52.48 -0.41 1.02 16 12 C 0.09 2.46 5.19 -17.82 -0.09 2.37 16 13 N -0.87 -23.57 10.69 55.43 0.59 -22.98 16 14 Si 0.89 21.19 29.55 -169.99 -5.02 16.17 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 C -0.21 -4.76 9.96 -26.69 -0.27 -5.02 16 19 C -0.22 -4.81 8.16 -26.70 -0.22 -5.03 16 20 C 0.06 1.11 5.46 -3.84 -0.02 1.09 16 21 C -0.10 -1.57 5.38 -26.65 -0.14 -1.71 16 22 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 25 H 0.08 1.03 8.14 -51.92 -0.42 0.61 16 26 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 29 H 0.06 1.05 7.25 -51.92 -0.38 0.68 16 30 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.09 2.07 5.36 -51.93 -0.28 1.80 16 32 H -0.02 -0.43 8.09 -51.93 -0.42 -0.85 16 33 H 0.12 3.00 5.99 -51.93 -0.31 2.69 16 34 H 0.26 6.76 8.32 -40.82 -0.34 6.42 16 35 H 0.06 1.32 8.14 -51.92 -0.42 0.90 16 36 H 0.08 1.78 8.14 -51.93 -0.42 1.35 16 37 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.07 1.34 8.12 -51.93 -0.42 0.91 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 336.31 15.07 5.07 5.07 Total: -1.00 -26.94 336.31 -10.64 -37.59 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -7.69 Total: 1.80 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: -0.28 Total: -20.36 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: -0.43 Total: -34.61 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -3.36 SS G_CDS: -2.29 Total: -5.65 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -26.94 -10.64 -37.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719291720.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.975 kcal (2) G-P(sol) polarization free energy of solvation -26.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds