Wall clock time and date at job start Mon Mar 30 2020 01:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81408 * 102.99820 * 2 1 4 4 C 1.52995 * 109.46908 * 180.02562 * 3 2 1 5 5 C 1.53118 * 109.52427 * 294.67756 * 4 3 2 6 6 C 1.53036 * 109.27947 * 182.44403 * 5 4 3 7 7 N 1.46843 * 109.52329 * 59.18066 * 6 5 4 8 8 C 1.46903 * 111.00107 * 174.16164 * 7 6 5 9 9 C 1.53003 * 109.46640 * 306.58824 * 8 7 6 10 10 C 1.50699 * 115.55344 * 305.97741 * 9 8 7 11 11 H 1.08003 * 120.00265 * 144.28125 * 10 9 8 12 12 C 1.37880 * 119.99716 * 324.28619 * 10 9 8 13 13 N 1.31514 * 120.00288 * 351.50809 * 12 10 9 14 14 Si 1.86807 * 119.99842 * 171.50533 * 12 10 9 15 15 H 1.48500 * 109.47021 * 65.00090 * 14 12 10 16 16 H 1.48498 * 109.47022 * 185.00025 * 14 12 10 17 17 H 1.48504 * 109.47160 * 305.00192 * 14 12 10 18 18 C 1.53003 * 117.49741 * 160.31223 * 9 8 7 19 19 C 1.52993 * 117.49948 * 91.65320 * 9 8 7 20 20 C 1.46841 * 111.20110 * 298.25835 * 7 6 5 21 21 C 1.53038 * 109.52360 * 61.74142 * 20 7 6 22 22 H 1.09007 * 109.47144 * 299.99813 * 1 2 3 23 23 H 1.08991 * 109.47417 * 60.00177 * 1 2 3 24 24 H 1.09006 * 109.46720 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46815 * 59.99468 * 3 2 1 26 26 H 1.09003 * 109.46936 * 300.00358 * 3 2 1 27 27 H 1.08992 * 109.57584 * 54.84362 * 4 3 2 28 28 H 1.08999 * 109.50460 * 302.38607 * 5 4 3 29 29 H 1.09008 * 109.49965 * 62.50320 * 5 4 3 30 30 H 1.09001 * 109.45930 * 299.16345 * 6 5 4 31 31 H 1.09002 * 109.46114 * 179.19996 * 6 5 4 32 32 H 1.08993 * 109.46863 * 66.58639 * 8 7 6 33 33 H 1.09001 * 109.47050 * 186.59226 * 8 7 6 34 34 H 0.97005 * 119.99762 * 185.01061 * 13 12 10 35 35 H 1.09010 * 117.49516 * 359.97438 * 18 9 8 36 36 H 1.08996 * 117.50055 * 145.01462 * 18 9 8 37 37 H 1.09004 * 117.50112 * 214.97348 * 19 9 8 38 38 H 1.09000 * 117.50471 * 359.97210 * 19 9 8 39 39 H 1.08999 * 109.46226 * 301.72963 * 20 7 6 40 40 H 1.09003 * 109.46616 * 181.75448 * 20 7 6 41 41 H 1.08996 * 109.50647 * 180.88364 * 21 20 7 42 42 H 1.09003 * 109.50718 * 60.76254 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7422 1.9400 -0.0006 5 6 4.3192 1.3989 1.3104 6 6 5.8320 1.6294 1.3299 7 7 6.1111 3.0658 1.2075 8 6 7.5465 3.3381 1.3613 9 6 8.0459 2.7186 2.6682 10 6 7.2882 3.1181 3.9081 11 1 7.1352 2.4017 4.7018 12 6 6.7901 4.3980 4.0292 13 7 7.1154 5.3166 3.1460 14 14 5.6531 4.8275 5.4479 15 1 6.3941 4.7092 6.7293 16 1 5.1637 6.2201 5.2859 17 1 4.4978 3.8945 5.4562 18 6 9.5506 2.4786 2.8065 19 6 8.6013 1.2944 2.6079 20 6 5.6080 3.5980 -0.0652 21 6 4.0885 3.4263 -0.1264 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8030 2.2372 0.8900 26 1 1.8030 2.2372 -0.8900 27 1 4.1714 1.3937 -0.8405 28 1 3.8610 1.9188 2.1517 29 1 4.1127 0.3312 1.3855 30 1 6.2911 1.0978 0.4964 31 1 6.2438 1.2579 2.2683 32 1 8.0905 2.9043 0.5224 33 1 7.7116 4.4154 1.3835 34 1 6.8247 6.2337 3.2706 35 1 10.1847 2.7617 1.9662 36 1 9.9924 2.6093 3.7943 37 1 8.4190 0.6463 3.4652 38 1 8.6106 0.7984 1.6373 39 1 6.0682 3.0572 -0.8922 40 1 5.8572 4.6565 -0.1402 41 1 3.7173 3.8071 -1.0778 42 1 3.6266 3.9781 0.6923 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719291720.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:30 Heat of formation + Delta-G solvation = 6.462574 kcal Electronic energy + Delta-G solvation = -19621.735662 eV Core-core repulsion = 16920.753613 eV Total energy + Delta-G solvation = -2700.982049 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.21012 -38.11907 -34.84631 -33.98246 -31.61662 -30.04984 -29.33240 -27.46386 -25.89084 -24.08167 -22.84828 -22.62640 -20.71043 -20.52166 -18.05273 -17.12974 -16.66342 -16.47470 -15.80827 -15.57949 -15.39715 -15.29234 -14.99971 -14.51240 -14.30395 -14.16856 -13.90565 -13.47749 -13.28955 -13.08514 -12.85468 -12.77236 -12.64806 -12.27735 -12.24705 -12.04978 -11.91826 -11.69135 -11.32946 -11.28853 -11.00082 -10.86705 -10.74402 -10.36432 -9.86785 -8.70027 -8.62354 -7.84997 -5.95026 0.78310 1.46467 1.49457 1.55266 1.73453 2.53336 3.12718 3.41867 3.75571 3.76903 3.82967 3.98713 4.31885 4.35103 4.36617 4.41787 4.42930 4.49998 4.54179 4.62038 4.65135 4.74913 4.78386 4.88880 4.89947 4.94526 4.96159 5.05435 5.08105 5.15331 5.18693 5.27743 5.35056 5.51068 5.54037 5.58076 5.72705 6.12040 6.47279 6.70709 6.76909 7.03269 7.66229 9.13107 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019224 B = 0.005804 C = 0.005264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.196284 B = 4823.213657 C = 5318.369366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.314 6.314 3 C -0.062 4.062 4 C -0.062 4.062 5 C -0.099 4.099 6 C 0.065 3.935 7 N -0.514 5.514 8 C 0.116 3.884 9 C 0.041 3.959 10 C -0.493 4.493 11 H 0.038 0.962 12 C 0.058 3.942 13 N -0.886 5.886 14 Si 0.936 3.064 15 H -0.282 1.282 16 H -0.286 1.286 17 H -0.278 1.278 18 C -0.209 4.209 19 C -0.196 4.196 20 C 0.059 3.941 21 C -0.094 4.094 22 H 0.080 0.920 23 H 0.087 0.913 24 H 0.110 0.890 25 H 0.079 0.921 26 H 0.097 0.903 27 H 0.072 0.928 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.010 0.990 31 H 0.068 0.932 32 H -0.016 1.016 33 H 0.090 0.910 34 H 0.255 0.745 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.022 0.978 40 H 0.060 0.940 41 H 0.087 0.913 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.279 -5.790 -8.836 15.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.088 6.088 3 C -0.210 4.210 4 C -0.082 4.082 5 C -0.137 4.137 6 C -0.063 4.063 7 N -0.238 5.238 8 C -0.011 4.011 9 C 0.040 3.960 10 C -0.530 4.530 11 H 0.057 0.943 12 C -0.144 4.144 13 N -0.524 5.524 14 Si 0.764 3.236 15 H -0.208 1.208 16 H -0.212 1.212 17 H -0.204 1.204 18 C -0.247 4.247 19 C -0.234 4.234 20 C -0.069 4.069 21 C -0.134 4.134 22 H 0.099 0.901 23 H 0.106 0.894 24 H 0.128 0.872 25 H 0.098 0.902 26 H 0.116 0.884 27 H 0.091 0.909 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.028 0.972 31 H 0.087 0.913 32 H 0.002 0.998 33 H 0.107 0.893 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.040 0.960 40 H 0.079 0.921 41 H 0.106 0.894 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.978 -6.238 -8.542 15.244 hybrid contribution -0.473 0.892 0.384 1.080 sum -11.451 -5.346 -8.158 15.042 Atomic orbital electron populations 1.23413 0.91569 1.07314 1.05654 1.87120 1.10317 1.13267 1.98128 1.23401 0.99106 0.93004 1.05457 1.20885 0.92461 0.96725 0.98102 1.21563 0.94608 1.00401 0.97138 1.21999 0.95908 0.88587 0.99826 1.61611 1.16195 1.13919 1.32079 1.21484 0.85738 1.01943 0.91983 1.19041 0.90388 0.91756 0.94821 1.20358 1.34558 0.96826 1.01295 0.94330 1.25203 0.95857 0.96277 0.97064 1.69886 1.45867 1.01323 1.35298 0.85982 0.80264 0.76913 0.80437 1.20766 1.21175 1.20351 1.22996 0.96427 1.05198 1.00102 1.22909 1.07889 0.92297 1.00282 1.22013 0.95833 0.99349 0.89747 1.21537 0.94570 0.94986 1.02296 0.90058 0.89365 0.87166 0.90207 0.88421 0.90940 0.93026 0.91158 0.97158 0.91335 0.99830 0.89262 0.93495 0.90884 0.91222 0.90813 0.90424 0.96032 0.92115 0.89416 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.69 10.76 113.37 1.22 -0.47 16 2 S -0.31 -7.33 21.26 -56.49 -1.20 -8.53 16 3 C -0.06 -1.40 5.39 71.98 0.39 -1.01 16 4 C -0.06 -1.71 2.25 -10.71 -0.02 -1.74 16 5 C -0.10 -3.33 5.16 30.65 0.16 -3.17 16 6 C 0.06 2.56 4.80 86.33 0.41 2.97 16 7 N -0.51 -22.00 4.34 -896.37 -3.89 -25.89 16 8 C 0.12 5.48 4.17 86.30 0.36 5.84 16 9 C 0.04 1.99 1.08 -52.93 -0.06 1.94 16 10 C -0.49 -26.74 8.31 25.60 0.21 -26.53 16 11 H 0.04 2.14 7.83 -2.91 -0.02 2.12 16 12 C 0.06 3.11 5.19 84.66 0.44 3.55 16 13 N -0.89 -48.53 10.69 21.45 0.23 -48.30 16 14 Si 0.94 43.74 29.55 68.60 2.03 45.77 16 15 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 16 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 17 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 18 C -0.21 -9.53 9.96 30.62 0.30 -9.23 16 19 C -0.20 -8.51 8.16 30.62 0.25 -8.26 16 20 C 0.06 2.10 5.46 86.33 0.47 2.57 16 21 C -0.09 -2.72 5.38 30.65 0.16 -2.55 16 22 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.08 1.84 8.14 -2.39 -0.02 1.83 16 26 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.07 2.26 7.25 -2.38 -0.02 2.25 16 30 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.07 3.04 5.36 -2.39 -0.01 3.03 16 32 H -0.02 -0.73 8.09 -2.39 -0.02 -0.75 16 33 H 0.09 4.71 5.99 -2.39 -0.01 4.69 16 34 H 0.26 13.56 8.32 -92.70 -0.77 12.79 16 35 H 0.07 3.12 8.14 -2.38 -0.02 3.10 16 36 H 0.07 3.24 8.14 -2.39 -0.02 3.22 16 37 H 0.07 3.16 8.14 -2.38 -0.02 3.14 16 38 H 0.08 3.10 8.14 -2.39 -0.02 3.09 16 39 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.06 2.26 8.12 -2.39 -0.02 2.24 16 41 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -57.49 336.31 2.42 -55.07 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.95 Total: 17.96 kcal Atomic # 6 Polarization: -40.39 SS G_CDS: 4.30 Total: -36.09 kcal Atomic # 7 Polarization: -70.53 SS G_CDS: -3.66 Total: -74.19 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: -7.33 SS G_CDS: -1.20 Total: -8.53 kcal Total: -57.49 2.42 -55.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719291720.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.535 kcal (2) G-P(sol) polarization free energy of solvation -57.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds