Wall clock time and date at job start Mon Mar 30 2020 01:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46492 * 2 1 4 4 C 1.50703 * 109.47104 * 119.99676 * 2 1 3 5 5 H 1.07996 * 120.00014 * 119.99805 * 4 2 1 6 6 C 1.37885 * 120.00027 * 300.00362 * 4 2 1 7 7 N 1.31508 * 119.99928 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99638 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47186 * 90.00073 * 8 6 4 10 10 H 1.48501 * 109.46524 * 209.99557 * 8 6 4 11 11 H 1.48499 * 109.47351 * 329.99500 * 8 6 4 12 12 N 1.46495 * 109.46896 * 239.99853 * 2 1 3 13 13 C 1.34774 * 120.00264 * 85.00055 * 12 2 1 14 14 O 1.21606 * 119.99841 * 0.02562 * 13 12 2 15 15 C 1.47297 * 120.00430 * 179.97438 * 13 12 2 16 16 F 1.35103 * 120.00075 * 93.00304 * 15 13 12 17 17 C 1.33114 * 120.00135 * 273.00904 * 15 13 12 18 18 C 1.50703 * 120.00008 * 5.33692 * 17 15 13 19 19 C 1.53005 * 109.46916 * 245.27481 * 18 17 15 20 20 C 1.52999 * 109.47095 * 179.97438 * 19 18 17 21 21 C 1.52996 * 109.46968 * 60.00042 * 20 19 18 22 22 C 1.52996 * 109.47330 * 299.99994 * 21 20 19 23 23 C 1.52997 * 109.47267 * 125.27895 * 18 17 15 24 24 H 1.09001 * 109.47137 * 300.00449 * 1 2 3 25 25 H 1.09001 * 109.47193 * 60.00038 * 1 2 3 26 26 H 1.08998 * 109.47058 * 180.02562 * 1 2 3 27 27 H 0.96998 * 119.99967 * 180.02562 * 7 6 4 28 28 H 0.97003 * 119.99522 * 264.99569 * 12 2 1 29 29 H 1.08000 * 120.00027 * 185.33791 * 17 15 13 30 30 H 1.08996 * 109.47394 * 5.27386 * 18 17 15 31 31 H 1.08996 * 109.47011 * 300.00139 * 19 18 17 32 32 H 1.09009 * 109.46946 * 60.00074 * 19 18 17 33 33 H 1.09002 * 109.47108 * 300.00294 * 20 19 18 34 34 H 1.08997 * 109.47273 * 180.02562 * 20 19 18 35 35 H 1.09009 * 109.47028 * 180.02562 * 21 20 19 36 36 H 1.09000 * 109.47457 * 60.00418 * 21 20 19 37 37 H 1.09002 * 109.47236 * 300.00048 * 22 21 20 38 38 H 1.09003 * 109.46983 * 180.02562 * 22 21 20 39 39 H 1.09006 * 109.46740 * 299.99829 * 23 18 17 40 40 H 1.08996 * 109.47330 * 59.99451 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.6297 -0.5457 4.4125 10 1 1.3430 -0.9490 5.1120 11 1 2.4858 -2.5661 3.7121 12 7 2.0183 -0.6906 -1.1961 13 6 2.1470 -0.0184 -2.3571 14 8 1.8583 1.1617 -2.4117 15 6 2.6385 -0.7126 -3.5597 16 9 1.7616 -1.2616 -4.4285 17 6 3.9466 -0.7992 -3.7903 18 6 4.9278 -0.2942 -2.7640 19 6 5.6969 0.8980 -3.3370 20 6 6.6925 1.4111 -2.2948 21 6 7.6755 0.2951 -1.9357 22 6 6.9065 -0.8971 -1.3628 23 6 5.9108 -1.4104 -2.4055 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7094 1.1619 3.4844 28 1 2.2490 -1.6318 -1.1525 29 1 4.3048 -1.2314 -4.7130 30 1 4.3894 0.0171 -1.8689 31 1 6.2353 0.5867 -4.2321 32 1 4.9965 1.6933 -3.5924 33 1 6.1537 1.7225 -1.3999 34 1 7.2401 2.2607 -2.7028 35 1 8.3846 0.6605 -1.1929 36 1 8.2144 -0.0164 -2.8306 37 1 6.3676 -0.5857 -0.4679 38 1 7.6069 -1.6920 -1.1065 39 1 5.3628 -2.2598 -1.9973 40 1 6.4492 -1.7218 -3.3006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773952008.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:17 Heat of formation + Delta-G solvation = -100.918550 kcal Electronic energy + Delta-G solvation = -21363.325203 eV Core-core repulsion = 18091.473583 eV Total energy + Delta-G solvation = -3271.851620 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.67864 -39.36298 -38.24237 -34.91696 -33.69323 -32.37714 -30.67121 -29.65337 -28.49684 -25.31728 -23.81540 -22.49420 -22.10853 -20.36424 -19.80987 -19.15402 -17.62950 -16.22027 -16.06878 -15.75465 -15.26448 -14.94719 -14.53508 -14.10416 -14.08588 -13.72141 -13.56729 -13.37250 -12.58268 -12.55071 -12.36638 -12.12163 -12.07838 -11.76370 -11.16137 -11.06244 -11.02640 -10.98539 -10.82999 -10.41611 -10.38020 -10.28491 -10.19516 -10.13499 -9.30539 -9.12505 -8.84410 -8.61243 -8.07040 -6.17238 -4.26959 1.73133 3.00073 3.21595 3.28547 3.30199 3.72905 4.30473 4.45733 4.77338 4.84026 5.00252 5.11937 5.15995 5.30817 5.34469 5.41630 5.56148 5.57378 5.58888 5.71545 5.84271 6.01969 6.06864 6.13427 6.23818 6.24866 6.33400 6.39104 6.51364 6.64503 6.77046 6.89596 7.07357 7.29315 7.44707 7.62059 7.82603 8.07364 8.47595 8.66071 8.90511 9.40180 10.88819 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.014556 B = 0.006748 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.198510 B = 4148.408950 C = 5364.292232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.263 3.737 3 H 0.052 0.948 4 C -0.534 4.534 5 H 0.063 0.937 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.901 3.099 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.690 5.690 13 C 0.534 3.466 14 O -0.531 6.531 15 C 0.022 3.978 16 F -0.134 7.134 17 C -0.153 4.153 18 C -0.060 4.060 19 C -0.107 4.107 20 C -0.121 4.121 21 C -0.118 4.118 22 C -0.122 4.122 23 C -0.105 4.105 24 H 0.092 0.908 25 H 0.015 0.985 26 H 0.028 0.972 27 H 0.265 0.735 28 H 0.393 0.607 29 H 0.131 0.869 30 H 0.089 0.911 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.626 -4.277 -9.517 14.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.162 3.838 3 H 0.069 0.931 4 C -0.573 4.573 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.338 5.338 13 C 0.316 3.684 14 O -0.409 6.409 15 C 0.000 4.000 16 F -0.113 7.113 17 C -0.173 4.173 18 C -0.078 4.078 19 C -0.145 4.145 20 C -0.159 4.159 21 C -0.155 4.155 22 C -0.160 4.160 23 C -0.142 4.142 24 H 0.111 0.889 25 H 0.034 0.966 26 H 0.047 0.953 27 H 0.075 0.925 28 H 0.226 0.774 29 H 0.149 0.851 30 H 0.108 0.892 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.265 -3.314 -9.384 14.297 hybrid contribution 0.140 -1.038 0.560 1.187 sum 10.406 -4.352 -8.824 14.321 Atomic orbital electron populations 1.22095 0.98183 0.99383 1.01086 1.18863 0.91248 0.94075 0.79635 0.93064 1.21174 1.32665 1.13332 0.90105 0.91919 1.24876 0.94721 0.94933 0.99048 1.69894 1.35671 1.22396 1.24000 0.86446 0.78632 0.79883 0.82156 1.20503 1.21037 1.19788 1.46669 1.63317 1.13624 1.10188 1.18258 0.79366 0.87253 0.83538 1.90818 1.50006 1.15200 1.84908 1.20017 0.87976 1.00769 0.91268 1.91497 1.69336 1.82670 1.67785 1.23522 0.91953 1.00816 1.01045 1.20265 0.94823 0.95742 0.96992 1.21500 0.97759 0.97087 0.98126 1.21542 0.97135 0.97626 0.99572 1.21528 0.97697 0.95852 1.00435 1.21558 0.97947 0.97579 0.98886 1.21492 0.96499 0.97269 0.98971 0.88901 0.96569 0.95251 0.92484 0.77422 0.85146 0.89236 0.92029 0.91559 0.91422 0.92093 0.92223 0.92337 0.91176 0.92047 0.91595 0.92017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.26 37.16 0.34 -3.35 16 2 C 0.26 6.56 2.56 -69.08 -0.18 6.38 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 4 C -0.53 -13.75 8.73 -34.44 -0.30 -14.05 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.39 11.32 55.43 0.63 -23.76 16 8 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 12 N -0.69 -14.35 4.88 -56.05 -0.27 -14.63 16 13 C 0.53 11.02 5.56 -12.58 -0.07 10.95 16 14 O -0.53 -13.00 16.77 5.27 0.09 -12.92 16 15 C 0.02 0.37 7.19 -37.68 -0.27 0.10 16 16 F -0.13 -2.26 17.27 2.25 0.04 -2.22 16 17 C -0.15 -2.11 8.81 -36.09 -0.32 -2.42 16 18 C -0.06 -0.81 2.28 -91.77 -0.21 -1.02 16 19 C -0.11 -1.34 5.19 -26.73 -0.14 -1.48 16 20 C -0.12 -1.44 5.92 -26.73 -0.16 -1.60 16 21 C -0.12 -1.24 5.92 -26.74 -0.16 -1.40 16 22 C -0.12 -1.40 5.92 -26.71 -0.16 -1.55 16 23 C -0.10 -1.21 5.19 -26.71 -0.14 -1.35 16 24 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.39 7.17 8.52 -40.82 -0.35 6.82 16 29 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 30 H 0.09 1.52 6.21 -51.93 -0.32 1.19 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 329.13 15.07 4.96 4.96 Total: -1.00 -28.80 329.13 -7.84 -36.65 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.42 Total: 5.83 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -1.85 Total: -9.11 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 0.35 Total: -38.39 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.09 Total: -12.92 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.80 -7.84 -36.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773952008.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.273 kcal (2) G-P(sol) polarization free energy of solvation -28.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds