Wall clock time and date at job start Mon Mar 30 2020 01:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46492 * 2 1 4 4 C 1.50703 * 109.47104 * 119.99676 * 2 1 3 5 5 H 1.07996 * 120.00014 * 119.99805 * 4 2 1 6 6 C 1.37885 * 120.00027 * 300.00362 * 4 2 1 7 7 N 1.31508 * 119.99928 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99638 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47186 * 90.00073 * 8 6 4 10 10 H 1.48501 * 109.46524 * 209.99557 * 8 6 4 11 11 H 1.48499 * 109.47351 * 329.99500 * 8 6 4 12 12 N 1.46495 * 109.46896 * 239.99853 * 2 1 3 13 13 C 1.34774 * 120.00264 * 85.00055 * 12 2 1 14 14 O 1.21606 * 119.99841 * 0.02562 * 13 12 2 15 15 C 1.47297 * 120.00430 * 179.97438 * 13 12 2 16 16 F 1.35103 * 120.00075 * 93.00304 * 15 13 12 17 17 C 1.33114 * 120.00135 * 273.00904 * 15 13 12 18 18 C 1.50703 * 120.00008 * 5.33692 * 17 15 13 19 19 C 1.53005 * 109.46916 * 245.27481 * 18 17 15 20 20 C 1.52999 * 109.47095 * 179.97438 * 19 18 17 21 21 C 1.52996 * 109.46968 * 60.00042 * 20 19 18 22 22 C 1.52996 * 109.47330 * 299.99994 * 21 20 19 23 23 C 1.52997 * 109.47267 * 125.27895 * 18 17 15 24 24 H 1.09001 * 109.47137 * 300.00449 * 1 2 3 25 25 H 1.09001 * 109.47193 * 60.00038 * 1 2 3 26 26 H 1.08998 * 109.47058 * 180.02562 * 1 2 3 27 27 H 0.96998 * 119.99967 * 180.02562 * 7 6 4 28 28 H 0.97003 * 119.99522 * 264.99569 * 12 2 1 29 29 H 1.08000 * 120.00027 * 185.33791 * 17 15 13 30 30 H 1.08996 * 109.47394 * 5.27386 * 18 17 15 31 31 H 1.08996 * 109.47011 * 300.00139 * 19 18 17 32 32 H 1.09009 * 109.46946 * 60.00074 * 19 18 17 33 33 H 1.09002 * 109.47108 * 300.00294 * 20 19 18 34 34 H 1.08997 * 109.47273 * 180.02562 * 20 19 18 35 35 H 1.09009 * 109.47028 * 180.02562 * 21 20 19 36 36 H 1.09000 * 109.47457 * 60.00418 * 21 20 19 37 37 H 1.09002 * 109.47236 * 300.00048 * 22 21 20 38 38 H 1.09003 * 109.46983 * 180.02562 * 22 21 20 39 39 H 1.09006 * 109.46740 * 299.99829 * 23 18 17 40 40 H 1.08996 * 109.47330 * 59.99451 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.6297 -0.5457 4.4125 10 1 1.3430 -0.9490 5.1120 11 1 2.4858 -2.5661 3.7121 12 7 2.0183 -0.6906 -1.1961 13 6 2.1470 -0.0184 -2.3571 14 8 1.8583 1.1617 -2.4117 15 6 2.6385 -0.7126 -3.5597 16 9 1.7616 -1.2616 -4.4285 17 6 3.9466 -0.7992 -3.7903 18 6 4.9278 -0.2942 -2.7640 19 6 5.6969 0.8980 -3.3370 20 6 6.6925 1.4111 -2.2948 21 6 7.6755 0.2951 -1.9357 22 6 6.9065 -0.8971 -1.3628 23 6 5.9108 -1.4104 -2.4055 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7094 1.1619 3.4844 28 1 2.2490 -1.6318 -1.1525 29 1 4.3048 -1.2314 -4.7130 30 1 4.3894 0.0171 -1.8689 31 1 6.2353 0.5867 -4.2321 32 1 4.9965 1.6933 -3.5924 33 1 6.1537 1.7225 -1.3999 34 1 7.2401 2.2607 -2.7028 35 1 8.3846 0.6605 -1.1929 36 1 8.2144 -0.0164 -2.8306 37 1 6.3676 -0.5857 -0.4679 38 1 7.6069 -1.6920 -1.1065 39 1 5.3628 -2.2598 -1.9973 40 1 6.4492 -1.7218 -3.3006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773952008.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:17 Heat of formation + Delta-G solvation = -117.418994 kcal Electronic energy + Delta-G solvation = -21364.040716 eV Core-core repulsion = 18091.473583 eV Total energy + Delta-G solvation = -3272.567133 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.95915 -40.92238 -39.42433 -36.84640 -34.96102 -34.24086 -31.61435 -31.25559 -29.95620 -27.38665 -25.25779 -23.45225 -23.38161 -22.14520 -20.89054 -20.67797 -19.12377 -17.93532 -17.61518 -17.30997 -16.70519 -16.25530 -16.08585 -15.48804 -15.28535 -15.05265 -14.94933 -14.53099 -14.47054 -13.88443 -13.70763 -13.55553 -13.10495 -13.07033 -13.04700 -12.93734 -12.81119 -12.31300 -12.16707 -12.01350 -12.00324 -11.36571 -11.19465 -11.13917 -11.09662 -11.01325 -10.63095 -10.06965 -9.94560 -8.20036 -6.37689 0.49439 1.34873 1.44474 1.45022 1.55693 2.14336 2.43659 3.10771 3.26473 3.58092 3.78153 3.88805 4.04277 4.26036 4.37689 4.39425 4.58103 4.60972 4.65136 4.67298 4.75138 4.82303 4.85051 4.93335 5.01990 5.14708 5.18487 5.27381 5.28830 5.31646 5.41179 5.43256 5.46172 5.48980 5.59962 5.61925 5.79649 6.02562 6.64763 6.70585 7.16383 7.36291 8.86649 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.014556 B = 0.006748 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.198510 B = 4148.408950 C = 5364.292232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.270 3.730 3 H 0.004 0.996 4 C -0.545 4.545 5 H 0.075 0.925 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.971 3.029 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.259 1.259 12 N -0.683 5.683 13 C 0.536 3.464 14 O -0.579 6.579 15 C -0.010 4.010 16 F -0.134 7.134 17 C -0.104 4.104 18 C -0.067 4.067 19 C -0.105 4.105 20 C -0.123 4.123 21 C -0.113 4.113 22 C -0.124 4.124 23 C -0.100 4.100 24 H 0.071 0.929 25 H 0.010 0.990 26 H 0.042 0.958 27 H 0.266 0.734 28 H 0.407 0.593 29 H 0.175 0.825 30 H 0.047 0.953 31 H 0.094 0.906 32 H 0.042 0.958 33 H 0.034 0.966 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.038 0.962 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.119 -6.601 -10.624 18.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.168 3.832 3 H 0.022 0.978 4 C -0.583 4.583 5 H 0.093 0.907 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.795 3.205 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.183 1.183 12 N -0.332 5.332 13 C 0.320 3.680 14 O -0.460 6.460 15 C -0.032 4.032 16 F -0.113 7.113 17 C -0.124 4.124 18 C -0.086 4.086 19 C -0.142 4.142 20 C -0.160 4.160 21 C -0.150 4.150 22 C -0.162 4.162 23 C -0.137 4.137 24 H 0.090 0.910 25 H 0.029 0.971 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.242 0.758 29 H 0.192 0.808 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.101 0.899 37 H 0.057 0.943 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.769 -5.679 -10.509 17.486 hybrid contribution -0.577 -0.252 0.883 1.084 sum 12.193 -5.931 -9.626 16.628 Atomic orbital electron populations 1.21937 0.98183 0.99698 0.99750 1.18468 0.91188 0.92143 0.81450 0.97826 1.21471 1.32746 1.13643 0.90426 0.90654 1.25778 0.94762 0.95541 1.02262 1.70042 1.36842 1.23895 1.24727 0.85356 0.77838 0.79267 0.77992 1.20216 1.20976 1.18283 1.46404 1.63182 1.14111 1.09455 1.18846 0.77932 0.86760 0.84479 1.90780 1.51889 1.17519 1.85853 1.19451 0.88848 1.04252 0.90696 1.91496 1.69573 1.82893 1.67331 1.23946 0.90348 0.96620 1.01494 1.20361 0.95331 0.97386 0.95518 1.21495 0.97504 0.95811 0.99417 1.21551 0.97309 0.99000 0.98168 1.21515 0.97197 0.94694 1.01590 1.21575 0.98176 0.98619 0.97795 1.21494 0.95982 0.95947 1.00266 0.90997 0.97084 0.93907 0.92451 0.75750 0.80821 0.93412 0.88757 0.93873 0.94699 0.90567 0.91721 0.89857 0.94268 0.90064 0.91712 0.88839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.06 9.26 71.98 0.67 -6.40 16 2 C 0.27 14.09 2.56 44.25 0.11 14.21 16 3 H 0.00 0.23 7.58 -2.39 -0.02 0.22 16 4 C -0.54 -28.49 8.73 25.60 0.22 -28.27 16 5 H 0.08 3.66 7.74 -2.91 -0.02 3.64 16 6 C 0.02 0.90 5.30 84.66 0.45 1.35 16 7 N -0.92 -52.24 11.32 21.45 0.24 -52.00 16 8 Si 0.97 41.43 29.54 68.60 2.03 43.46 16 9 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 10 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 12 N -0.68 -29.28 4.88 -449.51 -2.19 -31.47 16 13 C 0.54 22.86 5.56 86.63 0.48 23.34 16 14 O -0.58 -29.99 16.77 -4.05 -0.07 -30.06 16 15 C -0.01 -0.34 7.19 23.50 0.17 -0.17 16 16 F -0.13 -4.35 17.27 44.97 0.78 -3.57 16 17 C -0.10 -2.59 8.81 24.54 0.22 -2.38 16 18 C -0.07 -1.73 2.28 -11.54 -0.03 -1.76 16 19 C -0.10 -2.44 5.19 30.60 0.16 -2.28 16 20 C -0.12 -2.79 5.92 30.59 0.18 -2.61 16 21 C -0.11 -2.07 5.92 30.59 0.18 -1.89 16 22 C -0.12 -2.57 5.92 30.61 0.18 -2.39 16 23 C -0.10 -1.98 5.19 30.61 0.16 -1.82 16 24 H 0.07 4.02 6.07 -2.39 -0.01 4.00 16 25 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 28 H 0.41 14.92 8.52 -92.71 -0.79 14.13 16 29 H 0.17 2.93 8.06 -2.91 -0.02 2.91 16 30 H 0.05 1.66 6.21 -2.39 -0.01 1.65 16 31 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 37 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -65.72 329.13 4.17 -61.55 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: 0.23 Total: 23.17 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: 3.15 Total: -11.07 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -1.95 Total: -83.47 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -0.07 Total: -30.06 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.78 Total: -3.57 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -65.72 4.17 -61.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773952008.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.868 kcal (2) G-P(sol) polarization free energy of solvation -65.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds