Wall clock time and date at job start Mon Mar 30 2020 01:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47096 * 2 1 4 4 C 1.50695 * 109.47253 * 239.99632 * 2 1 3 5 5 H 1.07998 * 120.00323 * 245.74614 * 4 2 1 6 6 C 1.37880 * 120.00090 * 65.73959 * 4 2 1 7 7 N 1.31517 * 120.00475 * 195.44318 * 6 4 2 8 8 Si 1.86799 * 119.99645 * 15.72671 * 6 4 2 9 9 H 1.48506 * 109.47246 * 179.71877 * 8 6 4 10 10 H 1.48499 * 109.47184 * 299.72007 * 8 6 4 11 11 H 1.48501 * 109.47394 * 59.72131 * 8 6 4 12 12 N 1.46505 * 109.47223 * 119.99913 * 2 1 3 13 13 C 1.34778 * 119.99767 * 275.00100 * 12 2 1 14 14 O 1.21605 * 120.00076 * 359.97438 * 13 12 2 15 15 C 1.47300 * 119.99979 * 180.02562 * 13 12 2 16 16 F 1.35105 * 119.99554 * 266.75125 * 15 13 12 17 17 C 1.33115 * 119.99949 * 86.74975 * 15 13 12 18 18 C 1.50697 * 120.00301 * 5.40041 * 17 15 13 19 19 C 1.52995 * 109.47265 * 245.53406 * 18 17 15 20 20 C 1.53000 * 109.47414 * 179.97438 * 19 18 17 21 21 C 1.52997 * 109.46912 * 59.99942 * 20 19 18 22 22 C 1.53005 * 109.47246 * 300.00173 * 21 20 19 23 23 C 1.52997 * 109.47037 * 125.53363 * 18 17 15 24 24 H 1.09001 * 109.47424 * 301.61624 * 1 2 3 25 25 H 1.09000 * 109.47398 * 61.61771 * 1 2 3 26 26 H 1.09002 * 109.47426 * 181.61838 * 1 2 3 27 27 H 0.96996 * 119.99598 * 355.07607 * 7 6 4 28 28 H 0.96990 * 120.00216 * 95.00289 * 12 2 1 29 29 H 1.08000 * 119.99579 * 185.39619 * 17 15 13 30 30 H 1.09003 * 109.46639 * 5.53567 * 18 17 15 31 31 H 1.09006 * 109.47119 * 300.00383 * 19 18 17 32 32 H 1.09003 * 109.47013 * 59.99907 * 19 18 17 33 33 H 1.09003 * 109.46615 * 300.00237 * 20 19 18 34 34 H 1.08998 * 109.47024 * 180.02562 * 20 19 18 35 35 H 1.08995 * 109.47202 * 180.02562 * 21 20 19 36 36 H 1.08995 * 109.47294 * 60.00034 * 21 20 19 37 37 H 1.08995 * 109.46860 * 300.00126 * 22 21 20 38 38 H 1.09003 * 109.47132 * 180.02562 * 22 21 20 39 39 H 1.09002 * 109.47063 * 299.99934 * 23 18 17 40 40 H 1.08995 * 109.47294 * 59.99928 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5746 -1.6395 -1.1340 6 6 1.7996 -0.1745 -2.4792 7 7 1.9574 -0.9169 -3.5533 8 14 1.2677 1.6083 -2.6461 9 1 1.0905 1.9397 -4.0828 10 1 -0.0171 1.8108 -1.9294 11 1 2.3067 2.4920 -2.0588 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8582 1.1618 2.4116 15 6 2.6386 -0.7124 3.5598 16 9 1.7615 -1.2570 4.4312 17 6 3.9469 -0.8030 3.7879 18 6 4.9206 -0.0928 2.8832 19 6 5.7657 -1.1243 2.1333 20 6 6.7538 -0.4033 1.2143 21 6 7.6680 0.4933 2.0517 22 6 6.8229 1.5249 2.8017 23 6 5.8347 0.8034 3.7211 24 1 -0.3634 0.5387 0.8751 25 1 -0.3634 0.4885 -0.9041 26 1 -0.3634 -1.0273 0.0290 27 1 2.3058 -1.8186 -3.4727 28 1 2.2491 -1.6317 1.1527 29 1 4.3106 -1.3856 4.6214 30 1 4.3714 0.5175 2.1662 31 1 6.3148 -1.7347 2.8503 32 1 5.1144 -1.7628 1.5363 33 1 6.2043 0.2067 0.4973 34 1 7.3555 -1.1383 0.6797 35 1 8.3716 1.0073 1.3970 36 1 8.2174 -0.1167 2.7687 37 1 6.2735 2.1349 2.0846 38 1 7.4742 2.1639 3.3979 39 1 5.2326 1.5383 4.2553 40 1 6.3838 0.1931 4.4381 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773952009.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:20 Heat of formation + Delta-G solvation = -100.166848 kcal Electronic energy + Delta-G solvation = -21429.351968 eV Core-core repulsion = 18157.532944 eV Total energy + Delta-G solvation = -3271.819024 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.76939 -39.50476 -38.34388 -35.10600 -33.76126 -32.46219 -30.71387 -30.09267 -28.87158 -24.96247 -23.84761 -22.53788 -22.13551 -20.24928 -19.87345 -19.35327 -17.93503 -16.98559 -16.27804 -15.86947 -15.35008 -14.92581 -14.50170 -14.14647 -14.10805 -13.78502 -13.51257 -13.40216 -12.77893 -12.63660 -12.53886 -12.23741 -12.16016 -12.13082 -11.85078 -11.50033 -11.11214 -11.03158 -10.54859 -10.45731 -10.24705 -10.18184 -10.07126 -9.85300 -9.48860 -9.11435 -8.90664 -8.41992 -8.34449 -6.62965 -4.27852 1.62277 2.83538 3.33847 3.40641 3.52264 3.61230 4.36898 4.38683 4.72142 4.79677 4.90461 4.99577 5.13290 5.24129 5.29990 5.34957 5.51757 5.52363 5.54126 5.66941 5.78964 5.93705 6.03135 6.08690 6.16523 6.21812 6.29535 6.31742 6.35297 6.46313 6.46943 6.57660 6.59751 6.86241 7.15623 7.25994 7.52837 8.16327 8.26843 8.54866 8.77508 9.41421 10.78087 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.015571 B = 0.006843 C = 0.005495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.780867 B = 4090.491896 C = 5094.470470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.240 3.760 3 H 0.044 0.956 4 C -0.616 4.616 5 H 0.063 0.937 6 C 0.040 3.960 7 N -0.897 5.897 8 Si 1.040 2.960 9 H -0.283 1.283 10 H -0.270 1.270 11 H -0.279 1.279 12 N -0.682 5.682 13 C 0.535 3.465 14 O -0.535 6.535 15 C 0.021 3.979 16 F -0.133 7.133 17 C -0.149 4.149 18 C -0.058 4.058 19 C -0.107 4.107 20 C -0.122 4.122 21 C -0.118 4.118 22 C -0.121 4.121 23 C -0.105 4.105 24 H 0.030 0.970 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.269 0.731 28 H 0.397 0.603 29 H 0.133 0.867 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.661 -0.018 12.815 15.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.137 3.863 3 H 0.061 0.939 4 C -0.654 4.654 5 H 0.081 0.919 6 C -0.167 4.167 7 N -0.530 5.530 8 Si 0.868 3.132 9 H -0.208 1.208 10 H -0.196 1.196 11 H -0.205 1.205 12 N -0.330 5.330 13 C 0.317 3.683 14 O -0.413 6.413 15 C -0.002 4.002 16 F -0.112 7.112 17 C -0.170 4.170 18 C -0.077 4.077 19 C -0.144 4.144 20 C -0.159 4.159 21 C -0.156 4.156 22 C -0.158 4.158 23 C -0.143 4.143 24 H 0.049 0.951 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.231 0.769 29 H 0.150 0.850 30 H 0.104 0.896 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.934 1.943 11.705 14.274 hybrid contribution 0.385 -1.940 1.386 2.415 sum 8.319 0.003 13.091 15.511 Atomic orbital electron populations 1.22558 0.98620 1.00756 1.00456 1.19129 0.90793 0.94281 0.82080 0.93858 1.22050 1.41904 1.10526 0.90893 0.91880 1.25663 0.94472 1.04882 0.91634 1.70877 1.40383 1.10742 1.30981 0.84130 0.77658 0.75141 0.76318 1.20821 1.19592 1.20524 1.46367 1.63319 1.13794 1.09491 1.18304 0.79140 0.87254 0.83609 1.90807 1.50054 1.15294 1.85123 1.19912 0.88038 1.00788 0.91438 1.91504 1.69205 1.83519 1.66954 1.23560 0.91940 0.99842 1.01620 1.20244 0.94905 0.96377 0.96151 1.21504 0.97498 0.97208 0.98206 1.21537 0.97457 0.98927 0.97999 1.21536 0.97741 0.97497 0.98783 1.21549 0.97707 0.97829 0.98730 1.21492 0.96897 0.98315 0.97589 0.95100 0.91537 0.93416 0.92064 0.76944 0.84964 0.89606 0.91982 0.91435 0.91261 0.91887 0.92165 0.92261 0.91611 0.92031 0.91726 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.73 9.16 37.16 0.34 -3.39 16 2 C 0.24 5.67 2.14 -69.08 -0.15 5.52 16 3 H 0.04 1.10 6.26 -51.93 -0.32 0.78 16 4 C -0.62 -16.19 9.01 -34.44 -0.31 -16.50 16 5 H 0.06 1.73 7.96 -52.49 -0.42 1.31 16 6 C 0.04 1.11 5.35 -17.82 -0.10 1.01 16 7 N -0.90 -26.18 13.70 55.43 0.76 -25.42 16 8 Si 1.04 24.58 26.30 -169.99 -4.47 20.11 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.27 -5.97 5.55 56.52 0.31 -5.65 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 N -0.68 -13.82 5.07 -56.05 -0.28 -14.10 16 13 C 0.53 10.60 5.47 -12.58 -0.07 10.54 16 14 O -0.53 -12.37 16.77 5.27 0.09 -12.28 16 15 C 0.02 0.34 7.19 -37.68 -0.27 0.06 16 16 F -0.13 -2.17 17.27 2.25 0.04 -2.13 16 17 C -0.15 -2.00 8.81 -36.09 -0.32 -2.32 16 18 C -0.06 -0.79 2.28 -91.78 -0.21 -1.00 16 19 C -0.11 -1.32 5.18 -26.73 -0.14 -1.45 16 20 C -0.12 -1.49 5.92 -26.73 -0.16 -1.65 16 21 C -0.12 -1.24 5.92 -26.73 -0.16 -1.40 16 22 C -0.12 -1.33 5.93 -26.70 -0.16 -1.49 16 23 C -0.11 -1.21 5.19 -26.71 -0.14 -1.35 16 24 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 1.52 4.65 -51.93 -0.24 1.28 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.27 7.77 8.73 -40.82 -0.36 7.42 16 28 H 0.40 7.25 8.51 -40.82 -0.35 6.90 16 29 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 30 H 0.09 1.45 6.35 -51.93 -0.33 1.12 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 324.63 15.07 4.89 4.89 Total: -1.00 -29.44 324.63 -7.21 -36.65 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -6.40 Total: 5.70 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: -1.83 Total: -13.42 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.48 Total: -39.52 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.09 Total: -12.28 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 24.58 SS G_CDS: -4.47 Total: 20.11 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.44 -7.21 -36.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773952009.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.516 kcal (2) G-P(sol) polarization free energy of solvation -29.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds