Wall clock time and date at job start Mon Mar 30 2020 01:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47096 * 2 1 4 4 C 1.50695 * 109.47253 * 239.99632 * 2 1 3 5 5 H 1.07998 * 120.00323 * 245.74614 * 4 2 1 6 6 C 1.37880 * 120.00090 * 65.73959 * 4 2 1 7 7 N 1.31517 * 120.00475 * 195.44318 * 6 4 2 8 8 Si 1.86799 * 119.99645 * 15.72671 * 6 4 2 9 9 H 1.48506 * 109.47246 * 179.71877 * 8 6 4 10 10 H 1.48499 * 109.47184 * 299.72007 * 8 6 4 11 11 H 1.48501 * 109.47394 * 59.72131 * 8 6 4 12 12 N 1.46505 * 109.47223 * 119.99913 * 2 1 3 13 13 C 1.34778 * 119.99767 * 275.00100 * 12 2 1 14 14 O 1.21605 * 120.00076 * 359.97438 * 13 12 2 15 15 C 1.47300 * 119.99979 * 180.02562 * 13 12 2 16 16 F 1.35105 * 119.99554 * 266.75125 * 15 13 12 17 17 C 1.33115 * 119.99949 * 86.74975 * 15 13 12 18 18 C 1.50697 * 120.00301 * 5.40041 * 17 15 13 19 19 C 1.52995 * 109.47265 * 245.53406 * 18 17 15 20 20 C 1.53000 * 109.47414 * 179.97438 * 19 18 17 21 21 C 1.52997 * 109.46912 * 59.99942 * 20 19 18 22 22 C 1.53005 * 109.47246 * 300.00173 * 21 20 19 23 23 C 1.52997 * 109.47037 * 125.53363 * 18 17 15 24 24 H 1.09001 * 109.47424 * 301.61624 * 1 2 3 25 25 H 1.09000 * 109.47398 * 61.61771 * 1 2 3 26 26 H 1.09002 * 109.47426 * 181.61838 * 1 2 3 27 27 H 0.96996 * 119.99598 * 355.07607 * 7 6 4 28 28 H 0.96990 * 120.00216 * 95.00289 * 12 2 1 29 29 H 1.08000 * 119.99579 * 185.39619 * 17 15 13 30 30 H 1.09003 * 109.46639 * 5.53567 * 18 17 15 31 31 H 1.09006 * 109.47119 * 300.00383 * 19 18 17 32 32 H 1.09003 * 109.47013 * 59.99907 * 19 18 17 33 33 H 1.09003 * 109.46615 * 300.00237 * 20 19 18 34 34 H 1.08998 * 109.47024 * 180.02562 * 20 19 18 35 35 H 1.08995 * 109.47202 * 180.02562 * 21 20 19 36 36 H 1.08995 * 109.47294 * 60.00034 * 21 20 19 37 37 H 1.08995 * 109.46860 * 300.00126 * 22 21 20 38 38 H 1.09003 * 109.47132 * 180.02562 * 22 21 20 39 39 H 1.09002 * 109.47063 * 299.99934 * 23 18 17 40 40 H 1.08995 * 109.47294 * 59.99928 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5746 -1.6395 -1.1340 6 6 1.7996 -0.1745 -2.4792 7 7 1.9574 -0.9169 -3.5533 8 14 1.2677 1.6083 -2.6461 9 1 1.0905 1.9397 -4.0828 10 1 -0.0171 1.8108 -1.9294 11 1 2.3067 2.4920 -2.0588 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8582 1.1618 2.4116 15 6 2.6386 -0.7124 3.5598 16 9 1.7615 -1.2570 4.4312 17 6 3.9469 -0.8030 3.7879 18 6 4.9206 -0.0928 2.8832 19 6 5.7657 -1.1243 2.1333 20 6 6.7538 -0.4033 1.2143 21 6 7.6680 0.4933 2.0517 22 6 6.8229 1.5249 2.8017 23 6 5.8347 0.8034 3.7211 24 1 -0.3634 0.5387 0.8751 25 1 -0.3634 0.4885 -0.9041 26 1 -0.3634 -1.0273 0.0290 27 1 2.3058 -1.8186 -3.4727 28 1 2.2491 -1.6317 1.1527 29 1 4.3106 -1.3856 4.6214 30 1 4.3714 0.5175 2.1662 31 1 6.3148 -1.7347 2.8503 32 1 5.1144 -1.7628 1.5363 33 1 6.2043 0.2067 0.4973 34 1 7.3555 -1.1383 0.6797 35 1 8.3716 1.0073 1.3970 36 1 8.2174 -0.1167 2.7687 37 1 6.2735 2.1349 2.0846 38 1 7.4742 2.1639 3.3979 39 1 5.2326 1.5383 4.2553 40 1 6.3838 0.1931 4.4381 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773952009.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:19 Heat of formation + Delta-G solvation = -118.065024 kcal Electronic energy + Delta-G solvation = -21430.128091 eV Core-core repulsion = 18157.532944 eV Total energy + Delta-G solvation = -3272.595147 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.99998 -41.01680 -39.48256 -36.96649 -34.98461 -34.41665 -31.79611 -31.63651 -30.12102 -26.95776 -25.26460 -23.48952 -23.35749 -22.02158 -21.03531 -20.76805 -19.66449 -18.59979 -17.64456 -17.36258 -16.44619 -16.37745 -16.03523 -15.45745 -15.27455 -15.08805 -15.01006 -14.72810 -14.54342 -14.30014 -13.90153 -13.66107 -13.57135 -13.41852 -13.14551 -13.10285 -12.48325 -12.06287 -12.04898 -11.99270 -11.68860 -11.40868 -11.24128 -11.18596 -11.13186 -11.06448 -10.53011 -10.14347 -10.08757 -8.82762 -6.47992 0.42721 1.26386 1.43269 1.48498 1.66982 2.08385 2.39042 2.99252 3.21610 3.46148 3.73453 3.84410 4.00384 4.21198 4.33142 4.35036 4.41057 4.53664 4.56616 4.60774 4.63650 4.68336 4.71566 4.77893 4.89096 4.98211 5.11119 5.14579 5.23537 5.24534 5.34730 5.37279 5.38903 5.39763 5.43608 5.55073 5.56847 5.97004 6.46917 6.53011 7.03941 7.28171 8.57808 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.015571 B = 0.006843 C = 0.005495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.780867 B = 4090.491896 C = 5094.470470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.243 3.757 3 H 0.027 0.973 4 C -0.609 4.609 5 H 0.043 0.957 6 C -0.002 4.002 7 N -0.926 5.926 8 Si 1.068 2.932 9 H -0.281 1.281 10 H -0.245 1.245 11 H -0.273 1.273 12 N -0.681 5.681 13 C 0.538 3.462 14 O -0.572 6.572 15 C -0.010 4.010 16 F -0.133 7.133 17 C -0.105 4.105 18 C -0.064 4.064 19 C -0.103 4.103 20 C -0.125 4.125 21 C -0.112 4.112 22 C -0.122 4.122 23 C -0.101 4.101 24 H 0.038 0.962 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.259 0.741 28 H 0.406 0.594 29 H 0.175 0.825 30 H 0.044 0.956 31 H 0.094 0.906 32 H 0.049 0.951 33 H 0.034 0.966 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.039 0.961 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.968 -0.200 15.133 18.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.139 3.861 3 H 0.045 0.955 4 C -0.647 4.647 5 H 0.062 0.938 6 C -0.203 4.203 7 N -0.560 5.560 8 Si 0.890 3.110 9 H -0.206 1.206 10 H -0.169 1.169 11 H -0.199 1.199 12 N -0.329 5.329 13 C 0.322 3.678 14 O -0.453 6.453 15 C -0.032 4.032 16 F -0.112 7.112 17 C -0.125 4.125 18 C -0.083 4.083 19 C -0.141 4.141 20 C -0.162 4.162 21 C -0.150 4.150 22 C -0.159 4.159 23 C -0.139 4.139 24 H 0.057 0.943 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.241 0.759 29 H 0.192 0.808 30 H 0.062 0.938 31 H 0.113 0.887 32 H 0.067 0.933 33 H 0.052 0.948 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.057 0.943 38 H 0.101 0.899 39 H 0.076 0.924 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.242 1.731 14.047 16.904 hybrid contribution 0.091 -1.925 0.684 2.045 sum 9.332 -0.194 14.732 17.440 Atomic orbital electron populations 1.22452 0.97401 1.01272 1.00646 1.18860 0.91615 0.93238 0.82394 0.95528 1.22176 1.40800 1.09651 0.92119 0.93834 1.26756 0.94406 1.07483 0.91637 1.70977 1.42556 1.10622 1.31881 0.83774 0.78807 0.71654 0.76718 1.20630 1.16948 1.19883 1.46191 1.63475 1.14143 1.09104 1.18795 0.77823 0.86812 0.84321 1.90771 1.51542 1.17101 1.85880 1.19419 0.88855 1.03853 0.91113 1.91503 1.69399 1.83707 1.66565 1.23958 0.90464 0.96933 1.01151 1.20316 0.95288 0.96707 0.95969 1.21492 0.97242 0.96806 0.98516 1.21551 0.97692 0.99104 0.97868 1.21516 0.97281 0.97219 0.98967 1.21568 0.97841 0.98049 0.98490 1.21499 0.96600 0.98138 0.97637 0.94334 0.91801 0.92795 0.93184 0.75884 0.80767 0.93801 0.88731 0.93257 0.94751 0.90985 0.91679 0.89837 0.94257 0.89868 0.92402 0.88715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.10 9.16 71.98 0.66 -6.44 16 2 C 0.24 11.59 2.14 44.24 0.09 11.69 16 3 H 0.03 1.38 6.26 -2.39 -0.01 1.36 16 4 C -0.61 -32.70 9.01 25.60 0.23 -32.47 16 5 H 0.04 2.46 7.96 -2.91 -0.02 2.43 16 6 C 0.00 -0.09 5.35 84.65 0.45 0.36 16 7 N -0.93 -55.16 13.70 21.45 0.29 -54.87 16 8 Si 1.07 49.61 26.30 68.60 1.80 51.41 16 9 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 10 H -0.24 -10.34 5.55 99.48 0.55 -9.79 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 12 N -0.68 -27.89 5.07 -449.51 -2.28 -30.17 16 13 C 0.54 21.42 5.47 86.63 0.47 21.89 16 14 O -0.57 -26.87 16.77 -4.05 -0.07 -26.94 16 15 C -0.01 -0.32 7.19 23.50 0.17 -0.15 16 16 F -0.13 -4.10 17.27 44.97 0.78 -3.33 16 17 C -0.11 -2.52 8.81 24.53 0.22 -2.31 16 18 C -0.06 -1.62 2.28 -11.54 -0.03 -1.65 16 19 C -0.10 -2.35 5.18 30.59 0.16 -2.19 16 20 C -0.12 -2.94 5.92 30.59 0.18 -2.76 16 21 C -0.11 -2.08 5.92 30.59 0.18 -1.90 16 22 C -0.12 -2.45 5.93 30.61 0.18 -2.27 16 23 C -0.10 -2.04 5.19 30.61 0.16 -1.88 16 24 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.06 2.85 4.65 -2.39 -0.01 2.84 16 26 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.26 15.44 8.73 -92.71 -0.81 14.63 16 28 H 0.41 14.99 8.51 -92.72 -0.79 14.20 16 29 H 0.18 2.81 8.06 -2.91 -0.02 2.78 16 30 H 0.04 1.51 6.35 -2.39 -0.02 1.49 16 31 H 0.09 1.57 8.14 -2.38 -0.02 1.56 16 32 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -65.18 324.63 3.71 -61.47 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.05 Total: 22.51 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: 3.13 Total: -20.08 kcal Atomic # 7 Polarization: -83.06 SS G_CDS: -1.98 Total: -85.04 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.07 Total: -26.94 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.78 Total: -3.33 kcal Atomic # 14 Polarization: 49.61 SS G_CDS: 1.80 Total: 51.41 kcal Total: -65.18 3.71 -61.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773952009.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.597 kcal (2) G-P(sol) polarization free energy of solvation -65.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds