Wall clock time and date at job start Mon Mar 30 2020 01:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 239.99664 * 2 1 3 5 5 H 1.07994 * 120.00496 * 239.99942 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00100 * 4 2 1 7 7 N 1.31518 * 120.00216 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00016 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47195 * 90.00222 * 8 6 4 10 10 H 1.48504 * 109.47636 * 210.00509 * 8 6 4 11 11 H 1.48508 * 109.47108 * 330.00152 * 8 6 4 12 12 N 1.46500 * 109.46998 * 119.99945 * 2 1 3 13 13 C 1.34779 * 119.99741 * 275.00368 * 12 2 1 14 14 O 1.21602 * 120.00398 * 359.97438 * 13 12 2 15 15 C 1.47301 * 119.99563 * 180.02562 * 13 12 2 16 16 F 1.35101 * 120.00514 * 359.97438 * 15 13 12 17 17 C 1.33118 * 119.99891 * 180.02562 * 15 13 12 18 18 C 1.50699 * 120.00074 * 179.97438 * 17 15 13 19 19 C 1.52996 * 109.47242 * 239.99483 * 18 17 15 20 20 C 1.53002 * 109.47087 * 179.97438 * 19 18 17 21 21 C 1.52997 * 109.46920 * 60.00509 * 20 19 18 22 22 C 1.53003 * 109.47067 * 299.99519 * 21 20 19 23 23 C 1.53002 * 109.46858 * 60.00443 * 22 21 20 24 24 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 27 27 H 0.96999 * 120.00239 * 180.02562 * 7 6 4 28 28 H 0.96997 * 120.00110 * 94.99637 * 12 2 1 29 29 H 1.08005 * 120.00050 * 359.97438 * 17 15 13 30 30 H 1.08998 * 109.47211 * 359.97438 * 18 17 15 31 31 H 1.08998 * 109.47296 * 300.00290 * 19 18 17 32 32 H 1.09006 * 109.47057 * 60.00486 * 19 18 17 33 33 H 1.08996 * 109.47201 * 299.99815 * 20 19 18 34 34 H 1.08999 * 109.46781 * 180.02562 * 20 19 18 35 35 H 1.09001 * 109.46835 * 180.02562 * 21 20 19 36 36 H 1.08998 * 109.47247 * 59.99759 * 21 20 19 37 37 H 1.08998 * 109.47283 * 300.00218 * 22 21 20 38 38 H 1.08998 * 109.46719 * 180.02562 * 22 21 20 39 39 H 1.08992 * 109.47102 * 179.97438 * 23 22 21 40 40 H 1.08998 * 109.47357 * 59.99820 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.3448 -2.1616 -4.4123 10 1 2.4875 -0.1403 -5.1120 11 1 3.6310 -1.7566 -3.7118 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8582 1.1618 2.4117 15 6 2.6385 -0.7125 3.5597 16 9 2.9599 -2.0233 3.4991 17 6 2.7651 -0.0485 4.7065 18 6 3.2674 -0.7589 5.9370 19 6 2.2046 -0.6898 7.0354 20 6 2.7143 -1.4116 8.2845 21 6 3.9982 -0.7387 8.7741 22 6 5.0611 -0.8078 7.6757 23 6 4.5513 -0.0860 6.4266 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.7090 1.1614 -3.4844 28 1 2.2490 -1.6317 1.1527 29 1 2.5078 0.9993 4.7552 30 1 3.4730 -1.8019 5.6960 31 1 1.9986 0.3530 7.2766 32 1 1.2900 -1.1697 6.6868 33 1 2.9199 -2.4544 8.0430 34 1 1.9569 -1.3627 9.0668 35 1 4.3616 -1.2532 9.6636 36 1 3.7925 0.3041 9.0155 37 1 5.2667 -1.8506 7.4342 38 1 5.9758 -0.3287 8.0247 39 1 5.3086 -0.1348 5.6443 40 1 4.3456 0.9568 6.6681 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773952010.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:21 Heat of formation + Delta-G solvation = -104.793306 kcal Electronic energy + Delta-G solvation = -20485.314032 eV Core-core repulsion = 17213.294390 eV Total energy + Delta-G solvation = -3272.019642 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.69923 -39.06957 -38.63441 -35.01791 -33.41737 -32.41857 -30.93059 -29.86118 -28.66591 -25.29929 -24.09324 -22.73524 -21.74917 -20.15372 -19.84562 -19.34656 -18.02259 -16.21912 -16.06250 -15.52796 -15.46701 -15.09634 -14.43822 -14.33849 -14.33439 -13.80389 -13.55038 -13.13096 -12.80147 -12.69211 -12.44436 -12.37353 -12.23367 -11.73778 -11.32370 -11.21136 -11.13844 -10.97765 -10.79979 -10.64494 -10.41149 -10.40668 -10.36453 -10.26085 -9.30147 -9.09304 -8.92258 -8.59229 -8.01273 -6.14938 -4.24444 1.43446 3.23967 3.30596 3.33204 3.65935 3.73842 4.32348 4.48760 4.52864 4.59939 4.75127 4.95857 5.08519 5.11003 5.17707 5.26194 5.31664 5.34098 5.45398 5.50263 5.62844 5.78835 5.83102 5.95275 5.96132 5.99861 6.14148 6.14669 6.34923 6.56276 6.79289 6.91243 7.09213 7.33183 7.50267 7.65709 7.86004 8.09761 8.53444 8.69563 8.94417 9.42618 10.91159 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.042576 B = 0.003456 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.486621 B = 8100.519119 C = 8325.722749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.263 3.737 3 H 0.052 0.948 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.904 3.096 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.694 5.694 13 C 0.530 3.470 14 O -0.539 6.539 15 C 0.009 3.991 16 F -0.142 7.142 17 C -0.123 4.123 18 C -0.063 4.063 19 C -0.110 4.110 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.110 4.110 24 H 0.092 0.908 25 H 0.028 0.972 26 H 0.016 0.984 27 H 0.265 0.735 28 H 0.394 0.606 29 H 0.149 0.851 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.895 -4.450 19.303 20.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.161 3.839 3 H 0.070 0.930 4 C -0.574 4.574 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.341 5.341 13 C 0.314 3.686 14 O -0.419 6.419 15 C -0.013 4.013 16 F -0.121 7.121 17 C -0.144 4.144 18 C -0.081 4.081 19 C -0.148 4.148 20 C -0.156 4.156 21 C -0.158 4.158 22 C -0.157 4.157 23 C -0.148 4.148 24 H 0.111 0.889 25 H 0.047 0.953 26 H 0.035 0.965 27 H 0.075 0.925 28 H 0.227 0.773 29 H 0.166 0.834 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.600 -3.536 19.110 19.971 hybrid contribution 0.419 -1.152 -0.969 1.563 sum 5.018 -4.688 18.141 19.398 Atomic orbital electron populations 1.22090 0.98135 0.99336 1.01076 1.18856 0.91258 0.94062 0.79694 0.93040 1.21210 1.32637 1.13345 0.90223 0.91935 1.24888 0.94761 0.94927 0.99087 1.69899 1.35832 1.22366 1.23984 0.86414 0.79226 0.79255 0.82022 1.20487 1.21018 1.19790 1.46539 1.63324 1.13943 1.10273 1.18263 0.79823 0.87126 0.83418 1.90786 1.51863 1.14756 1.84514 1.20193 1.05807 0.78746 0.96572 1.91432 1.90617 1.33102 1.96918 1.23800 0.96950 1.01458 0.92237 1.20282 0.95520 0.99959 0.92341 1.21531 0.97680 1.01309 0.94240 1.21533 0.97193 0.99680 0.97242 1.21553 0.95456 1.00942 0.97837 1.21534 0.98026 1.00859 0.95232 1.21530 0.96159 0.99723 0.97361 0.88906 0.95301 0.96535 0.92499 0.77279 0.83351 0.89987 0.91461 0.91671 0.91946 0.91927 0.92215 0.91933 0.91943 0.91916 0.91633 0.91463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.26 37.16 0.34 -3.37 16 2 C 0.26 6.79 2.56 -69.08 -0.18 6.61 16 3 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 4 C -0.54 -14.39 8.73 -34.44 -0.30 -14.69 16 5 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -24.90 11.32 55.43 0.63 -24.27 16 8 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 12 N -0.69 -15.21 5.07 -56.05 -0.28 -15.50 16 13 C 0.53 11.06 7.74 -12.57 -0.10 10.96 16 14 O -0.54 -12.85 15.89 5.28 0.08 -12.76 16 15 C 0.01 0.15 7.37 -37.68 -0.28 -0.13 16 16 F -0.14 -2.24 15.54 2.25 0.03 -2.20 16 17 C -0.12 -1.72 8.35 -36.09 -0.30 -2.02 16 18 C -0.06 -0.69 2.45 -91.77 -0.23 -0.91 16 19 C -0.11 -1.05 5.19 -26.73 -0.14 -1.19 16 20 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 21 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 22 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 23 C -0.11 -1.06 5.19 -26.73 -0.14 -1.20 16 24 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 25 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.27 7.06 8.31 -40.82 -0.34 6.73 16 28 H 0.39 7.78 8.09 -40.82 -0.33 7.45 16 29 H 0.15 2.10 7.50 -52.48 -0.39 1.71 16 30 H 0.08 0.95 7.02 -51.93 -0.36 0.59 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 328.58 15.07 4.95 4.95 Total: -1.00 -29.18 328.58 -7.90 -37.08 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -6.41 Total: 4.51 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -1.88 Total: -7.52 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 0.34 Total: -39.77 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.08 Total: -12.76 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.03 Total: -2.20 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.18 -7.90 -37.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773952010.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.717 kcal (2) G-P(sol) polarization free energy of solvation -29.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds