Wall clock time and date at job start Mon Mar 30 2020 01:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 239.99664 * 2 1 3 5 5 H 1.07994 * 120.00496 * 239.99942 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00100 * 4 2 1 7 7 N 1.31518 * 120.00216 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00016 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47195 * 90.00222 * 8 6 4 10 10 H 1.48504 * 109.47636 * 210.00509 * 8 6 4 11 11 H 1.48508 * 109.47108 * 330.00152 * 8 6 4 12 12 N 1.46500 * 109.46998 * 119.99945 * 2 1 3 13 13 C 1.34779 * 119.99741 * 275.00368 * 12 2 1 14 14 O 1.21602 * 120.00398 * 359.97438 * 13 12 2 15 15 C 1.47301 * 119.99563 * 180.02562 * 13 12 2 16 16 F 1.35101 * 120.00514 * 359.97438 * 15 13 12 17 17 C 1.33118 * 119.99891 * 180.02562 * 15 13 12 18 18 C 1.50699 * 120.00074 * 179.97438 * 17 15 13 19 19 C 1.52996 * 109.47242 * 239.99483 * 18 17 15 20 20 C 1.53002 * 109.47087 * 179.97438 * 19 18 17 21 21 C 1.52997 * 109.46920 * 60.00509 * 20 19 18 22 22 C 1.53003 * 109.47067 * 299.99519 * 21 20 19 23 23 C 1.53002 * 109.46858 * 60.00443 * 22 21 20 24 24 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 27 27 H 0.96999 * 120.00239 * 180.02562 * 7 6 4 28 28 H 0.96997 * 120.00110 * 94.99637 * 12 2 1 29 29 H 1.08005 * 120.00050 * 359.97438 * 17 15 13 30 30 H 1.08998 * 109.47211 * 359.97438 * 18 17 15 31 31 H 1.08998 * 109.47296 * 300.00290 * 19 18 17 32 32 H 1.09006 * 109.47057 * 60.00486 * 19 18 17 33 33 H 1.08996 * 109.47201 * 299.99815 * 20 19 18 34 34 H 1.08999 * 109.46781 * 180.02562 * 20 19 18 35 35 H 1.09001 * 109.46835 * 180.02562 * 21 20 19 36 36 H 1.08998 * 109.47247 * 59.99759 * 21 20 19 37 37 H 1.08998 * 109.47283 * 300.00218 * 22 21 20 38 38 H 1.08998 * 109.46719 * 180.02562 * 22 21 20 39 39 H 1.08992 * 109.47102 * 179.97438 * 23 22 21 40 40 H 1.08998 * 109.47357 * 59.99820 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.3448 -2.1616 -4.4123 10 1 2.4875 -0.1403 -5.1120 11 1 3.6310 -1.7566 -3.7118 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8582 1.1618 2.4117 15 6 2.6385 -0.7125 3.5597 16 9 2.9599 -2.0233 3.4991 17 6 2.7651 -0.0485 4.7065 18 6 3.2674 -0.7589 5.9370 19 6 2.2046 -0.6898 7.0354 20 6 2.7143 -1.4116 8.2845 21 6 3.9982 -0.7387 8.7741 22 6 5.0611 -0.8078 7.6757 23 6 4.5513 -0.0860 6.4266 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.7090 1.1614 -3.4844 28 1 2.2490 -1.6317 1.1527 29 1 2.5078 0.9993 4.7552 30 1 3.4730 -1.8019 5.6960 31 1 1.9986 0.3530 7.2766 32 1 1.2900 -1.1697 6.6868 33 1 2.9199 -2.4544 8.0430 34 1 1.9569 -1.3627 9.0668 35 1 4.3616 -1.2532 9.6636 36 1 3.7925 0.3041 9.0155 37 1 5.2667 -1.8506 7.4342 38 1 5.9758 -0.3287 8.0247 39 1 5.3086 -0.1348 5.6443 40 1 4.3456 0.9568 6.6681 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773952010.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:21 Heat of formation + Delta-G solvation = -121.028117 kcal Electronic energy + Delta-G solvation = -20486.018027 eV Core-core repulsion = 17213.294390 eV Total energy + Delta-G solvation = -3272.723636 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.96065 -40.68490 -39.54954 -36.92173 -34.51384 -34.37872 -31.62545 -31.40566 -30.13069 -27.39360 -25.40036 -23.43223 -23.11666 -21.68369 -20.82941 -20.75657 -19.57185 -17.97905 -17.58218 -16.93834 -16.82930 -16.34846 -16.07944 -15.48752 -15.22702 -15.04100 -14.95752 -14.46974 -14.32116 -13.87769 -13.77433 -13.54864 -13.18829 -13.06498 -13.02697 -12.91855 -12.76975 -12.33612 -12.17312 -12.00571 -11.96748 -11.37314 -11.25160 -11.17287 -11.14621 -10.90327 -10.64415 -10.21062 -9.84428 -8.21439 -6.39479 0.10118 1.43894 1.44583 1.55445 2.04529 2.15484 2.42934 3.08870 3.26350 3.55314 3.75786 3.88250 4.02260 4.20797 4.27510 4.38544 4.56741 4.61076 4.64545 4.67417 4.70826 4.79811 4.86613 4.99570 5.02147 5.16699 5.23213 5.27197 5.28479 5.32866 5.34155 5.41332 5.43719 5.51431 5.59994 5.63096 5.82834 6.02837 6.64907 6.73701 7.16321 7.34938 8.85056 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.042576 B = 0.003456 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.486621 B = 8100.519119 C = 8325.722749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.269 3.731 3 H 0.007 0.993 4 C -0.553 4.553 5 H 0.071 0.929 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.975 3.025 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.266 1.266 12 N -0.696 5.696 13 C 0.529 3.471 14 O -0.576 6.576 15 C -0.015 4.015 16 F -0.137 7.137 17 C -0.081 4.081 18 C -0.062 4.062 19 C -0.110 4.110 20 C -0.117 4.117 21 C -0.119 4.119 22 C -0.117 4.117 23 C -0.110 4.110 24 H 0.072 0.928 25 H 0.040 0.960 26 H 0.016 0.984 27 H 0.268 0.732 28 H 0.405 0.595 29 H 0.148 0.852 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.797 -5.762 20.734 22.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.166 3.834 3 H 0.025 0.975 4 C -0.591 4.591 5 H 0.089 0.911 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.799 3.201 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.190 1.190 12 N -0.343 5.343 13 C 0.315 3.685 14 O -0.459 6.459 15 C -0.037 4.037 16 F -0.116 7.116 17 C -0.103 4.103 18 C -0.080 4.080 19 C -0.147 4.147 20 C -0.154 4.154 21 C -0.157 4.157 22 C -0.154 4.154 23 C -0.148 4.148 24 H 0.090 0.910 25 H 0.059 0.941 26 H 0.035 0.965 27 H 0.077 0.923 28 H 0.240 0.760 29 H 0.165 0.835 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.513 -4.879 20.569 21.847 hybrid contribution 0.146 -0.678 -1.304 1.477 sum 5.659 -5.558 19.265 20.834 Atomic orbital electron populations 1.21916 0.97806 0.99642 0.99998 1.18490 0.91493 0.92138 0.81303 0.97536 1.21515 1.33021 1.13729 0.90835 0.91109 1.25793 0.94751 0.95545 1.02260 1.70036 1.36740 1.23699 1.24824 0.85307 0.78942 0.78075 0.77791 1.19536 1.20895 1.18986 1.46313 1.63788 1.14392 1.09790 1.18827 0.78716 0.86824 0.84127 1.90756 1.53437 1.16418 1.85287 1.19528 1.09460 0.79358 0.95389 1.91441 1.90918 1.32402 1.96819 1.24166 0.92556 1.01203 0.92331 1.20404 0.96752 0.99517 0.91349 1.21543 0.96854 1.01943 0.94377 1.21525 0.97841 0.99435 0.96594 1.21561 0.94830 1.01287 0.97986 1.21526 0.98678 1.00683 0.94514 1.21543 0.95017 1.00139 0.98065 0.90972 0.94126 0.96528 0.92328 0.75974 0.83464 0.90202 0.90945 0.92227 0.91957 0.90770 0.90927 0.91601 0.91964 0.90815 0.92326 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.95 9.26 71.98 0.67 -6.28 16 2 C 0.27 14.30 2.56 44.25 0.11 14.41 16 3 H 0.01 0.42 7.58 -2.39 -0.02 0.40 16 4 C -0.55 -29.96 8.73 25.60 0.22 -29.74 16 5 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 6 C 0.02 0.92 5.30 84.65 0.45 1.37 16 7 N -0.92 -52.50 11.32 21.45 0.24 -52.26 16 8 Si 0.97 42.32 29.54 68.60 2.03 44.34 16 9 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 10 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 12 N -0.70 -31.04 5.07 -449.50 -2.28 -33.31 16 13 C 0.53 22.48 7.74 86.63 0.67 23.15 16 14 O -0.58 -28.33 15.89 -4.04 -0.06 -28.39 16 15 C -0.02 -0.50 7.37 23.51 0.17 -0.32 16 16 F -0.14 -4.20 15.54 44.97 0.70 -3.50 16 17 C -0.08 -2.18 8.35 24.53 0.20 -1.98 16 18 C -0.06 -1.24 2.45 -11.54 -0.03 -1.27 16 19 C -0.11 -1.86 5.19 30.59 0.16 -1.70 16 20 C -0.12 -1.55 5.92 30.59 0.18 -1.37 16 21 C -0.12 -1.42 5.92 30.59 0.18 -1.24 16 22 C -0.12 -1.57 5.92 30.60 0.18 -1.39 16 23 C -0.11 -1.89 5.19 30.60 0.16 -1.74 16 24 H 0.07 4.02 6.07 -2.39 -0.01 4.00 16 25 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.27 14.45 8.31 -92.71 -0.77 13.67 16 28 H 0.41 16.05 8.09 -92.71 -0.75 15.30 16 29 H 0.15 4.04 7.50 -2.91 -0.02 4.02 16 30 H 0.08 1.70 7.02 -2.39 -0.02 1.68 16 31 H 0.07 1.16 8.14 -2.39 -0.02 1.15 16 32 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -63.33 328.58 4.23 -59.09 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 0.27 Total: 22.13 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 3.33 Total: -8.10 kcal Atomic # 7 Polarization: -83.54 SS G_CDS: -2.03 Total: -85.57 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -0.06 Total: -28.39 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.70 Total: -3.50 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.34 kcal Total: -63.33 4.23 -59.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773952010.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.934 kcal (2) G-P(sol) polarization free energy of solvation -63.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds