Wall clock time and date at job start Mon Mar 30 2020 01:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00022 * 2 1 4 4 H 1.48506 * 109.47238 * 240.00367 * 3 2 1 5 5 H 1.48500 * 109.46997 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47310 * 120.00037 * 3 2 1 7 7 C 1.37877 * 120.00369 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00142 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99924 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47283 * 180.02562 * 9 7 2 11 11 N 1.46907 * 109.47147 * 180.02562 * 10 9 7 12 12 C 1.46896 * 110.99997 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47059 * 179.97438 * 12 11 10 14 14 C 1.53006 * 109.46139 * 185.00071 * 13 12 11 15 15 C 1.53023 * 109.45886 * 179.83705 * 14 13 12 16 16 C 1.52966 * 109.42588 * 59.79693 * 15 14 13 17 17 C 1.52958 * 109.82149 * 300.29333 * 16 15 14 18 18 C 1.52989 * 109.46497 * 64.95756 * 13 12 11 19 19 O 1.43705 * 109.40502 * 60.40488 * 16 15 14 20 20 C 1.44788 * 104.79514 * 95.49270 * 19 16 15 21 21 C 1.54915 * 101.72585 * 36.06411 * 20 19 16 22 22 O 1.43302 * 109.64812 * 179.72133 * 16 15 14 23 23 H 0.96995 * 119.99819 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.46819 * 60.00422 * 9 7 2 25 25 H 1.09001 * 109.47327 * 300.00656 * 9 7 2 26 26 H 1.09005 * 109.47103 * 60.00284 * 10 9 7 27 27 H 1.08996 * 109.47285 * 299.99922 * 10 9 7 28 28 H 1.00897 * 110.99823 * 303.95302 * 11 10 9 29 29 H 1.09005 * 109.46849 * 60.00005 * 12 11 10 30 30 H 1.09001 * 109.47115 * 300.00368 * 12 11 10 31 31 H 1.09003 * 109.45841 * 304.97821 * 13 12 11 32 32 H 1.08992 * 109.47533 * 299.83703 * 14 13 12 33 33 H 1.08996 * 109.47129 * 59.84506 * 14 13 12 34 34 H 1.09000 * 109.47736 * 179.78362 * 15 14 13 35 35 H 1.08997 * 109.47868 * 299.81519 * 15 14 13 36 36 H 1.08999 * 109.47850 * 299.70494 * 17 16 15 37 37 H 1.08997 * 109.47567 * 179.67590 * 17 16 15 38 38 H 1.08999 * 109.46816 * 300.15684 * 18 13 12 39 39 H 1.09003 * 109.47242 * 60.15094 * 18 13 12 40 40 H 1.08998 * 110.97647 * 277.95853 * 20 19 16 41 41 H 1.09000 * 111.01004 * 154.18985 * 20 19 16 42 42 H 1.09001 * 110.69841 * 206.07713 * 21 20 19 43 43 H 1.09010 * 110.69055 * 82.87461 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5109 -4.9343 -0.0012 12 6 2.4354 -6.0758 -0.0018 13 6 1.6353 -7.3800 -0.0018 14 6 2.5938 -8.5660 0.1233 15 6 1.7933 -9.8702 0.1274 16 6 1.0003 -9.9844 -1.1756 17 6 0.0446 -8.7974 -1.3069 18 6 0.8478 -7.4950 -1.3083 19 8 1.9092 -9.9914 -2.2887 20 6 2.1188 -11.3929 -2.5860 21 6 0.7177 -11.9885 -2.2996 22 8 0.2536 -11.2075 -1.1796 23 1 -0.4849 0.8400 -0.0004 24 1 0.6242 -2.5567 -0.8904 25 1 0.6247 -2.5571 0.8896 26 1 2.8721 -3.6043 0.8895 27 1 2.8721 -3.6043 -0.8905 28 1 0.8743 -4.9846 0.7800 29 1 3.0634 -6.0352 0.8882 30 1 3.0634 -6.0343 -0.8918 31 1 0.9436 -7.3816 0.8406 32 1 3.2841 -8.5660 -0.7202 33 1 3.1563 -8.4821 1.0531 34 1 2.4761 -10.7155 0.2127 35 1 1.1054 -9.8717 0.9729 36 1 -0.6499 -8.7952 -0.4668 37 1 -0.5132 -8.8814 -2.2395 38 1 0.1671 -6.6484 -1.3979 39 1 1.5396 -7.4956 -2.1507 40 1 2.8691 -11.8243 -1.9234 41 1 2.3966 -11.5334 -3.6306 42 1 0.7947 -13.0417 -2.0294 43 1 0.0604 -11.8573 -3.1593 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795959244.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:29 Heat of formation + Delta-G solvation = -116.032041 kcal Electronic energy + Delta-G solvation = -20992.810151 eV Core-core repulsion = 17843.763466 eV Total energy + Delta-G solvation = -3149.046685 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.04523 -37.89093 -35.40782 -35.12140 -32.96328 -31.30851 -30.89432 -29.36048 -27.89782 -24.80697 -23.58733 -23.19224 -22.60471 -20.99214 -20.49755 -19.58419 -17.36092 -16.98906 -16.27241 -15.72102 -15.57131 -14.96271 -14.63965 -14.43824 -14.24444 -13.81685 -13.62187 -13.19979 -13.13104 -12.84823 -12.55738 -12.42241 -12.24710 -11.98921 -11.79269 -11.52570 -11.18718 -11.02308 -10.90228 -10.69781 -10.60539 -10.45164 -10.41618 -10.28510 -9.90582 -9.50369 -9.30021 -9.11582 -8.31876 -7.72629 -5.96640 -3.99117 3.15285 3.35505 3.39648 3.42168 3.73355 4.26802 4.44414 4.49851 4.55365 4.60331 4.76336 4.85505 4.94458 5.08532 5.17896 5.24694 5.30767 5.39092 5.41781 5.45751 5.50334 5.59670 5.67050 5.82374 5.86421 5.91171 6.02856 6.08450 6.17811 6.26456 6.40178 6.48980 6.54246 6.62339 6.92236 7.03322 7.54532 7.77539 7.87821 8.02521 8.13327 8.47621 9.08130 9.64392 11.14812 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.049968 B = 0.002859 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.228865 B = 9790.928672 C = 9917.859947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.026 3.974 10 C 0.066 3.934 11 N -0.690 5.690 12 C 0.064 3.936 13 C -0.085 4.085 14 C -0.108 4.108 15 C -0.132 4.132 16 C 0.258 3.742 17 C -0.119 4.119 18 C -0.101 4.101 19 O -0.362 6.362 20 C 0.013 3.987 21 C 0.020 3.980 22 O -0.381 6.381 23 H 0.261 0.739 24 H 0.025 0.975 25 H 0.013 0.987 26 H 0.013 0.987 27 H 0.057 0.943 28 H 0.334 0.666 29 H 0.021 0.979 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.107 0.893 42 H 0.096 0.904 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.067 -25.611 -2.698 25.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.071 0.929 9 C -0.012 4.012 10 C -0.062 4.062 11 N -0.321 5.321 12 C -0.066 4.066 13 C -0.104 4.104 14 C -0.146 4.146 15 C -0.170 4.170 16 C 0.181 3.819 17 C -0.157 4.157 18 C -0.138 4.138 19 O -0.282 6.282 20 C -0.064 4.064 21 C -0.056 4.056 22 O -0.303 6.303 23 H 0.070 0.930 24 H 0.043 0.957 25 H 0.031 0.969 26 H 0.032 0.968 27 H 0.075 0.925 28 H 0.151 0.849 29 H 0.039 0.961 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.125 0.875 42 H 0.114 0.886 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.766 -25.344 -3.340 25.712 hybrid contribution 0.894 0.732 0.881 1.454 sum 3.661 -24.612 -2.458 25.003 Atomic orbital electron populations 1.69962 1.06023 1.26667 1.50650 1.25002 0.94843 0.99185 0.95337 0.86651 0.79565 0.83146 0.78578 1.20230 1.21275 1.20313 1.21158 0.92946 0.91100 1.50885 0.92853 1.19058 0.94021 0.90427 0.97658 1.22143 0.96939 0.88622 0.98508 1.60568 1.19823 1.02092 1.49570 1.21944 0.94470 0.90211 0.99942 1.21191 0.96981 0.93689 0.98542 1.21483 0.97958 0.92888 1.02282 1.22062 0.99349 0.98825 0.96792 1.23435 0.85221 0.85946 0.87263 1.21879 0.97339 0.93373 1.03123 1.21418 0.99197 0.95882 0.97323 1.89312 1.64931 1.23389 1.50608 1.24350 0.97009 0.82063 1.02951 1.24163 0.94559 0.96738 0.90163 1.88888 1.62168 1.30490 1.48726 0.92953 0.95661 0.96876 0.96837 0.92464 0.84861 0.96087 0.91448 0.91410 0.91093 0.91721 0.91681 0.90366 0.90248 0.91136 0.89697 0.91468 0.90909 0.87529 0.88556 0.90685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.31 13.29 55.43 0.74 -26.58 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.69 5.23 -27.88 -0.15 0.54 16 10 C 0.07 1.43 5.62 -3.82 -0.02 1.41 16 11 N -0.69 -12.45 5.95 -113.78 -0.68 -13.13 16 12 C 0.06 0.95 5.07 -3.83 -0.02 0.93 16 13 C -0.09 -1.06 2.33 -90.62 -0.21 -1.27 16 14 C -0.11 -1.18 5.06 -26.72 -0.14 -1.31 16 15 C -0.13 -1.37 5.29 -26.74 -0.14 -1.51 16 16 C 0.26 2.89 1.03 -26.77 -0.03 2.86 16 17 C -0.12 -1.41 5.34 -26.74 -0.14 -1.55 16 18 C -0.10 -1.31 4.95 -26.73 -0.13 -1.44 16 19 O -0.36 -4.11 9.67 -59.04 -0.57 -4.68 16 20 C 0.01 0.10 7.91 38.17 0.30 0.40 16 21 C 0.02 0.15 8.07 38.17 0.31 0.46 16 22 O -0.38 -4.24 10.87 -59.04 -0.64 -4.89 16 23 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 24 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.33 5.83 8.73 -39.29 -0.34 5.49 16 29 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.82 7.69 -51.93 -0.40 0.42 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.08 1.23 7.75 -51.93 -0.40 0.83 16 39 H 0.07 0.94 7.69 -51.93 -0.40 0.54 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 LS Contribution 339.29 15.07 5.11 5.11 Total: -1.00 -31.52 339.29 -9.69 -41.21 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -7.85 Total: 0.32 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -0.78 Total: -14.31 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.06 Total: -39.70 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -1.21 Total: -9.56 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.52 -9.69 -41.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795959244.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.826 kcal (2) G-P(sol) polarization free energy of solvation -31.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds