Wall clock time and date at job start Mon Mar 30 2020 01:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00022 * 2 1 4 4 H 1.48506 * 109.47238 * 240.00367 * 3 2 1 5 5 H 1.48500 * 109.46997 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47310 * 120.00037 * 3 2 1 7 7 C 1.37877 * 120.00369 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00142 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99924 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47283 * 180.02562 * 9 7 2 11 11 N 1.46907 * 109.47147 * 180.02562 * 10 9 7 12 12 C 1.46896 * 110.99997 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47059 * 179.97438 * 12 11 10 14 14 C 1.53006 * 109.46139 * 185.00071 * 13 12 11 15 15 C 1.53023 * 109.45886 * 179.83705 * 14 13 12 16 16 C 1.52966 * 109.42588 * 59.79693 * 15 14 13 17 17 C 1.52958 * 109.82149 * 300.29333 * 16 15 14 18 18 C 1.52989 * 109.46497 * 64.95756 * 13 12 11 19 19 O 1.43705 * 109.40502 * 60.40488 * 16 15 14 20 20 C 1.44788 * 104.79514 * 95.49270 * 19 16 15 21 21 C 1.54915 * 101.72585 * 36.06411 * 20 19 16 22 22 O 1.43302 * 109.64812 * 179.72133 * 16 15 14 23 23 H 0.96995 * 119.99819 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.46819 * 60.00422 * 9 7 2 25 25 H 1.09001 * 109.47327 * 300.00656 * 9 7 2 26 26 H 1.09005 * 109.47103 * 60.00284 * 10 9 7 27 27 H 1.08996 * 109.47285 * 299.99922 * 10 9 7 28 28 H 1.00897 * 110.99823 * 303.95302 * 11 10 9 29 29 H 1.09005 * 109.46849 * 60.00005 * 12 11 10 30 30 H 1.09001 * 109.47115 * 300.00368 * 12 11 10 31 31 H 1.09003 * 109.45841 * 304.97821 * 13 12 11 32 32 H 1.08992 * 109.47533 * 299.83703 * 14 13 12 33 33 H 1.08996 * 109.47129 * 59.84506 * 14 13 12 34 34 H 1.09000 * 109.47736 * 179.78362 * 15 14 13 35 35 H 1.08997 * 109.47868 * 299.81519 * 15 14 13 36 36 H 1.08999 * 109.47850 * 299.70494 * 17 16 15 37 37 H 1.08997 * 109.47567 * 179.67590 * 17 16 15 38 38 H 1.08999 * 109.46816 * 300.15684 * 18 13 12 39 39 H 1.09003 * 109.47242 * 60.15094 * 18 13 12 40 40 H 1.08998 * 110.97647 * 277.95853 * 20 19 16 41 41 H 1.09000 * 111.01004 * 154.18985 * 20 19 16 42 42 H 1.09001 * 110.69841 * 206.07713 * 21 20 19 43 43 H 1.09010 * 110.69055 * 82.87461 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5109 -4.9343 -0.0012 12 6 2.4354 -6.0758 -0.0018 13 6 1.6353 -7.3800 -0.0018 14 6 2.5938 -8.5660 0.1233 15 6 1.7933 -9.8702 0.1274 16 6 1.0003 -9.9844 -1.1756 17 6 0.0446 -8.7974 -1.3069 18 6 0.8478 -7.4950 -1.3083 19 8 1.9092 -9.9914 -2.2887 20 6 2.1188 -11.3929 -2.5860 21 6 0.7177 -11.9885 -2.2996 22 8 0.2536 -11.2075 -1.1796 23 1 -0.4849 0.8400 -0.0004 24 1 0.6242 -2.5567 -0.8904 25 1 0.6247 -2.5571 0.8896 26 1 2.8721 -3.6043 0.8895 27 1 2.8721 -3.6043 -0.8905 28 1 0.8743 -4.9846 0.7800 29 1 3.0634 -6.0352 0.8882 30 1 3.0634 -6.0343 -0.8918 31 1 0.9436 -7.3816 0.8406 32 1 3.2841 -8.5660 -0.7202 33 1 3.1563 -8.4821 1.0531 34 1 2.4761 -10.7155 0.2127 35 1 1.1054 -9.8717 0.9729 36 1 -0.6499 -8.7952 -0.4668 37 1 -0.5132 -8.8814 -2.2395 38 1 0.1671 -6.6484 -1.3979 39 1 1.5396 -7.4956 -2.1507 40 1 2.8691 -11.8243 -1.9234 41 1 2.3966 -11.5334 -3.6306 42 1 0.7947 -13.0417 -2.0294 43 1 0.0604 -11.8573 -3.1593 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795959244.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:28 Heat of formation + Delta-G solvation = -136.452138 kcal Electronic energy + Delta-G solvation = -20993.695633 eV Core-core repulsion = 17843.763466 eV Total energy + Delta-G solvation = -3149.932167 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.82024 -38.95549 -36.86574 -35.93771 -34.95151 -32.58172 -31.86810 -30.68485 -29.07193 -26.48294 -24.63955 -24.23774 -23.56947 -22.46646 -21.90208 -20.57569 -18.49865 -18.07423 -17.76644 -16.80897 -16.49388 -16.44032 -16.07573 -15.56945 -15.52034 -14.88296 -14.66808 -14.46588 -14.23289 -13.99598 -13.79662 -13.59481 -13.45781 -13.18139 -13.03354 -12.83001 -12.65436 -12.51384 -12.31225 -12.12484 -11.94507 -11.70257 -11.56211 -11.38343 -11.31478 -11.12287 -11.01909 -10.55730 -10.34009 -9.22261 -8.20009 -6.31766 1.40180 1.43768 1.51693 2.40808 2.47291 2.98184 3.13141 3.34520 3.67070 3.72184 3.75685 3.87191 4.06468 4.17042 4.24722 4.31532 4.44471 4.49749 4.51865 4.54157 4.59373 4.59665 4.71105 4.73323 4.82838 4.87227 5.01249 5.01479 5.04530 5.07135 5.08190 5.21892 5.29564 5.43498 5.49409 5.57227 5.68588 5.79539 6.15449 6.18748 6.30444 6.58573 6.85594 7.37443 8.92025 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.049968 B = 0.002859 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.228865 B = 9790.928672 C = 9917.859947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.033 3.967 10 C 0.084 3.916 11 N -0.695 5.695 12 C 0.067 3.933 13 C -0.078 4.078 14 C -0.101 4.101 15 C -0.129 4.129 16 C 0.257 3.743 17 C -0.119 4.119 18 C -0.094 4.094 19 O -0.385 6.385 20 C 0.008 3.992 21 C 0.015 3.985 22 O -0.399 6.399 23 H 0.264 0.736 24 H -0.007 1.007 25 H -0.009 1.009 26 H 0.018 0.982 27 H 0.054 0.946 28 H 0.338 0.662 29 H 0.031 0.969 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.085 0.915 41 H 0.126 0.874 42 H 0.122 0.878 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.534 -26.660 -2.403 27.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.792 3.208 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.045 4.045 11 N -0.326 5.326 12 C -0.062 4.062 13 C -0.097 4.097 14 C -0.139 4.139 15 C -0.167 4.167 16 C 0.181 3.819 17 C -0.157 4.157 18 C -0.132 4.132 19 O -0.306 6.306 20 C -0.067 4.067 21 C -0.061 4.061 22 O -0.321 6.321 23 H 0.073 0.927 24 H 0.012 0.988 25 H 0.010 0.990 26 H 0.036 0.964 27 H 0.073 0.927 28 H 0.156 0.844 29 H 0.049 0.951 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.104 0.896 41 H 0.144 0.856 42 H 0.140 0.860 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.244 -26.424 -3.048 26.936 hybrid contribution 0.394 0.977 0.738 1.287 sum 4.638 -25.447 -2.310 25.969 Atomic orbital electron populations 1.70101 1.07842 1.27894 1.51346 1.25992 0.95788 1.03417 0.94590 0.85467 0.78246 0.77910 0.79210 1.19185 1.20735 1.19059 1.21605 0.93538 0.92344 1.51064 0.92189 1.18908 0.94287 0.92279 0.95002 1.21760 0.95561 0.88603 0.98537 1.60469 1.20365 1.01720 1.50012 1.21991 0.94230 0.89850 1.00124 1.21130 0.97104 0.93199 0.98251 1.21408 0.97462 0.92279 1.02716 1.22033 0.99444 0.98792 0.96397 1.23362 0.85120 0.85677 0.87764 1.21840 0.97505 0.93320 1.02989 1.21289 0.98675 0.95893 0.97297 1.89288 1.64901 1.25685 1.50703 1.24608 0.97302 0.80310 1.04521 1.24410 0.94543 0.97654 0.89513 1.88862 1.62652 1.30612 1.49986 0.92709 0.98830 0.99018 0.96389 0.92704 0.84434 0.95070 0.91906 0.90953 0.91644 0.90377 0.90379 0.90078 0.90009 0.91647 0.91829 0.92644 0.89643 0.85611 0.86045 0.90365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.87 13.29 21.45 0.28 -57.59 16 2 C 0.00 0.01 5.46 84.65 0.46 0.47 16 3 Si 0.97 44.89 29.54 68.60 2.03 46.91 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.55 -31.96 9.11 25.60 0.23 -31.72 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.79 5.23 29.85 0.16 1.95 16 10 C 0.08 3.67 5.62 86.30 0.49 4.15 16 11 N -0.69 -25.19 5.95 -513.88 -3.06 -28.25 16 12 C 0.07 1.93 5.07 86.30 0.44 2.37 16 13 C -0.08 -1.88 2.33 -10.80 -0.03 -1.90 16 14 C -0.10 -2.01 5.06 30.60 0.15 -1.85 16 15 C -0.13 -2.41 5.29 30.59 0.16 -2.25 16 16 C 0.26 5.46 1.03 30.57 0.03 5.49 16 17 C -0.12 -2.78 5.34 30.59 0.16 -2.61 16 18 C -0.09 -2.46 4.95 30.60 0.15 -2.31 16 19 O -0.38 -8.25 9.67 -126.22 -1.22 -9.47 16 20 C 0.01 0.11 7.91 72.64 0.57 0.68 16 21 C 0.01 0.19 8.07 72.64 0.59 0.78 16 22 O -0.40 -8.29 10.87 -126.22 -1.37 -9.66 16 23 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 24 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 25 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 26 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.34 11.87 8.73 -89.70 -0.78 11.08 16 29 H 0.03 0.85 8.14 -2.38 -0.02 0.84 16 30 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.06 1.40 7.69 -2.39 -0.02 1.38 16 33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.06 1.91 7.75 -2.39 -0.02 1.89 16 39 H 0.05 1.57 7.69 -2.39 -0.02 1.55 16 40 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -67.87 339.29 0.41 -67.46 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.18 Total: 17.35 kcal Atomic # 6 Polarization: -30.32 SS G_CDS: 3.57 Total: -26.75 kcal Atomic # 7 Polarization: -83.07 SS G_CDS: -2.77 Total: -85.84 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -2.59 Total: -19.13 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -67.87 0.41 -67.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795959244.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.994 kcal (2) G-P(sol) polarization free energy of solvation -67.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds