Wall clock time and date at job start Mon Mar 30 2020 01:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46499 * 119.99767 * 2 1 4 4 C 1.50705 * 109.47176 * 270.00000 * 3 2 1 5 5 H 1.07994 * 119.99679 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99813 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00364 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99854 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46823 * 60.00202 * 8 6 4 10 10 H 1.48500 * 109.47098 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46998 * 300.00363 * 8 6 4 12 12 C 1.34780 * 120.00274 * 180.02562 * 2 1 3 13 13 O 1.21606 * 120.00079 * 182.89417 * 12 2 1 14 14 C 1.47298 * 119.99742 * 2.89448 * 12 2 1 15 15 F 1.35091 * 120.00180 * 353.50444 * 14 12 2 16 16 C 1.33112 * 119.99359 * 173.50251 * 14 12 2 17 17 C 1.50708 * 119.99646 * 180.02562 * 16 14 12 18 18 C 1.53005 * 109.46995 * 240.00329 * 17 16 14 19 19 C 1.52997 * 109.47049 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.47050 * 59.99977 * 19 18 17 21 21 C 1.52996 * 109.47054 * 299.99871 * 20 19 18 22 22 C 1.52993 * 109.47125 * 120.00460 * 17 16 14 23 23 H 1.09003 * 109.46860 * 263.85754 * 1 2 3 24 24 H 1.08990 * 109.47215 * 23.85725 * 1 2 3 25 25 H 1.08998 * 109.47064 * 143.86111 * 1 2 3 26 26 H 1.09002 * 109.47120 * 30.00319 * 3 2 1 27 27 H 1.09007 * 109.47283 * 150.00117 * 3 2 1 28 28 H 0.97000 * 120.00375 * 179.97438 * 7 6 4 29 29 H 1.08000 * 120.00921 * 359.97438 * 16 14 12 30 30 H 1.08998 * 109.47116 * 359.97438 * 17 16 14 31 31 H 1.09001 * 109.46959 * 300.00270 * 18 17 16 32 32 H 1.09002 * 109.47152 * 59.99467 * 18 17 16 33 33 H 1.08998 * 109.47176 * 299.99971 * 19 18 17 34 34 H 1.09004 * 109.47004 * 179.97438 * 19 18 17 35 35 H 1.08995 * 109.46958 * 179.97438 * 20 19 18 36 36 H 1.08998 * 109.47136 * 59.99970 * 20 19 18 37 37 H 1.08998 * 109.47230 * 300.00041 * 21 20 19 38 38 H 1.08997 * 109.47169 * 179.97438 * 21 20 19 39 39 H 1.09004 * 109.46718 * 299.99544 * 22 17 16 40 40 H 1.08998 * 109.47812 * 59.99583 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0974 1.0962 -2.2417 6 6 3.1259 2.8781 -1.6727 7 7 3.5532 3.6182 -0.6732 8 14 3.4366 3.4177 -3.4339 9 1 2.1387 3.5949 -4.1336 10 1 4.1781 4.7044 -3.4339 11 1 4.2393 2.3832 -4.1343 12 6 2.1390 -1.1672 -0.0005 13 8 3.3538 -1.1679 0.0527 14 6 1.4039 -2.4420 -0.0655 15 9 0.0550 -2.4484 0.0078 16 6 2.0689 -3.5876 -0.1965 17 6 1.3168 -4.8919 -0.2636 18 6 1.7537 -5.7926 0.8936 19 6 0.9897 -7.1165 0.8258 20 6 1.2909 -7.8117 -0.5034 21 6 0.8541 -6.9111 -1.6605 22 6 1.6186 -5.5869 -1.5927 23 1 -0.3633 -0.1100 1.0218 24 1 -0.3633 0.9398 -0.4156 25 1 -0.3633 -0.8299 -0.6060 26 1 1.6083 2.0284 0.5139 27 1 3.1499 1.1385 0.5138 28 1 4.0300 4.4441 -0.8504 29 1 3.1472 -3.5825 -0.2555 30 1 0.2467 -4.6986 -0.1889 31 1 2.8238 -5.9860 0.8194 32 1 1.5388 -5.2975 1.8405 33 1 -0.0803 -6.9227 0.9002 34 1 1.3013 -7.7583 1.6500 35 1 0.7471 -8.7550 -0.5515 36 1 2.3610 -8.0055 -0.5778 37 1 -0.2160 -6.7173 -1.5861 38 1 1.0691 -7.4061 -2.6074 39 1 1.3073 -4.9452 -2.4171 40 1 2.6887 -5.7803 -1.6670 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798283075.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:08 Heat of formation + Delta-G solvation = -84.858036 kcal Electronic energy + Delta-G solvation = -20772.435078 eV Core-core repulsion = 17501.279894 eV Total energy + Delta-G solvation = -3271.155184 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.88795 -39.02915 -38.63038 -35.03814 -33.38442 -32.60128 -30.91098 -29.63039 -27.88552 -25.93096 -24.19084 -22.71747 -22.50265 -20.46484 -19.83974 -19.05931 -16.74509 -16.59720 -16.31505 -15.64681 -15.46324 -15.05788 -14.49215 -14.33602 -14.32852 -13.99502 -13.62301 -13.00991 -12.87946 -12.78146 -12.42169 -12.35364 -12.21411 -12.07324 -11.42952 -11.30749 -11.19373 -11.13798 -10.86728 -10.61994 -10.56459 -10.38848 -10.37327 -10.19008 -9.67731 -9.14062 -8.89507 -8.45467 -7.69786 -6.06536 -4.12018 1.47815 3.31533 3.35503 3.38169 3.63302 3.76355 4.40669 4.49443 4.54514 4.59723 4.61657 4.95686 5.05108 5.10244 5.25046 5.27867 5.33328 5.35809 5.42540 5.48394 5.64571 5.80452 5.82615 5.84500 5.97261 5.97759 6.00358 6.01192 6.15748 6.16689 6.33576 6.36332 6.53356 7.05070 7.37254 7.46175 7.88895 8.18902 8.28287 8.76602 8.94978 9.52889 11.01566 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.031386 B = 0.003942 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.903231 B = 7100.779184 C = 7387.700906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.588 5.588 3 C 0.243 3.757 4 C -0.530 4.530 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 C 0.533 3.467 13 O -0.527 6.527 14 C 0.012 3.988 15 F -0.137 7.137 16 C -0.124 4.124 17 C -0.061 4.061 18 C -0.110 4.110 19 C -0.119 4.119 20 C -0.121 4.121 21 C -0.119 4.119 22 C -0.111 4.111 23 H 0.046 0.954 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.036 0.964 27 H 0.047 0.953 28 H 0.265 0.735 29 H 0.149 0.851 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.616 -19.806 1.433 21.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.318 5.318 3 C 0.124 3.876 4 C -0.569 4.569 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.318 3.682 13 O -0.406 6.406 14 C -0.010 4.010 15 F -0.116 7.116 16 C -0.145 4.145 17 C -0.080 4.080 18 C -0.148 4.148 19 C -0.156 4.156 20 C -0.158 4.158 21 C -0.156 4.156 22 C -0.148 4.148 23 H 0.065 0.935 24 H 0.092 0.908 25 H 0.099 0.901 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.166 0.834 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.944 -19.548 1.518 20.800 hybrid contribution -0.136 0.544 -0.952 1.105 sum -7.080 -19.004 0.566 20.288 Atomic orbital electron populations 1.22217 0.80684 1.04056 1.01140 1.48149 1.06802 1.07577 1.69231 1.19404 0.92688 0.77720 0.97767 1.21384 1.36893 1.06513 0.92102 0.92408 1.24937 0.95233 0.96268 0.97588 1.69921 1.38162 1.14346 1.30860 0.86526 0.78408 0.77841 0.84473 1.20186 1.21101 1.20112 1.18146 0.87438 0.83338 0.79269 1.90797 1.12436 1.86372 1.50984 1.20174 0.76760 0.95916 1.08187 1.91323 1.29639 1.96725 1.93892 1.23797 1.01828 0.92080 0.96824 1.20274 0.99990 0.91748 0.95981 1.21531 1.00525 0.94991 0.97705 1.21533 1.00452 0.96304 0.97326 1.21553 1.01367 0.98106 0.94778 1.21540 1.00188 0.95629 0.98263 1.21545 1.00883 0.96053 0.96346 0.93544 0.90838 0.90101 0.94623 0.93541 0.92568 0.83356 0.90033 0.91451 0.91692 0.91962 0.91947 0.92230 0.91936 0.91954 0.91928 0.91621 0.91439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.11 9.50 59.85 0.57 1.68 16 2 N -0.59 -13.23 2.86 -184.28 -0.53 -13.76 16 3 C 0.24 6.51 5.15 -5.19 -0.03 6.49 16 4 C -0.53 -15.27 9.39 -34.44 -0.32 -15.59 16 5 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 6 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 7 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 8 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 C 0.53 11.70 7.62 -12.58 -0.10 11.60 16 13 O -0.53 -13.36 15.81 5.27 0.08 -13.28 16 14 C 0.01 0.20 7.11 -37.68 -0.27 -0.07 16 15 F -0.14 -2.12 12.26 2.25 0.03 -2.09 16 16 C -0.12 -1.79 8.35 -36.09 -0.30 -2.09 16 17 C -0.06 -0.69 2.45 -91.77 -0.23 -0.91 16 18 C -0.11 -1.07 5.19 -26.73 -0.14 -1.21 16 19 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 20 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 21 C -0.12 -0.98 5.92 -26.71 -0.16 -1.14 16 22 C -0.11 -1.11 5.19 -26.71 -0.14 -1.25 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.07 1.30 8.02 -51.93 -0.42 0.88 16 25 H 0.08 1.30 5.38 -51.93 -0.28 1.03 16 26 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 27 H 0.05 1.38 7.38 -51.93 -0.38 1.00 16 28 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.15 2.22 7.51 -52.49 -0.39 1.82 16 30 H 0.08 0.94 7.02 -51.93 -0.36 0.58 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 327.33 15.07 4.93 4.93 Total: -1.00 -31.62 327.33 -7.74 -39.36 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -6.45 Total: -3.14 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -1.52 Total: -2.99 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.21 Total: -39.73 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.08 Total: -13.28 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.03 Total: -2.09 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.62 -7.74 -39.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798283075.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.493 kcal (2) G-P(sol) polarization free energy of solvation -31.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds