Wall clock time and date at job start Mon Mar 30 2020 01:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46499 * 119.99767 * 2 1 4 4 C 1.50705 * 109.47176 * 270.00000 * 3 2 1 5 5 H 1.07994 * 119.99679 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99813 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00364 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99854 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46823 * 60.00202 * 8 6 4 10 10 H 1.48500 * 109.47098 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46998 * 300.00363 * 8 6 4 12 12 C 1.34780 * 120.00274 * 180.02562 * 2 1 3 13 13 O 1.21606 * 120.00079 * 182.89417 * 12 2 1 14 14 C 1.47298 * 119.99742 * 2.89448 * 12 2 1 15 15 F 1.35091 * 120.00180 * 353.50444 * 14 12 2 16 16 C 1.33112 * 119.99359 * 173.50251 * 14 12 2 17 17 C 1.50708 * 119.99646 * 180.02562 * 16 14 12 18 18 C 1.53005 * 109.46995 * 240.00329 * 17 16 14 19 19 C 1.52997 * 109.47049 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.47050 * 59.99977 * 19 18 17 21 21 C 1.52996 * 109.47054 * 299.99871 * 20 19 18 22 22 C 1.52993 * 109.47125 * 120.00460 * 17 16 14 23 23 H 1.09003 * 109.46860 * 263.85754 * 1 2 3 24 24 H 1.08990 * 109.47215 * 23.85725 * 1 2 3 25 25 H 1.08998 * 109.47064 * 143.86111 * 1 2 3 26 26 H 1.09002 * 109.47120 * 30.00319 * 3 2 1 27 27 H 1.09007 * 109.47283 * 150.00117 * 3 2 1 28 28 H 0.97000 * 120.00375 * 179.97438 * 7 6 4 29 29 H 1.08000 * 120.00921 * 359.97438 * 16 14 12 30 30 H 1.08998 * 109.47116 * 359.97438 * 17 16 14 31 31 H 1.09001 * 109.46959 * 300.00270 * 18 17 16 32 32 H 1.09002 * 109.47152 * 59.99467 * 18 17 16 33 33 H 1.08998 * 109.47176 * 299.99971 * 19 18 17 34 34 H 1.09004 * 109.47004 * 179.97438 * 19 18 17 35 35 H 1.08995 * 109.46958 * 179.97438 * 20 19 18 36 36 H 1.08998 * 109.47136 * 59.99970 * 20 19 18 37 37 H 1.08998 * 109.47230 * 300.00041 * 21 20 19 38 38 H 1.08997 * 109.47169 * 179.97438 * 21 20 19 39 39 H 1.09004 * 109.46718 * 299.99544 * 22 17 16 40 40 H 1.08998 * 109.47812 * 59.99583 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0974 1.0962 -2.2417 6 6 3.1259 2.8781 -1.6727 7 7 3.5532 3.6182 -0.6732 8 14 3.4366 3.4177 -3.4339 9 1 2.1387 3.5949 -4.1336 10 1 4.1781 4.7044 -3.4339 11 1 4.2393 2.3832 -4.1343 12 6 2.1390 -1.1672 -0.0005 13 8 3.3538 -1.1679 0.0527 14 6 1.4039 -2.4420 -0.0655 15 9 0.0550 -2.4484 0.0078 16 6 2.0689 -3.5876 -0.1965 17 6 1.3168 -4.8919 -0.2636 18 6 1.7537 -5.7926 0.8936 19 6 0.9897 -7.1165 0.8258 20 6 1.2909 -7.8117 -0.5034 21 6 0.8541 -6.9111 -1.6605 22 6 1.6186 -5.5869 -1.5927 23 1 -0.3633 -0.1100 1.0218 24 1 -0.3633 0.9398 -0.4156 25 1 -0.3633 -0.8299 -0.6060 26 1 1.6083 2.0284 0.5139 27 1 3.1499 1.1385 0.5138 28 1 4.0300 4.4441 -0.8504 29 1 3.1472 -3.5825 -0.2555 30 1 0.2467 -4.6986 -0.1889 31 1 2.8238 -5.9860 0.8194 32 1 1.5388 -5.2975 1.8405 33 1 -0.0803 -6.9227 0.9002 34 1 1.3013 -7.7583 1.6500 35 1 0.7471 -8.7550 -0.5515 36 1 2.3610 -8.0055 -0.5778 37 1 -0.2160 -6.7173 -1.5861 38 1 1.0691 -7.4061 -2.6074 39 1 1.3073 -4.9452 -2.4171 40 1 2.6887 -5.7803 -1.6670 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798283075.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:07 Heat of formation + Delta-G solvation = -102.546792 kcal Electronic energy + Delta-G solvation = -20773.202120 eV Core-core repulsion = 17501.279894 eV Total energy + Delta-G solvation = -3271.922226 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.15770 -40.67284 -39.55430 -36.84715 -34.75364 -34.48550 -31.61768 -30.87250 -29.75013 -27.51978 -25.91440 -23.90069 -23.42526 -21.69210 -20.83774 -20.36341 -18.76208 -18.29593 -17.79537 -17.10476 -16.80040 -16.32391 -16.17107 -15.62789 -15.26909 -15.03987 -14.99006 -14.41691 -14.25608 -14.02419 -13.87845 -13.53455 -13.44772 -13.15179 -13.05788 -13.04128 -12.67288 -12.44356 -12.23835 -12.00111 -11.95720 -11.77254 -11.36104 -11.18915 -11.14307 -10.81130 -10.67506 -10.18164 -9.52217 -8.26277 -6.42222 0.11135 1.36355 1.40534 1.48282 1.97370 2.12803 2.37843 3.02423 3.08865 3.50283 3.76225 3.88850 3.93978 4.21288 4.28002 4.35373 4.39042 4.56445 4.60605 4.61724 4.65002 4.69783 4.77433 4.85545 4.91679 5.03011 5.12810 5.17304 5.26503 5.27824 5.30295 5.33284 5.41644 5.44380 5.49539 5.60606 5.73861 5.98619 6.51839 6.65346 7.06335 7.29651 8.81180 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.031386 B = 0.003942 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.903231 B = 7100.779184 C = 7387.700906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.598 5.598 3 C 0.257 3.743 4 C -0.550 4.550 5 H 0.054 0.946 6 C 0.010 3.990 7 N -0.927 5.927 8 Si 0.971 3.029 9 H -0.261 1.261 10 H -0.276 1.276 11 H -0.275 1.275 12 C 0.525 3.475 13 O -0.575 6.575 14 C -0.009 4.009 15 F -0.126 7.126 16 C -0.084 4.084 17 C -0.059 4.059 18 C -0.110 4.110 19 C -0.116 4.116 20 C -0.120 4.120 21 C -0.116 4.116 22 C -0.111 4.111 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.101 0.899 26 H 0.028 0.972 27 H 0.005 0.995 28 H 0.269 0.731 29 H 0.143 0.857 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.766 -21.763 0.317 23.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.327 5.327 3 C 0.136 3.864 4 C -0.589 4.589 5 H 0.072 0.928 6 C -0.190 4.190 7 N -0.566 5.566 8 Si 0.795 3.205 9 H -0.185 1.185 10 H -0.201 1.201 11 H -0.201 1.201 12 C 0.313 3.687 13 O -0.457 6.457 14 C -0.031 4.031 15 F -0.105 7.105 16 C -0.105 4.105 17 C -0.077 4.077 18 C -0.147 4.147 19 C -0.153 4.153 20 C -0.157 4.157 21 C -0.153 4.153 22 C -0.149 4.149 23 H 0.087 0.913 24 H 0.089 0.911 25 H 0.119 0.881 26 H 0.046 0.954 27 H 0.023 0.977 28 H 0.078 0.922 29 H 0.160 0.840 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.147 -21.524 0.410 23.018 hybrid contribution 0.241 1.079 -0.550 1.235 sum -7.906 -20.445 -0.140 21.921 Atomic orbital electron populations 1.22446 0.77733 1.04809 1.03042 1.48175 1.08642 1.06503 1.69426 1.18911 0.91284 0.79620 0.96575 1.21640 1.37549 1.06995 0.92694 0.92807 1.25884 0.94607 0.96156 1.02321 1.70040 1.38532 1.14779 1.33236 0.85417 0.78890 0.77487 0.78734 1.18517 1.20067 1.20073 1.18854 0.87299 0.84640 0.77907 1.90754 1.14555 1.87332 1.53104 1.19399 0.77312 0.93935 1.12464 1.91332 1.28373 1.96485 1.94286 1.24143 1.01740 0.92825 0.91799 1.20394 0.99548 0.90201 0.97606 1.21544 1.01017 0.95600 0.96569 1.21522 1.00287 0.95338 0.98154 1.21563 1.01696 0.98438 0.94017 1.21528 0.99983 0.94615 0.99186 1.21559 1.01410 0.96890 0.95000 0.91266 0.91053 0.88101 0.95408 0.97675 0.92173 0.83973 0.89816 0.91215 0.92122 0.91723 0.90791 0.90854 0.91791 0.91723 0.90924 0.92368 0.91234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.15 9.50 127.77 1.21 3.36 16 2 N -0.60 -27.62 2.86 -855.20 -2.44 -30.06 16 3 C 0.26 14.38 5.15 85.63 0.44 14.82 16 4 C -0.55 -32.47 9.39 25.60 0.24 -32.23 16 5 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 6 C 0.01 0.57 5.46 84.65 0.46 1.03 16 7 N -0.93 -56.45 13.29 21.45 0.28 -56.17 16 8 Si 0.97 45.10 29.54 68.60 2.03 47.12 16 9 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 C 0.52 23.67 7.62 86.63 0.66 24.33 16 13 O -0.58 -30.48 15.81 -4.05 -0.06 -30.55 16 14 C -0.01 -0.30 7.11 23.50 0.17 -0.13 16 15 F -0.13 -3.69 12.26 44.97 0.55 -3.14 16 16 C -0.08 -2.34 8.35 24.54 0.20 -2.14 16 17 C -0.06 -1.20 2.45 -11.54 -0.03 -1.23 16 18 C -0.11 -1.89 5.19 30.59 0.16 -1.73 16 19 C -0.12 -1.53 5.92 30.59 0.18 -1.35 16 20 C -0.12 -1.45 5.92 30.59 0.18 -1.27 16 21 C -0.12 -1.59 5.92 30.61 0.18 -1.40 16 22 C -0.11 -1.98 5.19 30.61 0.16 -1.82 16 23 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.07 2.50 8.02 -2.39 -0.02 2.48 16 25 H 0.10 3.12 5.38 -2.39 -0.01 3.11 16 26 H 0.03 1.57 8.07 -2.39 -0.02 1.55 16 27 H 0.01 0.33 7.38 -2.38 -0.02 0.31 16 28 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 29 H 0.14 4.21 7.51 -2.91 -0.02 4.19 16 30 H 0.08 1.73 7.02 -2.39 -0.02 1.72 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.09 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 37 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -69.94 327.33 5.58 -64.36 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: 1.01 Total: 8.21 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: 4.22 Total: 0.23 kcal Atomic # 7 Polarization: -84.07 SS G_CDS: -2.16 Total: -86.23 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -0.06 Total: -30.55 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.55 Total: -3.14 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -69.94 5.58 -64.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798283075.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.191 kcal (2) G-P(sol) polarization free energy of solvation -69.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds