Wall clock time and date at job start Mon Mar 30 2020 01:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47124 * 242.34887 * 3 2 1 5 5 C 1.36939 * 120.00146 * 263.91302 * 4 3 2 6 6 H 1.07999 * 120.00388 * 199.35976 * 5 4 3 7 7 C 1.38810 * 119.99801 * 19.37062 * 5 4 3 8 8 N 1.31625 * 120.00285 * 22.29765 * 7 5 4 9 9 Si 1.86798 * 120.00062 * 202.30214 * 7 5 4 10 10 H 1.48507 * 109.47294 * 89.99622 * 9 7 5 11 11 H 1.48497 * 109.47201 * 209.99819 * 9 7 5 12 12 H 1.48502 * 109.47176 * 329.99779 * 9 7 5 13 13 C 1.46504 * 119.99757 * 83.92104 * 4 3 2 14 14 C 1.50695 * 109.47158 * 90.00178 * 13 4 3 15 15 C 1.38235 * 120.00371 * 89.99934 * 14 13 4 16 16 C 1.38237 * 119.99808 * 179.97438 * 15 14 13 17 17 C 1.38228 * 120.00431 * 359.97155 * 16 15 14 18 18 C 1.50693 * 120.00183 * 179.97438 * 17 16 15 19 19 C 1.53788 * 113.61642 * 217.49950 * 18 17 16 20 20 C 1.53774 * 87.08395 * 220.02005 * 19 18 17 21 21 C 1.53779 * 87.08306 * 25.43342 * 20 19 18 22 22 C 1.38236 * 119.99870 * 0.03304 * 17 16 15 23 23 C 1.38238 * 120.00100 * 359.96597 * 22 17 16 24 24 H 4.40636 * 5.51521 * 179.97438 * 4 1 2 25 25 H 1.09001 * 109.47230 * 122.34876 * 3 2 1 26 26 H 1.09000 * 109.47785 * 2.35160 * 3 2 1 27 27 H 0.96997 * 119.99658 * 180.02562 * 8 7 5 28 28 H 1.08996 * 109.46918 * 329.99406 * 13 4 3 29 29 H 1.08999 * 109.46559 * 209.99587 * 13 4 3 30 30 H 1.07997 * 119.99654 * 359.97438 * 15 14 13 31 31 H 1.07996 * 119.99384 * 179.70179 * 16 15 14 32 32 H 1.08997 * 112.85339 * 348.80811 * 18 17 16 33 33 H 1.09000 * 113.60991 * 334.57139 * 19 18 17 34 34 H 1.08999 * 113.61041 * 105.46963 * 19 18 17 35 35 H 1.09001 * 113.61864 * 270.88400 * 20 19 18 36 36 H 1.08996 * 113.61566 * 139.98006 * 20 19 18 37 37 H 1.09000 * 113.61568 * 220.02264 * 21 20 19 38 38 H 1.08999 * 113.69291 * 89.12555 * 21 20 19 39 39 H 1.08001 * 120.00471 * 180.02562 * 22 17 16 40 40 H 1.08004 * 120.00014 * 180.02562 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.6419 1.2235 5 6 3.4802 1.9667 1.2109 6 1 4.1181 2.3656 1.9858 7 6 3.0111 2.7971 0.2023 8 7 1.9267 2.4702 -0.4683 9 14 3.9188 4.3785 -0.2033 10 1 4.9439 4.1081 -1.2433 11 1 2.9538 5.3872 -0.7099 12 1 4.5804 4.8975 1.0207 13 6 3.2518 -0.1344 2.4604 14 6 4.6244 -0.7517 2.5372 15 6 5.6589 -0.0637 3.1433 16 6 6.9178 -0.6303 3.2142 17 6 7.1421 -1.8851 2.6795 18 6 8.5146 -2.5025 2.7562 19 6 8.9001 -3.3051 1.5023 20 6 9.5320 -4.3360 2.4524 21 6 8.5487 -3.8350 3.5234 22 6 6.1077 -2.5731 2.0733 23 6 4.8487 -2.0066 2.0024 24 1 -1.0501 0.0001 -0.0002 25 1 3.0091 0.5507 -0.8682 26 1 3.0099 -1.0259 -0.0422 27 1 1.5992 3.0503 -1.1733 28 1 2.4982 -0.9217 2.4683 29 1 3.1004 0.5223 3.3171 30 1 5.4835 0.9165 3.5615 31 1 7.7270 -0.0908 3.6835 32 1 9.2797 -1.7951 3.0757 33 1 8.0430 -3.6890 0.9491 34 1 9.6240 -2.7978 0.8647 35 1 10.5762 -4.1304 2.6880 36 1 9.3605 -5.3696 2.1517 37 1 8.9890 -3.7553 4.5173 38 1 7.5952 -4.3630 3.5239 39 1 6.2827 -3.5537 1.6558 40 1 4.0404 -2.5443 1.5291 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799200445.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:20 Heat of formation + Delta-G solvation = 119.058346 kcal Electronic energy + Delta-G solvation = -19756.576329 eV Core-core repulsion = 16925.032848 eV Total energy + Delta-G solvation = -2831.543481 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.80206 -37.83979 -35.79795 -32.16926 -31.54019 -30.46256 -30.04045 -26.85115 -25.92289 -25.65050 -24.16771 -22.36395 -21.69503 -20.33304 -19.04455 -17.39191 -16.64598 -16.18489 -15.47582 -15.07273 -14.71603 -14.49752 -13.82186 -13.68995 -13.34402 -12.99702 -12.95923 -12.87325 -12.47100 -12.24126 -11.76693 -11.47298 -11.23744 -11.17163 -10.98006 -10.80552 -10.62800 -10.42741 -10.32499 -10.21991 -10.09688 -9.97380 -8.93979 -8.76299 -8.44265 -8.40676 -7.98343 -6.96479 -5.76962 -3.19699 1.82992 1.90712 3.38597 3.46354 3.46807 4.07221 4.31340 4.40079 4.56402 4.58630 4.66442 4.68238 5.01008 5.23018 5.32585 5.35118 5.42474 5.60119 5.60926 5.67166 5.71431 5.76464 5.79517 5.85623 5.88601 5.96064 6.02268 6.17890 6.22430 6.39371 6.52063 6.59911 6.65218 6.72788 6.95754 7.03178 7.21761 7.29980 7.43318 7.53022 7.77812 8.30159 9.11430 9.21344 9.78214 10.25170 11.26259 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021785 B = 0.004709 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.981823 B = 5944.086620 C = 6627.310587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 C -0.096 4.096 3 C 0.270 3.730 4 N -0.578 5.578 5 C -0.263 4.263 6 H 0.074 0.926 7 C 0.005 3.995 8 N -0.886 5.886 9 Si 0.898 3.102 10 H -0.288 1.288 11 H -0.293 1.293 12 H -0.280 1.280 13 C 0.179 3.821 14 C -0.078 4.078 15 C -0.100 4.100 16 C -0.120 4.120 17 C -0.090 4.090 18 C -0.068 4.068 19 C -0.135 4.135 20 C -0.144 4.144 21 C -0.131 4.131 22 C -0.120 4.120 23 C -0.113 4.113 24 H 0.190 0.810 25 H 0.091 0.909 26 H 0.036 0.964 27 H 0.254 0.746 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.117 0.883 31 H 0.111 0.889 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.112 0.888 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.788 -11.809 5.649 16.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.319 4.319 2 C -0.099 4.099 3 C 0.144 3.856 4 N -0.297 5.297 5 C -0.392 4.392 6 H 0.091 0.909 7 C -0.194 4.194 8 N -0.529 5.529 9 Si 0.727 3.273 10 H -0.215 1.215 11 H -0.219 1.219 12 H -0.205 1.205 13 C 0.052 3.948 14 C -0.081 4.081 15 C -0.119 4.119 16 C -0.138 4.138 17 C -0.090 4.090 18 C -0.086 4.086 19 C -0.172 4.172 20 C -0.182 4.182 21 C -0.169 4.169 22 C -0.138 4.138 23 C -0.132 4.132 24 H 0.207 0.793 25 H 0.109 0.891 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.136 0.864 31 H 0.129 0.871 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.101 0.899 39 H 0.130 0.870 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 10.709 -11.673 5.520 16.775 hybrid contribution 0.112 1.159 -0.384 1.227 sum 10.821 -10.513 5.136 15.937 Atomic orbital electron populations 1.24176 0.95322 1.07977 1.04450 1.24288 0.95296 0.93799 0.96517 1.17695 0.82798 0.93962 0.91122 1.43959 1.74569 1.07305 1.03885 1.19157 1.24399 0.84421 1.11241 0.90868 1.24906 0.96096 0.97788 1.00613 1.70141 1.19330 1.38342 1.25090 0.86365 0.79304 0.83111 0.78475 1.21456 1.21930 1.20505 1.19808 0.89959 0.94498 0.90517 1.21040 0.98842 0.93396 0.94841 1.21022 0.92451 0.99223 0.99203 1.20940 0.96962 0.95123 1.00817 1.19506 0.94474 0.94967 1.00076 1.21442 0.94392 0.95539 0.97276 1.23040 1.00776 0.97216 0.96215 1.22839 0.98848 0.99002 0.97477 1.22981 0.99804 0.96343 0.97732 1.20822 0.92915 0.99536 1.00571 1.20995 0.96575 0.95694 0.99886 0.79276 0.89109 0.94588 0.93570 0.93492 0.92404 0.86450 0.87081 0.89071 0.89655 0.91584 0.90422 0.91630 0.91712 0.89920 0.87016 0.86783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.92 19.25 29.55 0.57 -6.35 16 2 C -0.10 -2.36 11.50 -37.13 -0.43 -2.79 16 3 C 0.27 6.44 5.41 -6.83 -0.04 6.41 16 4 N -0.58 -14.07 2.47 -177.95 -0.44 -14.51 16 5 C -0.26 -7.03 9.63 -15.06 -0.14 -7.17 16 6 H 0.07 1.92 7.92 -52.49 -0.42 1.51 16 7 C 0.01 0.15 4.82 -17.43 -0.08 0.06 16 8 N -0.89 -25.30 9.61 55.49 0.53 -24.76 16 9 Si 0.90 21.65 29.61 -169.99 -5.03 16.62 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.18 3.67 5.80 -5.19 -0.03 3.64 16 14 C -0.08 -1.43 5.46 -104.63 -0.57 -2.00 16 15 C -0.10 -1.74 9.70 -39.58 -0.38 -2.13 16 16 C -0.12 -1.84 9.71 -39.59 -0.38 -2.22 16 17 C -0.09 -1.28 5.29 -104.63 -0.55 -1.83 16 18 C -0.07 -0.77 3.98 -90.96 -0.36 -1.13 16 19 C -0.14 -1.39 7.46 -25.92 -0.19 -1.58 16 20 C -0.14 -1.25 8.08 -25.92 -0.21 -1.46 16 21 C -0.13 -1.28 7.55 -25.92 -0.20 -1.48 16 22 C -0.12 -1.75 8.61 -39.58 -0.34 -2.10 16 23 C -0.11 -1.86 9.70 -39.58 -0.38 -2.24 16 24 H 0.19 3.66 7.80 -54.09 -0.42 3.24 16 25 H 0.09 2.38 6.59 -51.93 -0.34 2.04 16 26 H 0.04 0.76 8.12 -51.93 -0.42 0.34 16 27 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.05 0.92 8.02 -51.93 -0.42 0.50 16 29 H 0.06 1.19 7.98 -51.93 -0.41 0.77 16 30 H 0.12 2.02 8.06 -52.49 -0.42 1.60 16 31 H 0.11 1.47 8.05 -52.49 -0.42 1.04 16 32 H 0.09 0.98 8.09 -51.93 -0.42 0.56 16 33 H 0.08 0.91 6.31 -51.93 -0.33 0.58 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.84 7.72 -51.93 -0.40 0.44 16 39 H 0.11 1.39 6.66 -52.49 -0.35 1.04 16 40 H 0.11 1.77 8.06 -52.48 -0.42 1.34 16 LS Contribution 335.22 15.07 5.05 5.05 Total: -1.00 -29.41 335.22 -9.65 -39.06 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -6.02 Total: 2.93 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: -3.73 Total: -24.38 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.09 Total: -39.27 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.41 -9.65 -39.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799200445.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.117 kcal (2) G-P(sol) polarization free energy of solvation -29.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds