Wall clock time and date at job start Mon Mar 30 2020 01:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47124 * 242.34887 * 3 2 1 5 5 C 1.36939 * 120.00146 * 263.91302 * 4 3 2 6 6 H 1.07999 * 120.00388 * 199.35976 * 5 4 3 7 7 C 1.38810 * 119.99801 * 19.37062 * 5 4 3 8 8 N 1.31625 * 120.00285 * 22.29765 * 7 5 4 9 9 Si 1.86798 * 120.00062 * 202.30214 * 7 5 4 10 10 H 1.48507 * 109.47294 * 89.99622 * 9 7 5 11 11 H 1.48497 * 109.47201 * 209.99819 * 9 7 5 12 12 H 1.48502 * 109.47176 * 329.99779 * 9 7 5 13 13 C 1.46504 * 119.99757 * 83.92104 * 4 3 2 14 14 C 1.50695 * 109.47158 * 90.00178 * 13 4 3 15 15 C 1.38235 * 120.00371 * 89.99934 * 14 13 4 16 16 C 1.38237 * 119.99808 * 179.97438 * 15 14 13 17 17 C 1.38228 * 120.00431 * 359.97155 * 16 15 14 18 18 C 1.50693 * 120.00183 * 179.97438 * 17 16 15 19 19 C 1.53788 * 113.61642 * 217.49950 * 18 17 16 20 20 C 1.53774 * 87.08395 * 220.02005 * 19 18 17 21 21 C 1.53779 * 87.08306 * 25.43342 * 20 19 18 22 22 C 1.38236 * 119.99870 * 0.03304 * 17 16 15 23 23 C 1.38238 * 120.00100 * 359.96597 * 22 17 16 24 24 H 4.40636 * 5.51521 * 179.97438 * 4 1 2 25 25 H 1.09001 * 109.47230 * 122.34876 * 3 2 1 26 26 H 1.09000 * 109.47785 * 2.35160 * 3 2 1 27 27 H 0.96997 * 119.99658 * 180.02562 * 8 7 5 28 28 H 1.08996 * 109.46918 * 329.99406 * 13 4 3 29 29 H 1.08999 * 109.46559 * 209.99587 * 13 4 3 30 30 H 1.07997 * 119.99654 * 359.97438 * 15 14 13 31 31 H 1.07996 * 119.99384 * 179.70179 * 16 15 14 32 32 H 1.08997 * 112.85339 * 348.80811 * 18 17 16 33 33 H 1.09000 * 113.60991 * 334.57139 * 19 18 17 34 34 H 1.08999 * 113.61041 * 105.46963 * 19 18 17 35 35 H 1.09001 * 113.61864 * 270.88400 * 20 19 18 36 36 H 1.08996 * 113.61566 * 139.98006 * 20 19 18 37 37 H 1.09000 * 113.61568 * 220.02264 * 21 20 19 38 38 H 1.08999 * 113.69291 * 89.12555 * 21 20 19 39 39 H 1.08001 * 120.00471 * 180.02562 * 22 17 16 40 40 H 1.08004 * 120.00014 * 180.02562 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.6419 1.2235 5 6 3.4802 1.9667 1.2109 6 1 4.1181 2.3656 1.9858 7 6 3.0111 2.7971 0.2023 8 7 1.9267 2.4702 -0.4683 9 14 3.9188 4.3785 -0.2033 10 1 4.9439 4.1081 -1.2433 11 1 2.9538 5.3872 -0.7099 12 1 4.5804 4.8975 1.0207 13 6 3.2518 -0.1344 2.4604 14 6 4.6244 -0.7517 2.5372 15 6 5.6589 -0.0637 3.1433 16 6 6.9178 -0.6303 3.2142 17 6 7.1421 -1.8851 2.6795 18 6 8.5146 -2.5025 2.7562 19 6 8.9001 -3.3051 1.5023 20 6 9.5320 -4.3360 2.4524 21 6 8.5487 -3.8350 3.5234 22 6 6.1077 -2.5731 2.0733 23 6 4.8487 -2.0066 2.0024 24 1 -1.0501 0.0001 -0.0002 25 1 3.0091 0.5507 -0.8682 26 1 3.0099 -1.0259 -0.0422 27 1 1.5992 3.0503 -1.1733 28 1 2.4982 -0.9217 2.4683 29 1 3.1004 0.5223 3.3171 30 1 5.4835 0.9165 3.5615 31 1 7.7270 -0.0908 3.6835 32 1 9.2797 -1.7951 3.0757 33 1 8.0430 -3.6890 0.9491 34 1 9.6240 -2.7978 0.8647 35 1 10.5762 -4.1304 2.6880 36 1 9.3605 -5.3696 2.1517 37 1 8.9890 -3.7553 4.5173 38 1 7.5952 -4.3630 3.5239 39 1 6.2827 -3.5537 1.6558 40 1 4.0404 -2.5443 1.5291 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799200445.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:19 Heat of formation + Delta-G solvation = 107.051341 kcal Electronic energy + Delta-G solvation = -19757.096992 eV Core-core repulsion = 16925.032848 eV Total energy + Delta-G solvation = -2832.064144 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.85458 -38.99874 -37.49769 -33.80186 -33.44521 -31.75067 -31.58691 -28.33648 -27.78354 -26.41497 -25.45215 -23.59135 -23.30760 -21.64512 -19.94550 -19.28375 -18.27780 -17.44747 -16.99402 -16.46461 -15.99427 -15.74410 -15.55046 -15.21207 -14.97145 -14.48442 -14.15855 -13.98425 -13.42527 -13.38086 -13.27184 -13.19290 -12.76757 -12.57036 -12.54421 -12.38905 -12.19098 -12.00230 -11.75149 -11.34770 -11.21685 -11.00806 -10.80592 -10.70829 -10.34833 -9.66506 -9.27968 -8.89322 -7.82886 -5.26199 0.57142 0.65423 1.45500 1.48477 1.55435 2.32133 2.51462 2.59011 2.96472 3.28524 3.78910 3.80855 3.91570 3.95506 4.06912 4.10579 4.19308 4.25379 4.27182 4.34031 4.52379 4.72013 4.81881 4.86937 4.89481 4.93485 4.99016 5.02755 5.14737 5.15528 5.25012 5.26556 5.30635 5.38843 5.58952 5.61820 5.67507 5.71245 5.88368 5.95752 6.27279 6.29944 7.09777 7.35195 7.81660 8.25904 9.18013 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021785 B = 0.004709 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.981823 B = 5944.086620 C = 6627.310587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 C -0.135 4.135 3 C 0.275 3.725 4 N -0.591 5.591 5 C -0.265 4.265 6 H 0.071 0.929 7 C -0.043 4.043 8 N -0.912 5.912 9 Si 0.956 3.044 10 H -0.288 1.288 11 H -0.299 1.299 12 H -0.272 1.272 13 C 0.183 3.817 14 C -0.099 4.099 15 C -0.117 4.117 16 C -0.126 4.126 17 C -0.083 4.083 18 C -0.075 4.075 19 C -0.139 4.139 20 C -0.133 4.133 21 C -0.129 4.129 22 C -0.119 4.119 23 C -0.120 4.120 24 H 0.223 0.777 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.246 0.754 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.109 0.891 31 H 0.131 0.869 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.136 0.864 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.466 -13.162 6.123 19.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 C -0.138 4.138 3 C 0.150 3.850 4 N -0.311 5.311 5 C -0.394 4.394 6 H 0.089 0.911 7 C -0.240 4.240 8 N -0.556 5.556 9 Si 0.785 3.215 10 H -0.215 1.215 11 H -0.226 1.226 12 H -0.197 1.197 13 C 0.057 3.943 14 C -0.102 4.102 15 C -0.135 4.135 16 C -0.144 4.144 17 C -0.083 4.083 18 C -0.094 4.094 19 C -0.176 4.176 20 C -0.170 4.170 21 C -0.166 4.166 22 C -0.137 4.137 23 C -0.139 4.139 24 H 0.239 0.761 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.127 0.873 31 H 0.149 0.851 32 H 0.118 0.882 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.154 0.846 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 12.407 -13.047 6.023 18.985 hybrid contribution -0.381 1.498 -0.466 1.615 sum 12.025 -11.548 5.557 17.574 Atomic orbital electron populations 1.25007 0.96343 1.06573 1.02972 1.24653 0.96120 0.95129 0.97921 1.17570 0.82892 0.94581 0.89992 1.44123 1.74788 1.06991 1.05189 1.19385 1.23533 0.85615 1.10883 0.91121 1.25532 0.96858 1.00560 1.01015 1.70289 1.20589 1.39201 1.25553 0.85444 0.77934 0.79944 0.78194 1.21546 1.22562 1.19667 1.19815 0.91755 0.94040 0.88641 1.20754 0.97618 0.94604 0.97194 1.21074 0.93418 0.99162 0.99891 1.21188 0.96566 0.95787 1.00829 1.19900 0.95910 0.94323 0.98208 1.21594 0.92701 0.96343 0.98722 1.23067 1.00909 0.97600 0.96013 1.22806 0.99136 0.99088 0.96000 1.22967 1.00133 0.95066 0.98438 1.21084 0.92119 1.00443 1.00004 1.21120 0.97791 0.95160 0.99799 0.76061 0.92050 0.92226 0.94418 0.93000 0.93361 0.87326 0.85083 0.88237 0.90061 0.91359 0.89213 0.90633 0.90824 0.90296 0.84617 0.86186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -13.17 19.25 74.32 1.43 -11.74 16 2 C -0.14 -6.69 11.50 31.12 0.36 -6.33 16 3 C 0.27 13.37 5.41 84.57 0.46 13.83 16 4 N -0.59 -29.26 2.47 -716.92 -1.77 -31.04 16 5 C -0.26 -14.36 9.63 84.03 0.81 -13.55 16 6 H 0.07 3.78 7.92 -2.91 -0.02 3.76 16 7 C -0.04 -2.39 4.82 84.86 0.41 -1.98 16 8 N -0.91 -53.03 9.61 21.65 0.21 -52.82 16 9 Si 0.96 45.21 29.61 68.60 2.03 47.24 16 10 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 11 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 12 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 13 C 0.18 7.63 5.80 85.63 0.50 8.12 16 14 C -0.10 -3.63 5.46 -19.87 -0.11 -3.74 16 15 C -0.12 -4.05 9.70 22.27 0.22 -3.84 16 16 C -0.13 -3.68 9.71 22.27 0.22 -3.46 16 17 C -0.08 -2.19 5.29 -19.87 -0.11 -2.29 16 18 C -0.08 -1.49 3.98 -11.01 -0.04 -1.54 16 19 C -0.14 -2.45 7.46 31.12 0.23 -2.22 16 20 C -0.13 -1.85 8.08 31.12 0.25 -1.60 16 21 C -0.13 -2.11 7.55 31.12 0.23 -1.88 16 22 C -0.12 -3.23 8.61 22.27 0.19 -3.04 16 23 C -0.12 -3.85 9.70 22.27 0.22 -3.63 16 24 H 0.22 8.13 7.80 -4.41 -0.03 8.09 16 25 H 0.06 3.32 6.59 -2.39 -0.02 3.31 16 26 H 0.06 2.54 8.12 -2.39 -0.02 2.52 16 27 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 28 H 0.05 2.06 8.02 -2.39 -0.02 2.04 16 29 H 0.05 2.05 7.98 -2.39 -0.02 2.03 16 30 H 0.11 3.84 8.06 -2.91 -0.02 3.82 16 31 H 0.13 3.22 8.05 -2.91 -0.02 3.20 16 32 H 0.10 1.83 8.09 -2.39 -0.02 1.81 16 33 H 0.08 1.50 6.31 -2.39 -0.02 1.48 16 34 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.08 1.37 7.72 -2.39 -0.02 1.35 16 39 H 0.14 3.01 6.66 -2.91 -0.02 2.99 16 40 H 0.12 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -62.78 335.22 6.73 -56.05 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 1.00 Total: 19.45 kcal Atomic # 6 Polarization: -44.14 SS G_CDS: 5.26 Total: -38.88 kcal Atomic # 7 Polarization: -82.29 SS G_CDS: -1.56 Total: -83.86 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -62.78 6.73 -56.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799200445.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.101 kcal (2) G-P(sol) polarization free energy of solvation -62.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds