Wall clock time and date at job start Mon Mar 30 2020 01:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00026 * 2 1 4 4 H 1.48498 * 109.46960 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46842 * 299.99720 * 3 2 1 6 6 H 1.48497 * 109.47039 * 59.99699 * 3 2 1 7 7 C 1.37878 * 119.99770 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99779 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00406 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47105 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47174 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47508 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47439 * 179.97438 * 12 11 10 14 14 O 1.21278 * 119.99700 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00255 * 179.97438 * 13 12 11 16 16 C 1.46499 * 120.00088 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.47251 * 179.97438 * 16 15 13 18 18 O 1.42899 * 109.46892 * 65.00133 * 17 16 15 19 19 C 1.42902 * 113.99903 * 180.02562 * 18 17 16 20 20 C 1.53786 * 113.61284 * 209.99760 * 19 18 17 21 21 C 1.53781 * 87.17350 * 220.06071 * 20 19 18 22 22 C 1.53782 * 87.08260 * 25.39213 * 21 20 19 23 23 H 0.96999 * 119.99966 * 359.97438 * 1 2 3 24 24 H 1.08993 * 109.46950 * 59.99731 * 9 7 2 25 25 H 1.08998 * 109.46625 * 299.99732 * 9 7 2 26 26 H 1.09001 * 109.47680 * 59.99956 * 10 9 7 27 27 H 1.08998 * 109.47564 * 299.99765 * 10 9 7 28 28 H 1.09003 * 109.47397 * 59.99419 * 11 10 9 29 29 H 1.09003 * 109.47120 * 300.00194 * 11 10 9 30 30 H 1.09001 * 109.47579 * 59.99785 * 12 11 10 31 31 H 1.09003 * 109.47022 * 300.00172 * 12 11 10 32 32 H 0.97006 * 119.99706 * 0.02562 * 15 13 12 33 33 H 1.08997 * 109.46958 * 60.00496 * 16 15 13 34 34 H 1.09002 * 109.47228 * 299.99806 * 16 15 13 35 35 H 1.08998 * 109.46970 * 305.00750 * 17 16 15 36 36 H 1.08997 * 109.47169 * 185.00074 * 17 16 15 37 37 H 1.08993 * 112.90736 * 341.24804 * 19 18 17 38 38 H 1.09002 * 113.61357 * 105.46987 * 20 19 18 39 39 H 1.09002 * 113.61608 * 334.65149 * 20 19 18 40 40 H 1.09001 * 113.61695 * 139.93969 * 21 20 19 41 41 H 1.08997 * 113.61223 * 270.84552 * 21 20 19 42 42 H 1.08997 * 113.61668 * 89.11298 * 22 21 20 43 43 H 1.08998 * 113.61674 * 219.93807 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4803 -4.9871 -0.0001 12 6 2.4745 -6.1500 0.0005 13 6 1.7210 -7.4552 0.0005 14 8 0.5082 -7.4552 0.0005 15 7 2.3948 -8.6224 0.0005 16 6 1.6624 -9.8911 0.0011 17 6 2.6566 -11.0540 0.0003 18 8 3.3998 -11.0461 1.2208 19 6 4.3622 -12.0975 1.3221 20 6 4.6210 -12.5587 2.7662 21 6 6.1083 -12.6564 2.3877 22 6 5.8206 -11.6044 1.3036 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 2.8720 -3.6044 0.8905 27 1 2.8719 -3.6044 -0.8894 28 1 0.8538 -5.0446 -0.8903 29 1 0.8533 -5.0451 0.8896 30 1 3.1006 -6.0924 0.8909 31 1 3.1018 -6.0922 -0.8890 32 1 3.3649 -8.6223 0.0009 33 1 1.0354 -9.9490 -0.8887 34 1 1.0360 -9.9487 0.8914 35 1 3.3401 -10.9471 -0.8419 36 1 2.1145 -11.9954 -0.0888 37 1 4.1696 -12.9171 0.6299 38 1 4.1672 -13.5205 3.0053 39 1 4.4099 -11.7937 3.5134 40 1 6.7818 -12.3050 3.1694 41 1 6.3939 -13.6291 1.9873 42 1 5.9372 -10.5775 1.6498 43 1 6.3363 -11.7949 0.3624 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805186446.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:27 Heat of formation + Delta-G solvation = -95.034124 kcal Electronic energy + Delta-G solvation = -19653.564432 eV Core-core repulsion = 16505.428285 eV Total energy + Delta-G solvation = -3148.136147 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.87464 -39.39234 -36.82610 -34.93098 -34.39342 -32.57958 -30.36728 -29.00044 -26.09318 -25.65251 -25.02079 -23.14860 -21.94614 -20.32685 -20.03234 -19.88684 -17.70526 -16.83450 -16.44835 -16.09994 -15.89568 -15.70677 -15.13405 -14.71718 -14.39217 -14.14245 -13.51786 -13.22212 -13.04470 -12.86740 -12.56895 -12.40299 -12.10421 -11.82541 -11.63841 -11.56827 -11.39186 -11.16048 -10.95988 -10.84688 -10.47964 -10.45211 -10.35734 -9.89205 -9.71740 -9.56236 -9.17132 -9.09706 -8.92688 -8.27382 -5.91972 -3.94218 2.81435 3.15362 3.28638 3.35459 3.42463 3.46655 4.12509 4.16846 4.35954 4.40793 4.51860 4.62275 4.78254 4.82863 4.96358 5.03520 5.24057 5.34388 5.35775 5.40477 5.43100 5.44782 5.47473 5.49403 5.62928 5.70327 5.85207 5.94552 6.20592 6.36291 6.38689 6.61253 6.83208 6.90278 7.08355 7.25362 7.52549 7.78500 7.94834 8.10046 8.35124 8.51896 9.13795 9.69213 11.19412 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.031767 B = 0.002363 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.206570 B =11844.496228 C =12496.060957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.138 4.138 13 C 0.511 3.489 14 O -0.538 6.538 15 N -0.733 5.733 16 C 0.121 3.879 17 C 0.049 3.951 18 O -0.370 6.370 19 C 0.060 3.940 20 C -0.138 4.138 21 C -0.143 4.143 22 C -0.157 4.157 23 H 0.259 0.741 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.402 0.598 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.594 -28.906 1.297 31.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.147 4.147 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.141 4.141 12 C -0.178 4.178 13 C 0.299 3.701 14 O -0.415 6.415 15 N -0.387 5.387 16 C -0.003 4.003 17 C -0.028 4.028 18 O -0.289 6.289 19 C 0.002 3.998 20 C -0.176 4.176 21 C -0.181 4.181 22 C -0.195 4.195 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.236 0.764 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.110 0.890 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.110 0.890 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.516 -28.660 1.439 30.562 hybrid contribution 0.957 0.654 -0.220 1.180 sum 11.472 -28.006 1.219 30.289 Atomic orbital electron populations 1.69989 1.06035 1.26348 1.51113 1.25054 0.94852 0.99244 0.95540 0.86552 0.80074 0.83944 0.77514 1.19792 1.21085 1.21067 1.21329 0.93013 0.91199 1.50125 0.92712 1.19106 0.94096 0.91302 0.97327 1.21647 0.99059 0.94031 1.00045 1.21447 0.97032 0.92712 1.02927 1.21782 1.00064 0.92031 1.03935 1.21095 0.88420 0.85621 0.74978 1.90701 1.14275 1.87729 1.48752 1.46008 1.10370 1.05391 1.76970 1.21322 0.93919 0.81935 1.03091 1.22831 0.94158 0.98370 0.87437 1.88026 1.52187 1.50710 1.37986 1.23803 0.88012 0.90044 0.97934 1.23213 0.95907 1.01790 0.96640 1.22657 0.96678 0.99424 0.99293 1.23516 0.96126 1.00355 0.99499 0.93132 0.96584 0.96567 0.93485 0.93512 0.91842 0.91828 0.89160 0.89235 0.76402 0.90134 0.90748 0.92542 0.91730 0.89601 0.91103 0.89027 0.90646 0.90056 0.89048 0.91320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.88 13.29 55.43 0.74 -27.14 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.52 -15.17 9.11 -34.44 -0.31 -15.49 16 8 H 0.05 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.51 4.97 -27.89 -0.14 0.37 16 10 C -0.11 -2.33 5.15 -26.74 -0.14 -2.47 16 11 C -0.10 -1.92 4.50 -26.73 -0.12 -2.04 16 12 C -0.14 -1.93 5.70 -27.88 -0.16 -2.09 16 13 C 0.51 7.51 7.83 -10.99 -0.09 7.42 16 14 O -0.54 -10.21 15.98 5.56 0.09 -10.12 16 15 N -0.73 -7.95 5.50 -60.29 -0.33 -8.28 16 16 C 0.12 1.16 6.06 -4.04 -0.02 1.14 16 17 C 0.05 0.34 5.91 37.16 0.22 0.56 16 18 O -0.37 -3.16 10.30 -35.23 -0.36 -3.53 16 19 C 0.06 0.39 4.32 -25.82 -0.11 0.28 16 20 C -0.14 -0.84 7.91 -25.92 -0.20 -1.05 16 21 C -0.14 -0.73 8.08 -25.92 -0.21 -0.94 16 22 C -0.16 -0.93 7.92 -25.82 -0.20 -1.13 16 23 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 29 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 30 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.40 3.42 8.47 -40.82 -0.35 3.07 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 0.43 7.87 -51.93 -0.41 0.02 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 357.72 15.07 5.39 5.39 Total: -1.00 -34.55 357.72 -8.99 -43.54 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -7.90 Total: -3.06 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -1.59 Total: -13.95 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.40 Total: -35.42 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.27 Total: -13.65 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.55 -8.99 -43.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805186446.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.490 kcal (2) G-P(sol) polarization free energy of solvation -34.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds