Wall clock time and date at job start Mon Mar 30 2020 01:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00104 * 2 1 4 4 H 1.48497 * 109.47109 * 270.00171 * 3 2 1 5 5 H 1.48508 * 109.47182 * 30.00258 * 3 2 1 6 6 H 1.48501 * 109.46867 * 149.99954 * 3 2 1 7 7 C 1.37870 * 119.99761 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00306 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99941 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46970 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46812 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46812 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47060 * 179.97438 * 12 11 10 14 14 O 1.21281 * 119.99704 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00218 * 180.02562 * 13 12 11 16 16 O 1.41596 * 120.00190 * 180.02562 * 15 13 12 17 17 C 1.42896 * 114.00215 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.46906 * 84.99737 * 17 16 15 19 19 C 1.52999 * 109.47317 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.47159 * 300.00546 * 19 18 17 21 21 C 1.52997 * 109.47452 * 59.99536 * 20 19 18 22 22 C 1.53000 * 109.47231 * 204.99596 * 17 16 15 23 23 H 0.97008 * 119.99763 * 359.97438 * 1 2 3 24 24 H 1.08993 * 109.47309 * 59.99730 * 9 7 2 25 25 H 1.08996 * 109.46715 * 299.99221 * 9 7 2 26 26 H 1.09002 * 109.46958 * 59.99830 * 10 9 7 27 27 H 1.09001 * 109.47140 * 300.00035 * 10 9 7 28 28 H 1.08993 * 109.47262 * 60.00122 * 11 10 9 29 29 H 1.09005 * 109.47063 * 299.99672 * 11 10 9 30 30 H 1.09002 * 109.46958 * 59.99985 * 12 11 10 31 31 H 1.08992 * 109.47085 * 299.99980 * 12 11 10 32 32 H 0.97000 * 119.99801 * 359.97438 * 15 13 12 33 33 H 1.09002 * 109.46984 * 324.99916 * 17 16 15 34 34 H 1.08996 * 109.47853 * 300.00254 * 18 17 16 35 35 H 1.09002 * 109.47153 * 60.00282 * 18 17 16 36 36 H 1.09000 * 109.47486 * 180.02562 * 19 18 17 37 37 H 1.09002 * 109.46716 * 60.00091 * 19 18 17 38 38 H 1.09002 * 109.46935 * 299.99411 * 20 19 18 39 39 H 1.09001 * 109.46812 * 179.97438 * 20 19 18 40 40 H 1.08993 * 109.47194 * 179.97438 * 21 20 19 41 41 H 1.09002 * 109.46695 * 59.99734 * 21 20 19 42 42 H 1.08992 * 109.47399 * 300.00058 * 22 17 16 43 43 H 1.09004 * 109.46724 * 60.00544 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 5.5515 -2.6366 -0.0001 12 6 6.0614 -4.0792 0.0004 13 6 7.5684 -4.0793 -0.0003 14 8 8.1748 -3.0289 -0.0006 15 7 8.2423 -5.2464 -0.0005 16 8 9.6582 -5.2465 -0.0006 17 6 10.2394 -6.5519 -0.0003 18 6 10.3318 -7.0694 -1.4371 19 6 10.9547 -8.4668 -1.4369 20 6 12.3566 -8.4003 -0.8276 21 6 12.2642 -7.8828 0.6093 22 6 11.6413 -6.4859 0.6092 23 1 -0.4850 0.8401 0.0004 24 1 3.8745 -0.6808 0.8904 25 1 3.8751 -0.6798 -0.8895 26 1 3.6584 -3.1502 -0.8903 27 1 3.6577 -3.1506 0.8897 28 1 5.9148 -2.1229 0.8898 29 1 5.9148 -2.1228 -0.8902 30 1 5.6980 -4.5933 -0.8894 31 1 5.6981 -4.5926 0.8905 32 1 7.7572 -6.0865 0.0001 33 1 9.6182 -7.2261 0.5894 34 1 9.3332 -7.1164 -1.8714 35 1 10.9531 -6.3953 -2.0268 36 1 11.0210 -8.8353 -2.4606 37 1 10.3338 -9.1412 -0.8471 38 1 12.9775 -7.7259 -1.4174 39 1 12.8001 -9.3960 -0.8270 40 1 13.2628 -7.8359 1.0435 41 1 11.6433 -8.5572 1.1990 42 1 12.2625 -5.8119 0.0195 43 1 11.5754 -6.1173 1.6329 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805199741.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:25 Heat of formation + Delta-G solvation = -77.267031 kcal Electronic energy + Delta-G solvation = -19979.729742 eV Core-core repulsion = 16832.364034 eV Total energy + Delta-G solvation = -3147.365708 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.82555 -38.99681 -36.53540 -34.99799 -32.80119 -32.30393 -31.30042 -30.25971 -29.32444 -25.83369 -23.17582 -22.86977 -22.24630 -20.72052 -20.03105 -20.00580 -18.33128 -16.94353 -16.52752 -16.02425 -15.85109 -15.13644 -14.83364 -14.57333 -14.29921 -14.14259 -13.84202 -13.41751 -13.32165 -12.74047 -12.64009 -12.50600 -12.17230 -12.02562 -11.75069 -11.65110 -11.49949 -11.11992 -11.11708 -10.91873 -10.74698 -10.54849 -10.52739 -9.98749 -9.81850 -9.64134 -9.45955 -9.11173 -8.98291 -8.48110 -5.99426 -3.96918 1.76388 2.67306 3.36967 3.43955 3.50233 4.00667 4.16819 4.19142 4.51483 4.51566 4.58254 4.66191 4.72395 4.82775 4.93076 4.96928 5.08407 5.15653 5.24123 5.32170 5.35517 5.50628 5.51340 5.58990 5.64357 5.69365 5.69979 5.77531 5.88998 6.00961 6.11879 6.39343 6.67468 6.69877 6.82847 6.99058 7.19708 7.39066 7.51797 7.85813 8.26044 8.59151 9.05415 9.63993 11.13976 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.055851 B = 0.002426 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.215429 B =11539.782592 C =11789.446558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.016 4.016 10 C -0.102 4.102 11 C -0.107 4.107 12 C -0.125 4.125 13 C 0.521 3.479 14 O -0.519 6.519 15 N -0.605 5.605 16 O -0.143 6.143 17 C 0.063 3.937 18 C -0.144 4.144 19 C -0.117 4.117 20 C -0.124 4.124 21 C -0.115 4.115 22 C -0.112 4.112 23 H 0.262 0.738 24 H 0.016 0.984 25 H 0.012 0.988 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.404 0.596 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.210 -20.737 -0.493 31.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.137 4.137 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.054 4.054 10 C -0.140 4.140 11 C -0.145 4.145 12 C -0.165 4.165 13 C 0.310 3.690 14 O -0.392 6.392 15 N -0.309 5.309 16 O -0.147 6.147 17 C 0.005 3.995 18 C -0.182 4.182 19 C -0.155 4.155 20 C -0.162 4.162 21 C -0.152 4.152 22 C -0.151 4.151 23 H 0.072 0.928 24 H 0.034 0.966 25 H 0.030 0.970 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.244 0.756 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 24.619 -19.650 -0.494 31.503 hybrid contribution 0.204 0.152 -0.073 0.265 sum 24.823 -19.497 -0.567 31.570 Atomic orbital electron populations 1.69926 1.06300 1.26814 1.51487 1.25047 0.94750 0.99251 0.94625 0.86771 0.80441 0.83523 0.78548 1.20317 1.21477 1.18866 1.21176 0.89643 0.94376 1.50508 0.91098 1.19583 0.96919 0.92445 0.96410 1.21479 0.91405 1.00047 1.01043 1.21531 0.97325 0.92363 1.03285 1.21753 0.87752 1.02338 1.04692 1.21339 0.90014 0.82088 0.75609 1.90730 1.69652 1.30877 1.47906 1.47923 0.94219 1.09586 1.79164 1.90618 1.01522 1.25601 1.96909 1.22623 0.95334 0.85040 0.96529 1.22107 1.01973 0.97285 0.96806 1.21506 0.96372 0.96279 1.01343 1.21601 0.97108 1.01363 0.96101 1.21495 1.01132 0.95452 0.97165 1.21534 0.93563 0.98202 1.01754 0.92831 0.96550 0.96982 0.92752 0.92715 0.91512 0.91515 0.88519 0.88505 0.75607 0.90834 0.91473 0.90804 0.91429 0.91813 0.91644 0.91657 0.91032 0.91670 0.90652 0.90768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.39 13.96 55.43 0.77 -27.62 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 22.43 27.47 -169.99 -4.67 17.76 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.26 -6.54 6.54 56.52 0.37 -6.17 16 7 C -0.52 -15.05 9.66 -34.44 -0.33 -15.39 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.02 -0.40 4.04 -27.88 -0.11 -0.51 16 10 C -0.10 -1.97 5.15 -26.73 -0.14 -2.11 16 11 C -0.11 -1.78 4.50 -26.73 -0.12 -1.90 16 12 C -0.13 -1.52 5.70 -27.88 -0.16 -1.68 16 13 C 0.52 7.42 7.97 -10.99 -0.09 7.33 16 14 O -0.52 -10.00 16.39 -12.63 -0.21 -10.20 16 15 N -0.60 -6.67 6.37 31.22 0.20 -6.47 16 16 O -0.14 -1.76 10.75 -29.66 -0.32 -2.08 16 17 C 0.06 0.50 2.74 -26.73 -0.07 0.43 16 18 C -0.14 -1.01 5.57 -26.73 -0.15 -1.16 16 19 C -0.12 -0.61 5.92 -26.73 -0.16 -0.77 16 20 C -0.12 -0.61 5.92 -26.73 -0.16 -0.76 16 21 C -0.11 -0.58 5.92 -26.76 -0.16 -0.74 16 22 C -0.11 -0.79 5.57 -26.76 -0.15 -0.94 16 23 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 24 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 25 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 29 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 30 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.40 2.82 8.43 -40.82 -0.34 2.48 16 33 H 0.07 0.48 7.94 -51.93 -0.41 0.06 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 40 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 347.47 15.07 5.24 5.24 Total: -1.00 -35.42 347.47 -8.75 -44.17 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -7.87 Total: -4.41 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -1.89 Total: -16.38 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 0.97 Total: -34.09 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: -0.53 Total: -12.28 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.67 Total: 17.76 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.42 -8.75 -44.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805199741.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.100 kcal (2) G-P(sol) polarization free energy of solvation -35.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds