Wall clock time and date at job start Mon Mar 30 2020 01:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00104 * 2 1 4 4 H 1.48497 * 109.47109 * 270.00171 * 3 2 1 5 5 H 1.48508 * 109.47182 * 30.00258 * 3 2 1 6 6 H 1.48501 * 109.46867 * 149.99954 * 3 2 1 7 7 C 1.37870 * 119.99761 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00306 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99941 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46970 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46812 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46812 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47060 * 179.97438 * 12 11 10 14 14 O 1.21281 * 119.99704 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00218 * 180.02562 * 13 12 11 16 16 O 1.41596 * 120.00190 * 180.02562 * 15 13 12 17 17 C 1.42896 * 114.00215 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.46906 * 84.99737 * 17 16 15 19 19 C 1.52999 * 109.47317 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.47159 * 300.00546 * 19 18 17 21 21 C 1.52997 * 109.47452 * 59.99536 * 20 19 18 22 22 C 1.53000 * 109.47231 * 204.99596 * 17 16 15 23 23 H 0.97008 * 119.99763 * 359.97438 * 1 2 3 24 24 H 1.08993 * 109.47309 * 59.99730 * 9 7 2 25 25 H 1.08996 * 109.46715 * 299.99221 * 9 7 2 26 26 H 1.09002 * 109.46958 * 59.99830 * 10 9 7 27 27 H 1.09001 * 109.47140 * 300.00035 * 10 9 7 28 28 H 1.08993 * 109.47262 * 60.00122 * 11 10 9 29 29 H 1.09005 * 109.47063 * 299.99672 * 11 10 9 30 30 H 1.09002 * 109.46958 * 59.99985 * 12 11 10 31 31 H 1.08992 * 109.47085 * 299.99980 * 12 11 10 32 32 H 0.97000 * 119.99801 * 359.97438 * 15 13 12 33 33 H 1.09002 * 109.46984 * 324.99916 * 17 16 15 34 34 H 1.08996 * 109.47853 * 300.00254 * 18 17 16 35 35 H 1.09002 * 109.47153 * 60.00282 * 18 17 16 36 36 H 1.09000 * 109.47486 * 180.02562 * 19 18 17 37 37 H 1.09002 * 109.46716 * 60.00091 * 19 18 17 38 38 H 1.09002 * 109.46935 * 299.99411 * 20 19 18 39 39 H 1.09001 * 109.46812 * 179.97438 * 20 19 18 40 40 H 1.08993 * 109.47194 * 179.97438 * 21 20 19 41 41 H 1.09002 * 109.46695 * 59.99734 * 21 20 19 42 42 H 1.08992 * 109.47399 * 300.00058 * 22 17 16 43 43 H 1.09004 * 109.46724 * 60.00544 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 5.5515 -2.6366 -0.0001 12 6 6.0614 -4.0792 0.0004 13 6 7.5684 -4.0793 -0.0003 14 8 8.1748 -3.0289 -0.0006 15 7 8.2423 -5.2464 -0.0005 16 8 9.6582 -5.2465 -0.0006 17 6 10.2394 -6.5519 -0.0003 18 6 10.3318 -7.0694 -1.4371 19 6 10.9547 -8.4668 -1.4369 20 6 12.3566 -8.4003 -0.8276 21 6 12.2642 -7.8828 0.6093 22 6 11.6413 -6.4859 0.6092 23 1 -0.4850 0.8401 0.0004 24 1 3.8745 -0.6808 0.8904 25 1 3.8751 -0.6798 -0.8895 26 1 3.6584 -3.1502 -0.8903 27 1 3.6577 -3.1506 0.8897 28 1 5.9148 -2.1229 0.8898 29 1 5.9148 -2.1228 -0.8902 30 1 5.6980 -4.5933 -0.8894 31 1 5.6981 -4.5926 0.8905 32 1 7.7572 -6.0865 0.0001 33 1 9.6182 -7.2261 0.5894 34 1 9.3332 -7.1164 -1.8714 35 1 10.9531 -6.3953 -2.0268 36 1 11.0210 -8.8353 -2.4606 37 1 10.3338 -9.1412 -0.8471 38 1 12.9775 -7.7259 -1.4174 39 1 12.8001 -9.3960 -0.8270 40 1 13.2628 -7.8359 1.0435 41 1 11.6433 -8.5572 1.1990 42 1 12.2625 -5.8119 0.0195 43 1 11.5754 -6.1173 1.6329 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805199741.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:24 Heat of formation + Delta-G solvation = -99.139064 kcal Electronic energy + Delta-G solvation = -19980.678184 eV Core-core repulsion = 16832.364034 eV Total energy + Delta-G solvation = -3148.314151 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.75795 -39.78590 -37.33048 -36.58918 -34.61066 -33.51897 -31.81093 -31.66219 -30.18436 -27.49342 -24.04486 -23.58075 -23.34642 -21.84575 -21.51299 -20.68286 -19.16576 -18.82071 -17.89633 -17.00519 -16.59438 -16.33023 -16.01362 -15.54771 -15.30534 -15.19588 -14.81710 -14.66718 -14.20432 -13.92295 -13.83981 -13.68545 -13.49586 -13.20900 -12.87416 -12.71788 -12.33721 -12.13487 -12.07824 -12.06364 -11.74513 -11.56083 -11.51103 -11.41874 -11.32346 -11.24210 -11.08648 -10.90760 -10.74397 -9.90860 -8.28265 -6.30835 0.89534 1.35862 1.37360 1.50137 1.60491 2.37077 3.07287 3.32896 3.62442 3.66432 3.73576 3.98942 4.00824 4.16539 4.17408 4.20480 4.30125 4.46497 4.50134 4.60645 4.60924 4.66487 4.77046 4.85459 4.89731 4.98309 5.05150 5.15343 5.15791 5.16773 5.22564 5.27227 5.30363 5.32636 5.45862 5.62914 5.68430 5.70419 5.83975 6.30812 6.33802 6.77287 7.29381 7.33935 8.88121 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.055851 B = 0.002426 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.215429 B =11539.782592 C =11789.446558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.003 3.997 3 Si 0.946 3.054 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.253 1.253 7 C -0.528 4.528 8 H 0.039 0.961 9 C -0.019 4.019 10 C -0.093 4.093 11 C -0.100 4.100 12 C -0.114 4.114 13 C 0.521 3.479 14 O -0.579 6.579 15 N -0.587 5.587 16 O -0.175 6.175 17 C 0.059 3.941 18 C -0.141 4.141 19 C -0.114 4.114 20 C -0.125 4.125 21 C -0.109 4.109 22 C -0.112 4.112 23 H 0.265 0.735 24 H 0.013 0.987 25 H 0.012 0.988 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.425 0.575 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.057 0.943 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.061 0.939 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.603 -22.394 -0.374 34.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.194 4.194 3 Si 0.770 3.230 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.176 1.176 7 C -0.566 4.566 8 H 0.058 0.942 9 C -0.057 4.057 10 C -0.130 4.130 11 C -0.138 4.138 12 C -0.154 4.154 13 C 0.310 3.690 14 O -0.457 6.457 15 N -0.291 5.291 16 O -0.179 6.179 17 C 0.001 3.999 18 C -0.179 4.179 19 C -0.151 4.151 20 C -0.162 4.162 21 C -0.147 4.147 22 C -0.151 4.151 23 H 0.074 0.926 24 H 0.032 0.968 25 H 0.031 0.969 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.145 0.855 31 H 0.146 0.854 32 H 0.269 0.731 33 H 0.112 0.888 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 26.019 -21.385 -0.377 33.681 hybrid contribution -0.243 0.557 -0.112 0.618 sum 25.776 -20.828 -0.489 33.142 Atomic orbital electron populations 1.70062 1.08063 1.28006 1.52995 1.25986 0.95623 1.03358 0.94429 0.85712 0.79393 0.78758 0.79125 1.19306 1.20818 1.17647 1.21546 0.92088 0.93223 1.49726 0.94249 1.19597 0.93907 0.96054 0.96113 1.21330 0.93252 0.96704 1.01732 1.21324 0.95081 0.95379 1.02031 1.21662 0.86312 0.99751 1.07681 1.21624 0.90731 0.81890 0.74707 1.90711 1.70904 1.33094 1.51023 1.47653 0.94292 1.09839 1.77275 1.90620 1.01789 1.28517 1.97021 1.22892 0.95700 0.83767 0.97534 1.22079 1.01888 0.98079 0.95865 1.21500 0.96536 0.95094 1.01977 1.21617 0.96930 1.01911 0.95764 1.21484 1.01546 0.94101 0.97564 1.21575 0.93090 0.99402 1.01046 0.92573 0.96825 0.96935 0.92051 0.92040 0.92906 0.92866 0.85473 0.85427 0.73110 0.88810 0.91359 0.92540 0.90954 0.90603 0.92388 0.90316 0.90282 0.90592 0.92001 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.45 13.96 21.45 0.30 -60.15 16 2 C 0.00 0.16 5.47 84.65 0.46 0.62 16 3 Si 0.95 46.14 27.47 68.60 1.88 48.02 16 4 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.25 -11.75 6.54 99.48 0.65 -11.10 16 7 C -0.53 -30.89 9.66 25.60 0.25 -30.64 16 8 H 0.04 2.48 7.99 -2.91 -0.02 2.45 16 9 C -0.02 -0.93 4.04 29.85 0.12 -0.81 16 10 C -0.09 -3.44 5.15 30.60 0.16 -3.28 16 11 C -0.10 -3.17 4.50 30.60 0.14 -3.03 16 12 C -0.11 -2.46 5.70 29.85 0.17 -2.29 16 13 C 0.52 14.04 7.97 87.66 0.70 14.74 16 14 O -0.58 -22.37 16.39 14.36 0.24 -22.13 16 15 N -0.59 -11.79 6.37 -173.53 -1.11 -12.90 16 16 O -0.17 -4.15 10.75 -21.38 -0.23 -4.38 16 17 C 0.06 0.85 2.74 30.59 0.08 0.93 16 18 C -0.14 -1.78 5.57 30.59 0.17 -1.61 16 19 C -0.11 -0.93 5.92 30.60 0.18 -0.75 16 20 C -0.12 -0.97 5.92 30.60 0.18 -0.78 16 21 C -0.11 -0.88 5.92 30.58 0.18 -0.70 16 22 C -0.11 -1.48 5.57 30.58 0.17 -1.31 16 23 H 0.27 15.76 8.31 -92.70 -0.77 14.99 16 24 H 0.01 0.65 7.20 -2.39 -0.02 0.64 16 25 H 0.01 0.59 7.57 -2.39 -0.02 0.57 16 26 H 0.06 2.18 8.14 -2.39 -0.02 2.17 16 27 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 29 H 0.05 1.82 8.10 -2.38 -0.02 1.80 16 30 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.43 4.62 8.43 -92.71 -0.78 3.84 16 33 H 0.09 0.96 7.94 -2.39 -0.02 0.94 16 34 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 43 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -78.49 347.47 4.17 -74.32 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: 0.12 Total: 6.15 kcal Atomic # 6 Polarization: -31.89 SS G_CDS: 2.96 Total: -28.92 kcal Atomic # 7 Polarization: -72.25 SS G_CDS: -0.81 Total: -73.05 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: 0.01 Total: -26.52 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.88 Total: 48.02 kcal Total: -78.49 4.17 -74.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805199741.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.823 kcal (2) G-P(sol) polarization free energy of solvation -78.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds