Wall clock time and date at job start Mon Mar 30 2020 01:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00206 * 2 1 4 4 H 1.48504 * 109.46875 * 239.99735 * 3 2 1 5 5 H 1.48493 * 109.47096 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47101 * 119.99965 * 3 2 1 7 7 C 1.37880 * 119.99951 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00267 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99960 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47072 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46844 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47193 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47410 * 180.02562 * 12 11 10 14 14 O 1.21279 * 119.99829 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00075 * 180.02562 * 13 12 11 16 16 C 1.46498 * 119.99962 * 179.97438 * 15 13 12 17 17 H 1.09002 * 109.47421 * 325.00245 * 16 15 13 18 18 C 1.53000 * 109.47465 * 204.99918 * 16 15 13 19 19 C 1.52997 * 109.47060 * 65.00143 * 18 16 15 20 20 O 1.42895 * 109.47503 * 180.02562 * 19 18 16 21 21 C 1.53006 * 109.47107 * 85.00055 * 16 15 13 22 22 C 1.52995 * 117.49555 * 8.74662 * 21 16 15 23 23 C 1.52995 * 117.49792 * 300.08902 * 21 16 15 24 24 H 0.96997 * 119.99680 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47142 * 59.99404 * 9 7 2 26 26 H 1.09001 * 109.46849 * 299.99796 * 9 7 2 27 27 H 1.08997 * 109.46902 * 60.00185 * 10 9 7 28 28 H 1.08993 * 109.47130 * 299.99796 * 10 9 7 29 29 H 1.08997 * 109.46960 * 60.00005 * 11 10 9 30 30 H 1.09001 * 109.47260 * 300.00257 * 11 10 9 31 31 H 1.09001 * 109.46875 * 59.99710 * 12 11 10 32 32 H 1.09001 * 109.47248 * 300.00289 * 12 11 10 33 33 H 0.96998 * 120.00379 * 359.97438 * 15 13 12 34 34 H 1.09002 * 109.47398 * 185.00312 * 18 16 15 35 35 H 1.09001 * 109.47194 * 305.00492 * 18 16 15 36 36 H 1.09002 * 109.47153 * 300.00319 * 19 18 16 37 37 H 1.08998 * 109.47533 * 59.99948 * 19 18 16 38 38 H 0.96698 * 114.00355 * 180.02562 * 20 19 18 39 39 H 1.08997 * 115.54853 * 154.41388 * 21 16 15 40 40 H 1.08998 * 117.49984 * 359.97438 * 22 21 16 41 41 H 1.09006 * 117.49830 * 145.02021 * 22 21 16 42 42 H 1.09000 * 117.49832 * 214.98051 * 23 21 16 43 43 H 1.09001 * 117.49910 * 359.97438 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 6 2.4743 -6.1501 0.0005 13 6 1.7208 -7.4552 0.0005 14 8 0.5080 -7.4551 0.0015 15 7 2.3946 -8.6224 0.0005 16 6 1.6621 -9.8911 0.0011 17 1 0.7516 -9.7847 0.5908 18 6 2.5394 -10.9864 0.6106 19 6 2.8008 -10.6693 2.0844 20 8 3.6206 -11.6919 2.6536 21 6 1.2976 -10.2702 -1.4357 22 6 1.9059 -9.4335 -2.5630 23 6 0.4199 -9.2949 -2.2227 24 1 -0.4849 0.8400 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 2.8718 -3.6044 0.8905 28 1 2.8718 -3.6044 -0.8894 29 1 0.8532 -5.0451 -0.8886 30 1 0.8537 -5.0446 0.8914 31 1 3.1016 -6.0923 0.8901 32 1 3.1004 -6.0925 -0.8899 33 1 3.3646 -8.6225 0.0002 34 1 2.0300 -11.9467 0.5303 35 1 3.4877 -11.0323 0.0752 36 1 3.3102 -9.7090 2.1646 37 1 1.8525 -10.6233 2.6199 38 1 3.8268 -11.5559 3.5885 39 1 1.1563 -11.3352 -1.6194 40 1 2.5653 -8.6126 -2.2810 41 1 2.1643 -9.9480 -3.4886 42 1 -0.2987 -9.7184 -2.9244 43 1 0.1018 -8.3834 -1.7167 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807083069.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:47 Heat of formation + Delta-G solvation = -93.249835 kcal Electronic energy + Delta-G solvation = -20461.518705 eV Core-core repulsion = 17313.459931 eV Total energy + Delta-G solvation = -3148.058774 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.40956 -37.84611 -37.00024 -34.88109 -34.40975 -32.65172 -31.75241 -29.60845 -26.69505 -25.38800 -22.59884 -22.57828 -21.90046 -20.56193 -20.11583 -19.96343 -17.87238 -16.86420 -16.51483 -16.23831 -16.11544 -15.25418 -15.19257 -14.72540 -14.43546 -13.96906 -13.68938 -13.25933 -12.85240 -12.51739 -12.21827 -12.11633 -12.07731 -11.68632 -11.67641 -11.51705 -11.35202 -10.95956 -10.53802 -10.52127 -10.47276 -10.40887 -10.35923 -10.12541 -9.77182 -9.61010 -9.22274 -9.11722 -8.98529 -8.29928 -5.94843 -3.97471 2.66918 3.05512 3.35417 3.39843 3.42043 3.59326 3.82905 4.49107 4.56119 4.62693 4.65237 4.83230 4.89388 4.90187 5.03459 5.23371 5.26991 5.33210 5.35027 5.36385 5.40511 5.58153 5.60508 5.75881 5.82500 5.86775 6.01066 6.13273 6.27432 6.30000 6.37729 6.54854 6.83814 7.01789 7.20124 7.21734 7.41320 7.74123 7.90396 8.06507 8.24754 8.48238 9.10082 9.66111 11.16466 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.027267 B = 0.002993 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.643722 B = 9351.705182 C = 9954.798830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.102 4.102 12 C -0.140 4.140 13 C 0.513 3.487 14 O -0.529 6.529 15 N -0.734 5.734 16 C 0.178 3.822 17 H 0.093 0.907 18 C -0.122 4.122 19 C 0.074 3.926 20 O -0.577 6.577 21 C -0.172 4.172 22 C -0.175 4.175 23 C -0.182 4.182 24 H 0.261 0.739 25 H 0.016 0.984 26 H 0.015 0.985 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.400 0.600 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.049 0.951 37 H 0.047 0.953 38 H 0.381 0.619 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.000 -24.079 0.878 25.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.140 4.140 12 C -0.180 4.180 13 C 0.301 3.699 14 O -0.404 6.404 15 N -0.387 5.387 16 C 0.073 3.927 17 H 0.111 0.889 18 C -0.160 4.160 19 C -0.004 4.004 20 O -0.383 6.383 21 C -0.191 4.191 22 C -0.212 4.212 23 C -0.219 4.219 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.234 0.766 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.228 0.772 39 H 0.125 0.875 40 H 0.113 0.887 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.906 -24.186 0.277 24.899 hybrid contribution 0.969 1.107 0.480 1.547 sum 6.875 -23.080 0.758 24.094 Atomic orbital electron populations 1.69965 1.06048 1.26626 1.50842 1.25041 0.94840 0.99213 0.95447 0.86672 0.79581 0.83262 0.78549 1.20280 1.21312 1.20289 1.21253 0.92941 0.91234 1.50544 0.92823 1.19085 0.94039 0.91248 0.97284 1.21649 0.99080 0.94051 1.00027 1.21443 0.96985 0.92682 1.02932 1.21812 1.00135 0.92127 1.03933 1.21092 0.88543 0.85576 0.74691 1.90648 1.14146 1.87534 1.48119 1.46253 1.10165 1.05494 1.76785 1.20337 0.95522 0.82475 0.94389 0.88911 1.21739 1.01043 0.98997 0.94223 1.22189 0.93870 0.90236 0.94068 1.86439 1.72337 1.49673 1.29826 1.22699 1.06623 0.97436 0.92362 1.22922 0.97176 1.02727 0.98419 1.23372 0.93088 1.02702 1.02737 0.92981 0.96609 0.96622 0.93536 0.93501 0.91803 0.91822 0.89224 0.89205 0.76593 0.89718 0.90486 0.93297 0.93451 0.77189 0.87456 0.88732 0.89326 0.89417 0.86175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.57 13.29 55.43 0.74 -26.83 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 11 C -0.10 -1.79 4.50 -26.73 -0.12 -1.91 16 12 C -0.14 -1.77 5.70 -27.88 -0.16 -1.93 16 13 C 0.51 6.53 6.66 -10.99 -0.07 6.45 16 14 O -0.53 -8.76 13.01 5.56 0.07 -8.69 16 15 N -0.73 -6.66 3.07 -53.81 -0.17 -6.83 16 16 C 0.18 1.59 2.43 -67.93 -0.17 1.42 16 17 H 0.09 1.01 7.58 -51.93 -0.39 0.61 16 18 C -0.12 -0.88 5.11 -26.73 -0.14 -1.02 16 19 C 0.07 0.54 6.93 37.16 0.26 0.80 16 20 O -0.58 -4.48 13.66 -35.23 -0.48 -4.96 16 21 C -0.17 -1.59 5.71 -90.62 -0.52 -2.11 16 22 C -0.18 -1.71 9.74 -26.70 -0.26 -1.97 16 23 C -0.18 -2.09 9.82 -26.70 -0.26 -2.35 16 24 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 1.20 8.10 -51.93 -0.42 0.77 16 30 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.40 2.68 8.60 -40.82 -0.35 2.33 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.05 0.34 7.75 -51.93 -0.40 -0.07 16 37 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.38 1.39 9.12 45.56 0.42 1.80 16 39 H 0.11 0.85 8.11 -51.93 -0.42 0.43 16 40 H 0.09 0.95 6.67 -51.93 -0.35 0.60 16 41 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.12 1.74 5.02 -51.93 -0.26 1.48 16 LS Contribution 349.85 15.07 5.27 5.27 Total: -1.00 -33.96 349.85 -8.50 -42.46 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -6.79 Total: 1.13 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -2.12 Total: -18.44 kcal Atomic # 7 Polarization: -34.23 SS G_CDS: 0.57 Total: -33.66 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.41 Total: -13.65 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.96 -8.50 -42.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807083069.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.792 kcal (2) G-P(sol) polarization free energy of solvation -33.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds