Wall clock time and date at job start Mon Mar 30 2020 01:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00206 * 2 1 4 4 H 1.48504 * 109.46875 * 239.99735 * 3 2 1 5 5 H 1.48493 * 109.47096 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47101 * 119.99965 * 3 2 1 7 7 C 1.37880 * 119.99951 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00267 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99960 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47072 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46844 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47193 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47410 * 180.02562 * 12 11 10 14 14 O 1.21279 * 119.99829 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00075 * 180.02562 * 13 12 11 16 16 C 1.46498 * 119.99962 * 179.97438 * 15 13 12 17 17 H 1.09002 * 109.47421 * 325.00245 * 16 15 13 18 18 C 1.53000 * 109.47465 * 204.99918 * 16 15 13 19 19 C 1.52997 * 109.47060 * 65.00143 * 18 16 15 20 20 O 1.42895 * 109.47503 * 180.02562 * 19 18 16 21 21 C 1.53006 * 109.47107 * 85.00055 * 16 15 13 22 22 C 1.52995 * 117.49555 * 8.74662 * 21 16 15 23 23 C 1.52995 * 117.49792 * 300.08902 * 21 16 15 24 24 H 0.96997 * 119.99680 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47142 * 59.99404 * 9 7 2 26 26 H 1.09001 * 109.46849 * 299.99796 * 9 7 2 27 27 H 1.08997 * 109.46902 * 60.00185 * 10 9 7 28 28 H 1.08993 * 109.47130 * 299.99796 * 10 9 7 29 29 H 1.08997 * 109.46960 * 60.00005 * 11 10 9 30 30 H 1.09001 * 109.47260 * 300.00257 * 11 10 9 31 31 H 1.09001 * 109.46875 * 59.99710 * 12 11 10 32 32 H 1.09001 * 109.47248 * 300.00289 * 12 11 10 33 33 H 0.96998 * 120.00379 * 359.97438 * 15 13 12 34 34 H 1.09002 * 109.47398 * 185.00312 * 18 16 15 35 35 H 1.09001 * 109.47194 * 305.00492 * 18 16 15 36 36 H 1.09002 * 109.47153 * 300.00319 * 19 18 16 37 37 H 1.08998 * 109.47533 * 59.99948 * 19 18 16 38 38 H 0.96698 * 114.00355 * 180.02562 * 20 19 18 39 39 H 1.08997 * 115.54853 * 154.41388 * 21 16 15 40 40 H 1.08998 * 117.49984 * 359.97438 * 22 21 16 41 41 H 1.09006 * 117.49830 * 145.02021 * 22 21 16 42 42 H 1.09000 * 117.49832 * 214.98051 * 23 21 16 43 43 H 1.09001 * 117.49910 * 359.97438 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 6 2.4743 -6.1501 0.0005 13 6 1.7208 -7.4552 0.0005 14 8 0.5080 -7.4551 0.0015 15 7 2.3946 -8.6224 0.0005 16 6 1.6621 -9.8911 0.0011 17 1 0.7516 -9.7847 0.5908 18 6 2.5394 -10.9864 0.6106 19 6 2.8008 -10.6693 2.0844 20 8 3.6206 -11.6919 2.6536 21 6 1.2976 -10.2702 -1.4357 22 6 1.9059 -9.4335 -2.5630 23 6 0.4199 -9.2949 -2.2227 24 1 -0.4849 0.8400 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 2.8718 -3.6044 0.8905 28 1 2.8718 -3.6044 -0.8894 29 1 0.8532 -5.0451 -0.8886 30 1 0.8537 -5.0446 0.8914 31 1 3.1016 -6.0923 0.8901 32 1 3.1004 -6.0925 -0.8899 33 1 3.3646 -8.6225 0.0002 34 1 2.0300 -11.9467 0.5303 35 1 3.4877 -11.0323 0.0752 36 1 3.3102 -9.7090 2.1646 37 1 1.8525 -10.6233 2.6199 38 1 3.8268 -11.5559 3.5885 39 1 1.1563 -11.3352 -1.6194 40 1 2.5653 -8.6126 -2.2810 41 1 2.1643 -9.9480 -3.4886 42 1 -0.2987 -9.7184 -2.9244 43 1 0.1018 -8.3834 -1.7167 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807083069.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:46 Heat of formation + Delta-G solvation = -116.630378 kcal Electronic energy + Delta-G solvation = -20462.532562 eV Core-core repulsion = 17313.459931 eV Total energy + Delta-G solvation = -3149.072631 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.33698 -38.69981 -37.65034 -36.57780 -35.23960 -34.59172 -32.65904 -31.21691 -27.83596 -26.80071 -24.25364 -23.36898 -22.59096 -21.93859 -21.34983 -20.96145 -18.49197 -18.41288 -17.81374 -17.40740 -16.99380 -16.49501 -16.38516 -15.88841 -15.55837 -15.03281 -14.76157 -14.53478 -14.20378 -13.65539 -13.60604 -13.48006 -13.15215 -12.86411 -12.79107 -12.73494 -12.41993 -12.35293 -12.14891 -12.09202 -11.97997 -11.36896 -11.35834 -11.27607 -11.13577 -10.91235 -10.89637 -10.65629 -10.54408 -9.99887 -8.18628 -6.30996 1.40253 1.44281 1.52170 1.67805 2.19291 2.42173 2.87866 3.13966 3.18694 3.85168 3.87627 4.00629 4.03082 4.07738 4.13664 4.15951 4.18383 4.41292 4.54880 4.59898 4.68149 4.70113 4.72268 4.82174 4.86312 4.88571 4.98170 5.05938 5.15564 5.20319 5.24573 5.33648 5.35897 5.39339 5.55151 5.59617 5.78471 5.88274 6.25419 6.59748 6.86246 6.87495 7.33224 7.38694 8.93442 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.027267 B = 0.002993 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.643722 B = 9351.705182 C = 9954.798830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.006 4.006 3 Si 0.969 3.031 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.066 0.934 9 C 0.020 3.980 10 C -0.096 4.096 11 C -0.094 4.094 12 C -0.131 4.131 13 C 0.514 3.486 14 O -0.574 6.574 15 N -0.713 5.713 16 C 0.180 3.820 17 H 0.071 0.929 18 C -0.112 4.112 19 C 0.074 3.926 20 O -0.592 6.592 21 C -0.159 4.159 22 C -0.166 4.166 23 C -0.209 4.209 24 H 0.263 0.737 25 H -0.017 1.017 26 H -0.016 1.016 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.041 0.959 30 H 0.043 0.957 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.416 0.584 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.054 0.946 37 H 0.043 0.957 38 H 0.398 0.602 39 H 0.127 0.873 40 H 0.093 0.907 41 H 0.104 0.896 42 H 0.092 0.908 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.034 -24.998 0.876 26.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.204 4.204 3 Si 0.793 3.207 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.084 0.916 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.132 4.132 12 C -0.170 4.170 13 C 0.302 3.698 14 O -0.453 6.453 15 N -0.367 5.367 16 C 0.075 3.925 17 H 0.089 0.911 18 C -0.150 4.150 19 C -0.004 4.004 20 O -0.401 6.401 21 C -0.178 4.178 22 C -0.203 4.203 23 C -0.246 4.246 24 H 0.072 0.928 25 H 0.002 0.998 26 H 0.003 0.997 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.253 0.747 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.247 0.753 39 H 0.145 0.855 40 H 0.111 0.889 41 H 0.122 0.878 42 H 0.110 0.890 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.997 -25.141 0.290 26.704 hybrid contribution -0.029 1.358 0.498 1.446 sum 8.968 -23.783 0.787 25.430 Atomic orbital electron populations 1.70127 1.08080 1.27826 1.51818 1.26095 0.95777 1.03739 0.94757 0.85442 0.78186 0.77702 0.79364 1.18911 1.21072 1.18866 1.21742 0.93750 0.92276 1.50372 0.91584 1.19044 0.94668 0.93793 0.94243 1.21448 0.97808 0.92873 1.01221 1.21221 0.97455 0.93587 1.00966 1.21683 0.98976 0.89851 1.06505 1.21071 0.87885 0.86525 0.74320 1.90656 1.16149 1.88128 1.50408 1.46029 1.10918 1.04604 1.75117 1.20320 0.95225 0.82729 0.94217 0.91057 1.21640 1.00980 0.98163 0.94228 1.22174 0.93785 0.90447 0.94002 1.86389 1.72300 1.49931 1.31449 1.22793 1.04826 0.98018 0.92184 1.22983 0.95437 1.02683 0.99229 1.23273 0.94602 1.02571 1.04178 0.92842 0.99815 0.99745 0.92115 0.92205 0.93984 0.93836 0.86457 0.86688 0.74664 0.89237 0.89473 0.92742 0.93913 0.75266 0.85535 0.88876 0.87775 0.89000 0.89378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.27 13.29 21.45 0.28 -58.98 16 2 C -0.01 -0.38 5.46 84.66 0.46 0.08 16 3 Si 0.97 44.81 29.54 68.60 2.03 46.84 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 6 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 7 C -0.54 -31.61 9.11 25.60 0.23 -31.37 16 8 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 9 C 0.02 1.08 4.97 29.85 0.15 1.23 16 10 C -0.10 -3.90 5.15 30.59 0.16 -3.74 16 11 C -0.09 -3.34 4.50 30.60 0.14 -3.20 16 12 C -0.13 -3.06 5.70 29.85 0.17 -2.89 16 13 C 0.51 12.70 6.66 87.66 0.58 13.29 16 14 O -0.57 -19.73 13.01 -3.03 -0.04 -19.77 16 15 N -0.71 -11.64 3.07 -442.53 -1.36 -12.99 16 16 C 0.18 2.97 2.43 44.99 0.11 3.08 16 17 H 0.07 1.54 7.58 -2.39 -0.02 1.53 16 18 C -0.11 -1.35 5.11 30.59 0.16 -1.20 16 19 C 0.07 0.92 6.93 71.98 0.50 1.42 16 20 O -0.59 -7.85 13.66 -148.98 -2.03 -9.89 16 21 C -0.16 -2.70 5.71 -10.79 -0.06 -2.77 16 22 C -0.17 -2.95 9.74 30.61 0.30 -2.65 16 23 C -0.21 -4.82 9.82 30.61 0.30 -4.52 16 24 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 25 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 26 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 27 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.04 1.65 8.10 -2.39 -0.02 1.63 16 30 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 31 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.42 4.24 8.60 -92.71 -0.80 3.44 16 34 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.05 0.61 7.75 -2.39 -0.02 0.59 16 37 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.40 2.07 9.12 -74.06 -0.68 1.40 16 39 H 0.13 1.69 8.11 -2.39 -0.02 1.67 16 40 H 0.09 1.67 6.67 -2.39 -0.02 1.65 16 41 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 42 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.09 2.69 5.02 -2.39 -0.01 2.68 16 Total: -1.00 -76.29 349.85 1.59 -74.70 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -0.48 Total: 13.34 kcal Atomic # 6 Polarization: -36.44 SS G_CDS: 3.20 Total: -33.24 kcal Atomic # 7 Polarization: -70.90 SS G_CDS: -1.07 Total: -71.97 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -2.07 Total: -29.66 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -76.29 1.59 -74.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807083069.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.934 kcal (2) G-P(sol) polarization free energy of solvation -76.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds