Wall clock time and date at job start Mon Mar 30 2020 01:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99747 * 2 1 4 4 H 1.48497 * 109.47470 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47437 * 300.00854 * 3 2 1 6 6 H 1.48503 * 109.46954 * 60.00435 * 3 2 1 7 7 C 1.37878 * 120.00420 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99670 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99660 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46921 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47164 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46987 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.46915 * 179.97438 * 12 11 10 14 14 O 1.21280 * 120.00009 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99889 * 180.02562 * 13 12 11 16 16 C 1.46505 * 120.00190 * 180.02562 * 15 13 12 17 17 H 1.08999 * 109.46653 * 34.99978 * 16 15 13 18 18 C 1.52995 * 109.47041 * 155.00108 * 16 15 13 19 19 C 1.52994 * 109.47284 * 294.99712 * 18 16 15 20 20 O 1.42902 * 109.47491 * 179.97438 * 19 18 16 21 21 C 1.53003 * 109.46936 * 275.00149 * 16 15 13 22 22 C 1.53001 * 117.51964 * 356.28241 * 21 16 15 23 23 C 1.52999 * 60.00190 * 107.47982 * 22 21 16 24 24 H 0.96998 * 120.00530 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47532 * 60.00763 * 9 7 2 26 26 H 1.09000 * 109.47380 * 300.00110 * 9 7 2 27 27 H 1.08998 * 109.47395 * 59.99875 * 10 9 7 28 28 H 1.09007 * 109.47526 * 299.99845 * 10 9 7 29 29 H 1.08998 * 109.47502 * 60.00316 * 11 10 9 30 30 H 1.09000 * 109.47166 * 299.99813 * 11 10 9 31 31 H 1.08999 * 109.46921 * 60.00352 * 12 11 10 32 32 H 1.09000 * 109.47223 * 300.00034 * 12 11 10 33 33 H 0.97005 * 120.00049 * 0.02562 * 15 13 12 34 34 H 1.09005 * 109.47332 * 55.00017 * 18 16 15 35 35 H 1.09007 * 109.46933 * 174.99834 * 18 16 15 36 36 H 1.09001 * 109.47648 * 300.00214 * 19 18 16 37 37 H 1.08998 * 109.46992 * 60.00421 * 19 18 16 38 38 H 0.96696 * 114.00114 * 179.97438 * 20 19 18 39 39 H 1.09002 * 115.54973 * 210.58024 * 21 16 15 40 40 H 1.09001 * 117.49733 * 214.97413 * 22 21 16 41 41 H 1.08995 * 117.49577 * 359.97438 * 22 21 16 42 42 H 1.09004 * 117.50150 * 252.51496 * 23 22 21 43 43 H 1.09004 * 117.49681 * 107.48417 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6619 -0.0005 11 6 1.4806 -4.9870 -0.0012 12 6 2.4749 -6.1499 -0.0018 13 6 1.7215 -7.4550 -0.0018 14 8 0.5087 -7.4551 -0.0018 15 7 2.3954 -8.6222 -0.0018 16 6 1.6630 -9.8910 -0.0024 17 1 0.7526 -9.7846 -0.5922 18 6 2.5406 -10.9861 -0.6119 19 6 2.8019 -10.6690 -2.0856 20 8 3.6220 -11.6915 -2.6548 21 6 1.2986 -10.2701 1.4344 22 6 1.8101 -9.3639 2.5561 23 6 0.3266 -9.3548 2.1817 24 1 -0.4851 0.8400 0.0004 25 1 0.6243 -2.5567 -0.8903 26 1 0.6248 -2.5570 0.8897 27 1 2.8722 -3.6042 0.8894 28 1 2.8722 -3.6042 -0.8906 29 1 0.8542 -5.0446 -0.8914 30 1 0.8536 -5.0450 0.8886 31 1 3.1016 -6.0925 0.8882 32 1 3.1016 -6.0916 -0.8918 33 1 3.3655 -8.6221 -0.0014 34 1 3.4889 -11.0319 -0.0764 35 1 2.0312 -11.9465 -0.5316 36 1 1.8536 -10.6232 -2.6212 37 1 3.3112 -9.7087 -2.1659 38 1 3.8282 -11.5555 -3.5897 39 1 1.2406 -11.3394 1.6382 40 1 2.0887 -9.8370 3.4977 41 1 2.4067 -8.4976 2.2705 42 1 -0.0529 -8.4823 1.6498 43 1 -0.3708 -9.8219 2.8771 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807083070.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:49 Heat of formation + Delta-G solvation = -93.674514 kcal Electronic energy + Delta-G solvation = -20459.906854 eV Core-core repulsion = 17311.829664 eV Total energy + Delta-G solvation = -3148.077190 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.39697 -37.84059 -37.00003 -34.88166 -34.41964 -32.65343 -31.75422 -29.60834 -26.69396 -25.38744 -22.59476 -22.54690 -21.90641 -20.56275 -20.14644 -19.96426 -17.87257 -16.85441 -16.49262 -16.23230 -16.11716 -15.25790 -15.18814 -14.74750 -14.42981 -13.95831 -13.68465 -13.27776 -12.83486 -12.51500 -12.21096 -12.10771 -12.07160 -11.69637 -11.67526 -11.51428 -11.36120 -10.98955 -10.53591 -10.48931 -10.45822 -10.41363 -10.35900 -10.14078 -9.76034 -9.61487 -9.22323 -9.12130 -8.96729 -8.30680 -5.95251 -3.97722 2.67601 3.05172 3.33073 3.40324 3.44245 3.60796 3.82330 4.48994 4.56122 4.62723 4.64353 4.83662 4.89366 4.90949 5.03441 5.23530 5.27387 5.33390 5.34701 5.36483 5.40325 5.58137 5.61210 5.75709 5.82496 5.86556 6.02047 6.13310 6.27580 6.30126 6.37942 6.54884 6.83803 7.01821 7.20073 7.21680 7.41816 7.74488 7.90218 8.06234 8.25370 8.48145 9.10281 9.66027 11.16097 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.027189 B = 0.002996 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.575536 B = 9344.341381 C = 9958.264532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.102 4.102 12 C -0.140 4.140 13 C 0.513 3.487 14 O -0.529 6.529 15 N -0.734 5.734 16 C 0.178 3.822 17 H 0.093 0.907 18 C -0.122 4.122 19 C 0.074 3.926 20 O -0.577 6.577 21 C -0.173 4.173 22 C -0.174 4.174 23 C -0.181 4.181 24 H 0.259 0.741 25 H 0.015 0.985 26 H 0.016 0.984 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.400 0.600 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.047 0.953 37 H 0.049 0.951 38 H 0.381 0.619 39 H 0.107 0.893 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.120 0.880 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.964 -24.115 -0.887 25.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.140 4.140 12 C -0.180 4.180 13 C 0.301 3.699 14 O -0.405 6.405 15 N -0.387 5.387 16 C 0.073 3.927 17 H 0.111 0.889 18 C -0.160 4.160 19 C -0.004 4.004 20 O -0.383 6.383 21 C -0.192 4.192 22 C -0.211 4.211 23 C -0.218 4.218 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.234 0.766 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.228 0.772 39 H 0.125 0.875 40 H 0.107 0.893 41 H 0.113 0.887 42 H 0.138 0.862 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.879 -24.226 -0.286 24.931 hybrid contribution 0.949 1.120 -0.480 1.545 sum 6.829 -23.106 -0.766 24.106 Atomic orbital electron populations 1.69983 1.06044 1.26398 1.51041 1.25045 0.94838 0.99239 0.95475 0.86562 0.80088 0.83942 0.77550 1.19776 1.21058 1.21045 1.21322 0.93013 0.91205 1.50253 0.92719 1.19094 0.94052 0.91286 0.97293 1.21651 0.99073 0.94049 1.00030 1.21443 0.96982 0.92683 1.02928 1.21813 1.00130 0.92132 1.03927 1.21091 0.88539 0.85574 0.74718 1.90644 1.14147 1.87523 1.48164 1.46263 1.10166 1.05480 1.76796 1.20342 0.95520 0.82487 0.94370 0.88932 1.21746 1.01032 0.98989 0.94241 1.22190 0.93869 0.90240 0.94065 1.86440 1.72325 1.49686 1.29828 1.22714 1.06513 0.97280 0.92692 1.22912 0.98018 1.02045 0.98172 1.23341 0.92383 1.03117 1.02960 0.93099 0.96614 0.96600 0.93502 0.93538 0.91835 0.91796 0.89217 0.89228 0.76595 0.90484 0.89713 0.93447 0.93292 0.77189 0.87471 0.89325 0.88718 0.86200 0.89426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.54 13.29 55.43 0.74 -26.80 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.52 4.97 -27.89 -0.14 0.39 16 10 C -0.11 -2.26 5.15 -26.73 -0.14 -2.39 16 11 C -0.10 -1.79 4.50 -26.73 -0.12 -1.91 16 12 C -0.14 -1.77 5.70 -27.88 -0.16 -1.93 16 13 C 0.51 6.52 6.52 -10.99 -0.07 6.45 16 14 O -0.53 -8.76 12.96 5.56 0.07 -8.69 16 15 N -0.73 -6.67 3.19 -53.80 -0.17 -6.84 16 16 C 0.18 1.59 2.41 -67.93 -0.16 1.42 16 17 H 0.09 1.00 7.58 -51.93 -0.39 0.61 16 18 C -0.12 -0.88 5.08 -26.74 -0.14 -1.02 16 19 C 0.07 0.54 6.93 37.15 0.26 0.80 16 20 O -0.58 -4.48 13.66 -35.23 -0.48 -4.96 16 21 C -0.17 -1.60 5.73 -90.61 -0.52 -2.12 16 22 C -0.17 -1.73 9.68 -26.73 -0.26 -1.99 16 23 C -0.18 -2.07 9.85 -26.73 -0.26 -2.33 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 29 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 30 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 31 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.40 2.69 8.60 -40.82 -0.35 2.34 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 36 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.05 0.34 7.75 -51.93 -0.40 -0.07 16 38 H 0.38 1.39 9.12 45.56 0.42 1.80 16 39 H 0.11 0.85 8.08 -51.93 -0.42 0.43 16 40 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 0.99 6.41 -51.93 -0.33 0.65 16 42 H 0.12 1.73 5.25 -51.93 -0.27 1.46 16 43 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 349.66 15.07 5.27 5.27 Total: -1.00 -33.97 349.66 -8.51 -42.48 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.79 Total: 1.08 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: -2.12 Total: -18.42 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: 0.56 Total: -33.65 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.41 Total: -13.65 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.97 -8.51 -42.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807083070.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.194 kcal (2) G-P(sol) polarization free energy of solvation -33.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds