Wall clock time and date at job start Mon Mar 30 2020 01:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99747 * 2 1 4 4 H 1.48497 * 109.47470 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47437 * 300.00854 * 3 2 1 6 6 H 1.48503 * 109.46954 * 60.00435 * 3 2 1 7 7 C 1.37878 * 120.00420 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99670 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99660 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46921 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47164 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46987 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.46915 * 179.97438 * 12 11 10 14 14 O 1.21280 * 120.00009 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99889 * 180.02562 * 13 12 11 16 16 C 1.46505 * 120.00190 * 180.02562 * 15 13 12 17 17 H 1.08999 * 109.46653 * 34.99978 * 16 15 13 18 18 C 1.52995 * 109.47041 * 155.00108 * 16 15 13 19 19 C 1.52994 * 109.47284 * 294.99712 * 18 16 15 20 20 O 1.42902 * 109.47491 * 179.97438 * 19 18 16 21 21 C 1.53003 * 109.46936 * 275.00149 * 16 15 13 22 22 C 1.53001 * 117.51964 * 356.28241 * 21 16 15 23 23 C 1.52999 * 60.00190 * 107.47982 * 22 21 16 24 24 H 0.96998 * 120.00530 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47532 * 60.00763 * 9 7 2 26 26 H 1.09000 * 109.47380 * 300.00110 * 9 7 2 27 27 H 1.08998 * 109.47395 * 59.99875 * 10 9 7 28 28 H 1.09007 * 109.47526 * 299.99845 * 10 9 7 29 29 H 1.08998 * 109.47502 * 60.00316 * 11 10 9 30 30 H 1.09000 * 109.47166 * 299.99813 * 11 10 9 31 31 H 1.08999 * 109.46921 * 60.00352 * 12 11 10 32 32 H 1.09000 * 109.47223 * 300.00034 * 12 11 10 33 33 H 0.97005 * 120.00049 * 0.02562 * 15 13 12 34 34 H 1.09005 * 109.47332 * 55.00017 * 18 16 15 35 35 H 1.09007 * 109.46933 * 174.99834 * 18 16 15 36 36 H 1.09001 * 109.47648 * 300.00214 * 19 18 16 37 37 H 1.08998 * 109.46992 * 60.00421 * 19 18 16 38 38 H 0.96696 * 114.00114 * 179.97438 * 20 19 18 39 39 H 1.09002 * 115.54973 * 210.58024 * 21 16 15 40 40 H 1.09001 * 117.49733 * 214.97413 * 22 21 16 41 41 H 1.08995 * 117.49577 * 359.97438 * 22 21 16 42 42 H 1.09004 * 117.50150 * 252.51496 * 23 22 21 43 43 H 1.09004 * 117.49681 * 107.48417 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6619 -0.0005 11 6 1.4806 -4.9870 -0.0012 12 6 2.4749 -6.1499 -0.0018 13 6 1.7215 -7.4550 -0.0018 14 8 0.5087 -7.4551 -0.0018 15 7 2.3954 -8.6222 -0.0018 16 6 1.6630 -9.8910 -0.0024 17 1 0.7526 -9.7846 -0.5922 18 6 2.5406 -10.9861 -0.6119 19 6 2.8019 -10.6690 -2.0856 20 8 3.6220 -11.6915 -2.6548 21 6 1.2986 -10.2701 1.4344 22 6 1.8101 -9.3639 2.5561 23 6 0.3266 -9.3548 2.1817 24 1 -0.4851 0.8400 0.0004 25 1 0.6243 -2.5567 -0.8903 26 1 0.6248 -2.5570 0.8897 27 1 2.8722 -3.6042 0.8894 28 1 2.8722 -3.6042 -0.8906 29 1 0.8542 -5.0446 -0.8914 30 1 0.8536 -5.0450 0.8886 31 1 3.1016 -6.0925 0.8882 32 1 3.1016 -6.0916 -0.8918 33 1 3.3655 -8.6221 -0.0014 34 1 3.4889 -11.0319 -0.0764 35 1 2.0312 -11.9465 -0.5316 36 1 1.8536 -10.6232 -2.6212 37 1 3.3112 -9.7087 -2.1659 38 1 3.8282 -11.5555 -3.5897 39 1 1.2406 -11.3394 1.6382 40 1 2.0887 -9.8370 3.4977 41 1 2.4067 -8.4976 2.2705 42 1 -0.0529 -8.4823 1.6498 43 1 -0.3708 -9.8219 2.8771 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807083070.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:48 Heat of formation + Delta-G solvation = -117.126078 kcal Electronic energy + Delta-G solvation = -20460.923790 eV Core-core repulsion = 17311.829664 eV Total energy + Delta-G solvation = -3149.094126 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.32562 -38.69469 -37.65191 -36.57834 -35.25160 -34.59273 -32.66162 -31.21707 -27.83789 -26.79897 -24.25326 -23.34472 -22.59351 -21.93673 -21.34919 -20.99711 -18.49304 -18.42094 -17.80030 -17.39338 -16.98452 -16.48775 -16.38127 -15.88723 -15.58210 -15.02606 -14.75631 -14.55229 -14.22237 -13.63693 -13.60774 -13.47110 -13.14177 -12.85933 -12.84327 -12.73546 -12.42169 -12.30298 -12.14316 -12.10294 -11.99316 -11.37363 -11.35756 -11.26587 -11.11720 -10.92066 -10.90490 -10.64466 -10.55888 -10.00327 -8.18968 -6.31116 1.40376 1.41212 1.54735 1.68338 2.18881 2.41915 2.89271 3.13816 3.17460 3.85208 3.87575 4.00671 4.03131 4.07742 4.13470 4.15798 4.18093 4.40993 4.55614 4.59789 4.68156 4.70053 4.71907 4.81807 4.86336 4.88599 4.98059 5.05703 5.15167 5.20323 5.24838 5.33616 5.36149 5.39400 5.55312 5.59758 5.78400 5.88283 6.25421 6.60170 6.86193 6.87734 7.33689 7.38650 8.93471 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.027189 B = 0.002996 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.575536 B = 9344.341381 C = 9958.264532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.969 3.031 4 H -0.257 1.257 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.066 0.934 9 C 0.019 3.981 10 C -0.096 4.096 11 C -0.094 4.094 12 C -0.131 4.131 13 C 0.513 3.487 14 O -0.574 6.574 15 N -0.713 5.713 16 C 0.180 3.820 17 H 0.071 0.929 18 C -0.112 4.112 19 C 0.074 3.926 20 O -0.592 6.592 21 C -0.158 4.158 22 C -0.168 4.168 23 C -0.207 4.207 24 H 0.263 0.737 25 H -0.016 1.016 26 H -0.016 1.016 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.043 0.957 30 H 0.041 0.959 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.416 0.584 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.043 0.957 37 H 0.054 0.946 38 H 0.397 0.603 39 H 0.128 0.872 40 H 0.104 0.896 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.969 -25.044 -0.871 26.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.204 4.204 3 Si 0.793 3.207 4 H -0.181 1.181 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.579 4.579 8 H 0.084 0.916 9 C -0.018 4.018 10 C -0.134 4.134 11 C -0.132 4.132 12 C -0.170 4.170 13 C 0.302 3.698 14 O -0.453 6.453 15 N -0.367 5.367 16 C 0.075 3.925 17 H 0.089 0.911 18 C -0.150 4.150 19 C -0.004 4.004 20 O -0.401 6.401 21 C -0.178 4.178 22 C -0.205 4.205 23 C -0.244 4.244 24 H 0.071 0.929 25 H 0.003 0.997 26 H 0.002 0.998 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.253 0.747 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.247 0.753 39 H 0.146 0.854 40 H 0.122 0.878 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.940 -25.190 -0.284 26.731 hybrid contribution -0.041 1.378 -0.503 1.467 sum 8.900 -23.812 -0.787 25.433 Atomic orbital electron populations 1.70136 1.08066 1.27688 1.51970 1.26094 0.95781 1.03743 0.94806 0.85337 0.79218 0.78424 0.77682 1.18062 1.20465 1.20491 1.21788 0.93740 0.92247 1.50096 0.91603 1.19051 0.94677 0.93816 0.94260 1.21450 0.97806 0.92877 1.01221 1.21221 0.97451 0.93584 1.00962 1.21684 0.98973 0.89863 1.06494 1.21072 0.87888 0.86524 0.74350 1.90654 1.16133 1.88115 1.50446 1.46039 1.10920 1.04593 1.75126 1.20327 0.95227 0.82745 0.94207 0.91084 1.21649 1.00978 0.98155 0.94241 1.22174 0.93779 0.90451 0.94007 1.86391 1.72286 1.49941 1.31450 1.22810 1.04460 0.98021 0.92463 1.22965 0.96346 1.02071 0.99117 1.23244 0.93683 1.03158 1.04288 0.92856 0.99726 0.99796 0.92210 0.92122 0.93847 0.93977 0.86702 0.86472 0.74668 0.89452 0.89218 0.93917 0.92743 0.75267 0.85429 0.87759 0.89147 0.89468 0.88819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.19 13.29 21.45 0.28 -58.90 16 2 C -0.01 -0.42 5.46 84.65 0.46 0.04 16 3 Si 0.97 44.85 29.54 68.60 2.03 46.88 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 7 C -0.54 -31.43 9.11 25.60 0.23 -31.19 16 8 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 9 C 0.02 1.05 4.97 29.85 0.15 1.20 16 10 C -0.10 -3.90 5.15 30.59 0.16 -3.74 16 11 C -0.09 -3.33 4.50 30.60 0.14 -3.20 16 12 C -0.13 -3.06 5.70 29.85 0.17 -2.89 16 13 C 0.51 12.70 6.52 87.66 0.57 13.27 16 14 O -0.57 -19.71 12.96 -3.03 -0.04 -19.75 16 15 N -0.71 -11.66 3.19 -442.53 -1.41 -13.07 16 16 C 0.18 2.96 2.41 44.99 0.11 3.07 16 17 H 0.07 1.54 7.58 -2.39 -0.02 1.52 16 18 C -0.11 -1.35 5.08 30.59 0.16 -1.20 16 19 C 0.07 0.92 6.93 71.98 0.50 1.42 16 20 O -0.59 -7.85 13.66 -148.98 -2.04 -9.89 16 21 C -0.16 -2.69 5.73 -10.79 -0.06 -2.75 16 22 C -0.17 -3.06 9.68 30.59 0.30 -2.76 16 23 C -0.21 -4.74 9.85 30.60 0.30 -4.44 16 24 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 25 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 26 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 27 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 29 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 30 H 0.04 1.65 8.10 -2.39 -0.02 1.63 16 31 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.12 2.15 8.14 -2.39 -0.02 2.14 16 33 H 0.42 4.26 8.60 -92.70 -0.80 3.46 16 34 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 36 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.05 0.61 7.75 -2.39 -0.02 0.59 16 38 H 0.40 2.07 9.12 -74.06 -0.68 1.39 16 39 H 0.13 1.67 8.08 -2.39 -0.02 1.65 16 40 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.09 1.72 6.41 -2.39 -0.02 1.70 16 42 H 0.09 2.67 5.25 -2.39 -0.01 2.65 16 43 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 Total: -1.00 -76.26 349.66 1.52 -74.74 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -0.48 Total: 13.16 kcal Atomic # 6 Polarization: -36.35 SS G_CDS: 3.18 Total: -33.17 kcal Atomic # 7 Polarization: -70.84 SS G_CDS: -1.13 Total: -71.97 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -2.07 Total: -29.64 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -76.26 1.52 -74.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807083070.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.385 kcal (2) G-P(sol) polarization free energy of solvation -76.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds