Wall clock time and date at job start Mon Mar 30 2020 00:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99533 * 2 1 4 4 H 1.48497 * 109.47222 * 267.73995 * 3 2 1 5 5 H 1.48504 * 109.47218 * 27.73857 * 3 2 1 6 6 H 1.48498 * 109.47186 * 147.74106 * 3 2 1 7 7 C 1.37877 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99592 * 353.58074 * 7 2 1 9 9 C 1.50703 * 119.99991 * 173.58346 * 7 2 1 10 10 C 1.52999 * 115.54706 * 299.61827 * 9 7 2 11 11 N 1.46496 * 109.47488 * 320.34679 * 10 9 7 12 12 C 1.34777 * 120.00168 * 184.67061 * 11 10 9 13 13 O 1.21281 * 120.00172 * 354.84191 * 12 11 10 14 14 C 1.50700 * 119.99832 * 174.84351 * 12 11 10 15 15 F 1.39903 * 109.47203 * 52.44663 * 14 12 11 16 16 C 1.52997 * 109.47290 * 292.44367 * 14 12 11 17 17 C 1.52997 * 109.47109 * 180.02562 * 16 14 12 18 18 C 1.53004 * 109.47527 * 59.99987 * 17 16 14 19 19 C 1.52997 * 109.46936 * 300.00119 * 18 17 16 20 20 C 1.53004 * 109.47204 * 59.99870 * 19 18 17 21 21 C 1.52996 * 117.49943 * 85.29060 * 9 7 2 22 22 C 1.52996 * 60.03291 * 107.50354 * 21 9 7 23 23 H 0.96995 * 120.00848 * 0.02562 * 1 2 3 24 24 H 1.09007 * 109.47175 * 80.35098 * 10 9 7 25 25 H 1.09007 * 109.46985 * 200.34581 * 10 9 7 26 26 H 0.96998 * 119.99977 * 4.67265 * 11 10 9 27 27 H 1.08997 * 109.47023 * 299.99830 * 16 14 12 28 28 H 1.08994 * 109.47214 * 60.00109 * 16 14 12 29 29 H 1.09000 * 109.47635 * 299.99696 * 17 16 14 30 30 H 1.09007 * 109.47191 * 179.97438 * 17 16 14 31 31 H 1.08997 * 109.47068 * 179.97438 * 18 17 16 32 32 H 1.09001 * 109.46506 * 59.99928 * 18 17 16 33 33 H 1.08997 * 109.47023 * 299.99957 * 19 18 17 34 34 H 1.08994 * 109.47214 * 179.97438 * 19 18 17 35 35 H 1.09002 * 109.46959 * 180.02562 * 20 19 18 36 36 H 1.08994 * 109.47490 * 59.99859 * 20 19 18 37 37 H 1.09004 * 117.49683 * 215.00455 * 21 9 7 38 38 H 1.09002 * 117.50066 * 359.97438 * 21 9 7 39 39 H 1.08997 * 117.50481 * 107.50400 * 22 21 9 40 40 H 1.09001 * 117.49507 * 252.52769 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.5443 2.0189 -1.3989 5 1 1.4232 2.6661 0.6517 6 1 3.5218 1.4546 0.7473 7 6 2.0046 -1.1940 0.0005 8 1 1.4697 -2.1263 0.1055 9 6 3.5046 -1.1980 -0.1453 10 6 4.0432 -0.5862 -1.4401 11 7 3.1811 -0.9741 -2.5592 12 6 3.5143 -0.6275 -3.8183 13 8 4.4761 0.0841 -4.0170 14 6 2.6918 -1.1242 -4.9792 15 9 1.3435 -0.8239 -4.7578 16 6 2.8616 -2.6388 -5.1136 17 6 2.0270 -3.1429 -6.2927 18 6 2.4973 -2.4609 -7.5790 19 6 2.3275 -0.9463 -7.4446 20 6 3.1621 -0.4421 -6.2656 21 6 4.3383 -1.0125 1.1240 22 6 4.2696 -2.3834 0.4484 23 1 -0.4851 0.8399 -0.0004 24 1 4.0561 0.5001 -1.3508 25 1 5.0558 -0.9481 -1.6191 26 1 2.3703 -1.4803 -2.3940 27 1 3.9121 -2.8727 -5.2862 28 1 2.5270 -3.1246 -4.1971 29 1 0.9764 -2.9090 -6.1206 30 1 2.1483 -4.2219 -6.3887 31 1 1.9030 -2.8204 -8.4190 32 1 3.5478 -2.6949 -7.7511 33 1 1.2769 -0.7123 -7.2725 34 1 2.6629 -0.4604 -8.3608 35 1 3.0408 0.6369 -6.1696 36 1 4.2127 -0.6761 -6.4377 37 1 5.2706 -0.4545 1.0367 38 1 3.8019 -0.8870 2.0647 39 1 5.1567 -2.7275 -0.0833 40 1 3.6877 -3.1603 0.9444 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810713107.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:35 Heat of formation + Delta-G solvation = -84.305442 kcal Electronic energy + Delta-G solvation = -21858.640506 eV Core-core repulsion = 18587.509285 eV Total energy + Delta-G solvation = -3271.131222 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -47.61536 -39.36884 -37.52079 -36.80440 -33.50551 -32.25218 -30.91526 -30.65627 -26.91041 -25.37429 -23.26568 -22.73337 -21.60241 -20.14503 -19.52586 -19.17814 -17.46404 -16.44064 -16.10715 -15.65137 -15.09514 -14.84436 -14.73046 -14.33986 -13.97639 -13.45916 -13.41340 -13.22817 -12.92369 -12.52308 -12.29784 -12.25442 -12.24812 -11.98718 -11.75774 -11.09984 -11.09145 -10.75198 -10.71005 -10.63446 -10.56959 -10.28107 -10.06852 -9.63995 -9.35876 -9.11836 -8.90413 -8.54509 -8.26400 -6.23664 -4.26958 2.90135 3.27770 3.36942 3.40799 3.55993 4.34893 4.44611 4.50994 4.67808 4.74699 4.93418 5.04094 5.10821 5.16501 5.28469 5.34069 5.42092 5.56556 5.65073 5.69774 5.89749 5.92294 5.96550 5.99523 6.08566 6.09163 6.15635 6.19752 6.22673 6.38963 6.42053 6.48652 6.63114 6.82204 7.04693 7.13704 7.61821 8.14105 8.35802 8.67770 8.79053 9.39681 10.86555 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023056 B = 0.006354 C = 0.006021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.151368 B = 4405.862785 C = 4649.387575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.090 3.910 3 Si 0.866 3.134 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.254 1.254 7 C -0.497 4.497 8 H 0.080 0.920 9 C -0.018 4.018 10 C 0.148 3.852 11 N -0.684 5.684 12 C 0.489 3.511 13 O -0.549 6.549 14 C 0.111 3.889 15 F -0.189 7.189 16 C -0.137 4.137 17 C -0.119 4.119 18 C -0.121 4.121 19 C -0.121 4.121 20 C -0.122 4.122 21 C -0.190 4.190 22 C -0.180 4.180 23 H 0.267 0.733 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.418 0.582 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.269 -4.974 -11.879 13.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.115 4.115 3 Si 0.693 3.307 4 H -0.200 1.200 5 H -0.219 1.219 6 H -0.178 1.178 7 C -0.534 4.534 8 H 0.098 0.902 9 C -0.019 4.019 10 C 0.025 3.975 11 N -0.335 5.335 12 C 0.272 3.728 13 O -0.428 6.428 14 C 0.090 3.910 15 F -0.170 7.170 16 C -0.175 4.175 17 C -0.156 4.156 18 C -0.159 4.159 19 C -0.159 4.159 20 C -0.160 4.160 21 C -0.228 4.228 22 C -0.217 4.217 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.257 0.743 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.726 -4.371 -11.967 13.968 hybrid contribution -0.088 0.848 0.308 0.907 sum 5.639 -3.523 -11.658 13.421 Atomic orbital electron populations 1.69873 1.06335 1.27504 1.48314 1.24887 0.94461 0.98954 0.93225 0.87069 0.80976 0.83624 0.79018 1.20030 1.21866 1.17775 1.20220 0.86614 0.94716 1.51816 0.90179 1.19608 0.94888 0.98187 0.89202 1.21017 0.91822 0.98675 0.86005 1.46062 1.27456 1.55122 1.04820 1.20771 0.85914 0.81280 0.84831 1.90651 1.29757 1.37133 1.85273 1.21143 0.77615 0.97291 0.94992 1.92918 1.33738 1.94516 1.95810 1.22107 1.02300 0.92238 1.00839 1.21514 1.00426 0.99973 0.93736 1.21579 1.01433 0.95286 0.97553 1.21557 1.00865 0.95809 0.97660 1.21876 1.01158 1.01040 0.91935 1.23042 1.01266 0.99358 0.99115 1.22849 1.01555 0.91869 1.05425 0.92267 0.92805 0.92670 0.74306 0.89832 0.89773 0.90925 0.91185 0.91725 0.91862 0.91202 0.91350 0.90374 0.89492 0.91180 0.89273 0.90855 0.89610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.71 13.96 55.43 0.77 -24.94 16 2 C 0.09 2.45 5.46 -17.82 -0.10 2.35 16 3 Si 0.87 21.56 24.77 -169.99 -4.21 17.35 16 4 H -0.27 -7.06 6.98 56.52 0.39 -6.67 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.25 -5.99 6.16 56.52 0.35 -5.64 16 7 C -0.50 -12.85 7.96 -34.44 -0.27 -13.13 16 8 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 9 C -0.02 -0.39 1.21 -155.62 -0.19 -0.58 16 10 C 0.15 3.21 4.94 -4.04 -0.02 3.19 16 11 N -0.68 -14.24 5.36 -60.29 -0.32 -14.56 16 12 C 0.49 9.68 6.79 -10.99 -0.07 9.60 16 13 O -0.55 -12.07 15.99 5.56 0.09 -11.98 16 14 C 0.11 1.79 1.05 -91.77 -0.10 1.70 16 15 F -0.19 -3.45 15.73 2.25 0.04 -3.41 16 16 C -0.14 -1.78 4.97 -26.73 -0.13 -1.92 16 17 C -0.12 -1.29 5.80 -26.73 -0.16 -1.45 16 18 C -0.12 -1.18 5.92 -26.73 -0.16 -1.34 16 19 C -0.12 -1.35 5.80 -26.73 -0.16 -1.51 16 20 C -0.12 -1.71 4.32 -26.73 -0.12 -1.82 16 21 C -0.19 -3.85 8.62 -26.74 -0.23 -4.08 16 22 C -0.18 -3.44 9.89 -26.70 -0.26 -3.70 16 23 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.05 1.26 5.16 -51.93 -0.27 1.00 16 25 H 0.06 1.10 7.95 -51.93 -0.41 0.69 16 26 H 0.42 8.85 7.33 -40.82 -0.30 8.55 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.07 0.85 7.80 -51.93 -0.41 0.45 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.83 7.80 -51.93 -0.41 0.42 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.09 1.17 8.02 -51.93 -0.42 0.75 16 37 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 39 H 0.07 1.25 8.08 -51.93 -0.42 0.83 16 40 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 LS Contribution 318.71 15.07 4.80 4.80 Total: -1.00 -29.51 318.71 -7.27 -36.78 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -6.47 Total: 8.64 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -1.96 Total: -12.68 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.45 Total: -39.50 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.09 Total: -11.98 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.04 Total: -3.41 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.21 Total: 17.35 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.51 -7.27 -36.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810713107.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.529 kcal (2) G-P(sol) polarization free energy of solvation -29.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds