Wall clock time and date at job start Mon Mar 30 2020 00:44:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86801 * 119.99533 * 2 1
4 4 H 1.48497 * 109.47222 * 267.73995 * 3 2 1
5 5 H 1.48504 * 109.47218 * 27.73857 * 3 2 1
6 6 H 1.48498 * 109.47186 * 147.74106 * 3 2 1
7 7 C 1.37877 * 120.00513 * 179.97438 * 2 1 3
8 8 H 1.07998 * 119.99592 * 353.58074 * 7 2 1
9 9 C 1.50703 * 119.99991 * 173.58346 * 7 2 1
10 10 C 1.52999 * 115.54706 * 299.61827 * 9 7 2
11 11 N 1.46496 * 109.47488 * 320.34679 * 10 9 7
12 12 C 1.34777 * 120.00168 * 184.67061 * 11 10 9
13 13 O 1.21281 * 120.00172 * 354.84191 * 12 11 10
14 14 C 1.50700 * 119.99832 * 174.84351 * 12 11 10
15 15 F 1.39903 * 109.47203 * 52.44663 * 14 12 11
16 16 C 1.52997 * 109.47290 * 292.44367 * 14 12 11
17 17 C 1.52997 * 109.47109 * 180.02562 * 16 14 12
18 18 C 1.53004 * 109.47527 * 59.99987 * 17 16 14
19 19 C 1.52997 * 109.46936 * 300.00119 * 18 17 16
20 20 C 1.53004 * 109.47204 * 59.99870 * 19 18 17
21 21 C 1.52996 * 117.49943 * 85.29060 * 9 7 2
22 22 C 1.52996 * 60.03291 * 107.50354 * 21 9 7
23 23 H 0.96995 * 120.00848 * 0.02562 * 1 2 3
24 24 H 1.09007 * 109.47175 * 80.35098 * 10 9 7
25 25 H 1.09007 * 109.46985 * 200.34581 * 10 9 7
26 26 H 0.96998 * 119.99977 * 4.67265 * 11 10 9
27 27 H 1.08997 * 109.47023 * 299.99830 * 16 14 12
28 28 H 1.08994 * 109.47214 * 60.00109 * 16 14 12
29 29 H 1.09000 * 109.47635 * 299.99696 * 17 16 14
30 30 H 1.09007 * 109.47191 * 179.97438 * 17 16 14
31 31 H 1.08997 * 109.47068 * 179.97438 * 18 17 16
32 32 H 1.09001 * 109.46506 * 59.99928 * 18 17 16
33 33 H 1.08997 * 109.47023 * 299.99957 * 19 18 17
34 34 H 1.08994 * 109.47214 * 179.97438 * 19 18 17
35 35 H 1.09002 * 109.46959 * 180.02562 * 20 19 18
36 36 H 1.08994 * 109.47490 * 59.99859 * 20 19 18
37 37 H 1.09004 * 117.49683 * 215.00455 * 21 9 7
38 38 H 1.09002 * 117.50066 * 359.97438 * 21 9 7
39 39 H 1.08997 * 117.50481 * 107.50400 * 22 21 9
40 40 H 1.09001 * 117.49507 * 252.52769 * 22 21 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2490 1.6178 0.0000
4 1 2.5443 2.0189 -1.3989
5 1 1.4232 2.6661 0.6517
6 1 3.5218 1.4546 0.7473
7 6 2.0046 -1.1940 0.0005
8 1 1.4697 -2.1263 0.1055
9 6 3.5046 -1.1980 -0.1453
10 6 4.0432 -0.5862 -1.4401
11 7 3.1811 -0.9741 -2.5592
12 6 3.5143 -0.6275 -3.8183
13 8 4.4761 0.0841 -4.0170
14 6 2.6918 -1.1242 -4.9792
15 9 1.3435 -0.8239 -4.7578
16 6 2.8616 -2.6388 -5.1136
17 6 2.0270 -3.1429 -6.2927
18 6 2.4973 -2.4609 -7.5790
19 6 2.3275 -0.9463 -7.4446
20 6 3.1621 -0.4421 -6.2656
21 6 4.3383 -1.0125 1.1240
22 6 4.2696 -2.3834 0.4484
23 1 -0.4851 0.8399 -0.0004
24 1 4.0561 0.5001 -1.3508
25 1 5.0558 -0.9481 -1.6191
26 1 2.3703 -1.4803 -2.3940
27 1 3.9121 -2.8727 -5.2862
28 1 2.5270 -3.1246 -4.1971
29 1 0.9764 -2.9090 -6.1206
30 1 2.1483 -4.2219 -6.3887
31 1 1.9030 -2.8204 -8.4190
32 1 3.5478 -2.6949 -7.7511
33 1 1.2769 -0.7123 -7.2725
34 1 2.6629 -0.4604 -8.3608
35 1 3.0408 0.6369 -6.1696
36 1 4.2127 -0.6761 -6.4377
37 1 5.2706 -0.4545 1.0367
38 1 3.8019 -0.8870 2.0647
39 1 5.1567 -2.7275 -0.0833
40 1 3.6877 -3.1603 0.9444
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000810713107.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:44:35
Heat of formation + Delta-G solvation = -102.387702 kcal
Electronic energy + Delta-G solvation = -21859.424612 eV
Core-core repulsion = 18587.509285 eV
Total energy + Delta-G solvation = -3271.915327 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 269.153 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-49.00105 -40.92186 -38.93831 -38.13418 -35.14268 -34.33921 -31.93144 -31.75536
-28.59587 -27.27927 -24.47927 -23.72707 -23.18996 -21.48229 -21.09209 -20.57498
-19.06943 -18.19604 -17.47028 -17.21363 -16.78081 -16.27689 -16.01816 -15.66520
-15.55502 -14.97373 -14.79375 -14.49118 -14.45134 -14.18085 -14.01342 -13.57241
-13.28370 -13.18332 -13.06898 -12.83578 -12.72896 -12.15934 -12.13272 -12.09537
-11.71129 -11.50095 -11.49461 -11.12872 -11.06630 -10.81880 -10.70272 -10.40242
-9.95823 -8.36966 -6.39524 1.25680 1.32358 1.33784 1.39753 2.06328
2.28263 2.91697 3.25487 3.31914 3.39489 3.56174 3.64933 3.97939
4.10307 4.14238 4.25380 4.26877 4.35540 4.41727 4.45505 4.50896
4.60895 4.75956 4.80716 4.91154 4.96002 4.97443 5.03002 5.14987
5.15931 5.19709 5.26958 5.30218 5.43750 5.50392 5.51986 5.65158
6.25957 6.49128 6.69644 7.04379 7.28539 8.76771
Molecular weight = 269.15amu
Principal moments of inertia in cm(-1)
A = 0.023056 B = 0.006354 C = 0.006021
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1214.151368 B = 4405.862785 C = 4649.387575
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.930 5.930
2 C 0.047 3.953
3 Si 0.910 3.090
4 H -0.291 1.291
5 H -0.296 1.296
6 H -0.230 1.230
7 C -0.479 4.479
8 H 0.049 0.951
9 C -0.048 4.048
10 C 0.153 3.847
11 N -0.690 5.690
12 C 0.484 3.516
13 O -0.573 6.573
14 C 0.107 3.893
15 F -0.205 7.205
16 C -0.133 4.133
17 C -0.117 4.117
18 C -0.117 4.117
19 C -0.118 4.118
20 C -0.120 4.120
21 C -0.184 4.184
22 C -0.154 4.154
23 H 0.265 0.735
24 H 0.033 0.967
25 H 0.075 0.925
26 H 0.414 0.586
27 H 0.098 0.902
28 H 0.076 0.924
29 H 0.059 0.941
30 H 0.093 0.907
31 H 0.085 0.915
32 H 0.077 0.923
33 H 0.058 0.942
34 H 0.089 0.911
35 H 0.058 0.942
36 H 0.094 0.906
37 H 0.092 0.908
38 H 0.081 0.919
39 H 0.103 0.897
40 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.245 -6.128 -13.014 16.106
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.568 5.568
2 C -0.153 4.153
3 Si 0.737 3.263
4 H -0.218 1.218
5 H -0.223 1.223
6 H -0.153 1.153
7 C -0.517 4.517
8 H 0.068 0.932
9 C -0.049 4.049
10 C 0.029 3.971
11 N -0.340 5.340
12 C 0.268 3.732
13 O -0.453 6.453
14 C 0.086 3.914
15 F -0.186 7.186
16 C -0.171 4.171
17 C -0.154 4.154
18 C -0.155 4.155
19 C -0.155 4.155
20 C -0.158 4.158
21 C -0.222 4.222
22 C -0.191 4.191
23 H 0.074 0.926
24 H 0.051 0.949
25 H 0.093 0.907
26 H 0.252 0.748
27 H 0.117 0.883
28 H 0.094 0.906
29 H 0.078 0.922
30 H 0.112 0.888
31 H 0.103 0.897
32 H 0.095 0.905
33 H 0.077 0.923
34 H 0.108 0.892
35 H 0.077 0.923
36 H 0.113 0.887
37 H 0.111 0.889
38 H 0.100 0.900
39 H 0.122 0.878
40 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges 7.725 -5.537 -13.090 16.177
hybrid contribution -0.683 1.151 0.679 1.501
sum 7.042 -4.386 -12.411 14.929
Atomic orbital electron populations
1.69978 1.07732 1.27851 1.51265 1.25424 0.94757 1.01410 0.93726
0.86369 0.80959 0.80855 0.78093 1.21834 1.22348 1.15276 1.20324
0.88850 0.93021 1.49471 0.93242 1.19516 0.92886 1.01944 0.90572
1.20956 0.92934 0.97364 0.85857 1.46122 1.27298 1.55253 1.05342
1.21470 0.85919 0.80493 0.85294 1.90624 1.31018 1.38026 1.85662
1.21398 0.76129 0.99712 0.94156 1.92886 1.34963 1.94830 1.95904
1.22148 1.03728 0.89507 1.01734 1.21545 0.99148 1.01455 0.93292
1.21592 1.02682 0.93701 0.97475 1.21572 0.99582 0.97310 0.97048
1.21914 1.02144 0.99781 0.91991 1.23076 1.01305 1.00514 0.97346
1.22918 1.01496 0.90974 1.03679 0.92552 0.94925 0.90665 0.74795
0.88326 0.90569 0.92236 0.88846 0.89660 0.90481 0.92328 0.89226
0.92307 0.88710 0.88915 0.90033 0.87839 0.89614
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -55.69 13.96 21.45 0.30 -55.39 16
2 C 0.05 2.62 5.46 84.66 0.46 3.08 16
3 Si 0.91 44.92 24.77 68.60 1.70 46.62 16
4 H -0.29 -15.08 6.98 99.48 0.69 -14.39 16
5 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16
6 H -0.23 -10.32 6.16 99.48 0.61 -9.71 16
7 C -0.48 -25.00 7.96 25.60 0.20 -24.80 16
8 H 0.05 2.84 8.06 -2.91 -0.02 2.81 16
9 C -0.05 -2.06 1.21 -52.90 -0.06 -2.12 16
10 C 0.15 6.40 4.94 86.38 0.43 6.83 16
11 N -0.69 -28.66 5.36 -463.05 -2.48 -31.14 16
12 C 0.48 19.05 6.79 87.66 0.60 19.64 16
13 O -0.57 -24.97 15.99 -3.03 -0.05 -25.02 16
14 C 0.11 3.42 1.05 -11.54 -0.01 3.41 16
15 F -0.21 -7.61 15.73 44.97 0.71 -6.90 16
16 C -0.13 -3.27 4.97 30.59 0.15 -3.12 16
17 C -0.12 -2.26 5.80 30.59 0.18 -2.08 16
18 C -0.12 -1.90 5.92 30.59 0.18 -1.72 16
19 C -0.12 -2.38 5.80 30.59 0.18 -2.20 16
20 C -0.12 -3.25 4.32 30.60 0.13 -3.12 16
21 C -0.18 -6.97 8.62 30.59 0.26 -6.70 16
22 C -0.15 -5.41 9.89 30.62 0.30 -5.11 16
23 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16
24 H 0.03 1.50 5.16 -2.38 -0.01 1.49 16
25 H 0.08 2.83 7.95 -2.38 -0.02 2.81 16
26 H 0.41 17.82 7.33 -92.71 -0.68 17.14 16
27 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16
28 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16
29 H 0.06 1.31 7.80 -2.39 -0.02 1.30 16
30 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16
31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16
32 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16
33 H 0.06 1.32 7.80 -2.39 -0.02 1.30 16
34 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16
35 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16
36 H 0.09 2.39 8.02 -2.39 -0.02 2.37 16
37 H 0.09 3.11 8.14 -2.38 -0.02 3.09 16
38 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16
39 H 0.10 3.06 8.08 -2.39 -0.02 3.04 16
40 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16
Total: -1.00 -64.55 318.71 3.41 -61.13
By element:
Atomic # 1 Polarization: 28.47 SS G_CDS: 0.24 Total: 28.71 kcal
Atomic # 6 Polarization: -21.01 SS G_CDS: 3.00 Total: -18.01 kcal
Atomic # 7 Polarization: -84.35 SS G_CDS: -2.18 Total: -86.53 kcal
Atomic # 8 Polarization: -24.97 SS G_CDS: -0.05 Total: -25.02 kcal
Atomic # 9 Polarization: -7.61 SS G_CDS: 0.71 Total: -6.90 kcal
Atomic # 14 Polarization: 44.92 SS G_CDS: 1.70 Total: 46.62 kcal
Total: -64.55 3.41 -61.13 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000810713107.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -41.256 kcal
(2) G-P(sol) polarization free energy of solvation -64.545 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.801 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.414 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.132 kcal
(6) G-S(sol) free energy of system = (1) + (5) -102.388 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds