Wall clock time and date at job start Mon Mar 30 2020 00:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99533 * 2 1 4 4 H 1.48497 * 109.47222 * 267.73995 * 3 2 1 5 5 H 1.48504 * 109.47218 * 27.73857 * 3 2 1 6 6 H 1.48498 * 109.47186 * 147.74106 * 3 2 1 7 7 C 1.37877 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99592 * 353.58074 * 7 2 1 9 9 C 1.50703 * 119.99991 * 173.58346 * 7 2 1 10 10 C 1.52999 * 115.54706 * 299.61827 * 9 7 2 11 11 N 1.46496 * 109.47488 * 320.34679 * 10 9 7 12 12 C 1.34777 * 120.00168 * 184.67061 * 11 10 9 13 13 O 1.21281 * 120.00172 * 354.84191 * 12 11 10 14 14 C 1.50700 * 119.99832 * 174.84351 * 12 11 10 15 15 F 1.39903 * 109.47203 * 52.44663 * 14 12 11 16 16 C 1.52997 * 109.47290 * 292.44367 * 14 12 11 17 17 C 1.52997 * 109.47109 * 180.02562 * 16 14 12 18 18 C 1.53004 * 109.47527 * 59.99987 * 17 16 14 19 19 C 1.52997 * 109.46936 * 300.00119 * 18 17 16 20 20 C 1.53004 * 109.47204 * 59.99870 * 19 18 17 21 21 C 1.52996 * 117.49943 * 85.29060 * 9 7 2 22 22 C 1.52996 * 60.03291 * 107.50354 * 21 9 7 23 23 H 0.96995 * 120.00848 * 0.02562 * 1 2 3 24 24 H 1.09007 * 109.47175 * 80.35098 * 10 9 7 25 25 H 1.09007 * 109.46985 * 200.34581 * 10 9 7 26 26 H 0.96998 * 119.99977 * 4.67265 * 11 10 9 27 27 H 1.08997 * 109.47023 * 299.99830 * 16 14 12 28 28 H 1.08994 * 109.47214 * 60.00109 * 16 14 12 29 29 H 1.09000 * 109.47635 * 299.99696 * 17 16 14 30 30 H 1.09007 * 109.47191 * 179.97438 * 17 16 14 31 31 H 1.08997 * 109.47068 * 179.97438 * 18 17 16 32 32 H 1.09001 * 109.46506 * 59.99928 * 18 17 16 33 33 H 1.08997 * 109.47023 * 299.99957 * 19 18 17 34 34 H 1.08994 * 109.47214 * 179.97438 * 19 18 17 35 35 H 1.09002 * 109.46959 * 180.02562 * 20 19 18 36 36 H 1.08994 * 109.47490 * 59.99859 * 20 19 18 37 37 H 1.09004 * 117.49683 * 215.00455 * 21 9 7 38 38 H 1.09002 * 117.50066 * 359.97438 * 21 9 7 39 39 H 1.08997 * 117.50481 * 107.50400 * 22 21 9 40 40 H 1.09001 * 117.49507 * 252.52769 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.5443 2.0189 -1.3989 5 1 1.4232 2.6661 0.6517 6 1 3.5218 1.4546 0.7473 7 6 2.0046 -1.1940 0.0005 8 1 1.4697 -2.1263 0.1055 9 6 3.5046 -1.1980 -0.1453 10 6 4.0432 -0.5862 -1.4401 11 7 3.1811 -0.9741 -2.5592 12 6 3.5143 -0.6275 -3.8183 13 8 4.4761 0.0841 -4.0170 14 6 2.6918 -1.1242 -4.9792 15 9 1.3435 -0.8239 -4.7578 16 6 2.8616 -2.6388 -5.1136 17 6 2.0270 -3.1429 -6.2927 18 6 2.4973 -2.4609 -7.5790 19 6 2.3275 -0.9463 -7.4446 20 6 3.1621 -0.4421 -6.2656 21 6 4.3383 -1.0125 1.1240 22 6 4.2696 -2.3834 0.4484 23 1 -0.4851 0.8399 -0.0004 24 1 4.0561 0.5001 -1.3508 25 1 5.0558 -0.9481 -1.6191 26 1 2.3703 -1.4803 -2.3940 27 1 3.9121 -2.8727 -5.2862 28 1 2.5270 -3.1246 -4.1971 29 1 0.9764 -2.9090 -6.1206 30 1 2.1483 -4.2219 -6.3887 31 1 1.9030 -2.8204 -8.4190 32 1 3.5478 -2.6949 -7.7511 33 1 1.2769 -0.7123 -7.2725 34 1 2.6629 -0.4604 -8.3608 35 1 3.0408 0.6369 -6.1696 36 1 4.2127 -0.6761 -6.4377 37 1 5.2706 -0.4545 1.0367 38 1 3.8019 -0.8870 2.0647 39 1 5.1567 -2.7275 -0.0833 40 1 3.6877 -3.1603 0.9444 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810713107.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:35 Heat of formation + Delta-G solvation = -102.387702 kcal Electronic energy + Delta-G solvation = -21859.424612 eV Core-core repulsion = 18587.509285 eV Total energy + Delta-G solvation = -3271.915327 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.00105 -40.92186 -38.93831 -38.13418 -35.14268 -34.33921 -31.93144 -31.75536 -28.59587 -27.27927 -24.47927 -23.72707 -23.18996 -21.48229 -21.09209 -20.57498 -19.06943 -18.19604 -17.47028 -17.21363 -16.78081 -16.27689 -16.01816 -15.66520 -15.55502 -14.97373 -14.79375 -14.49118 -14.45134 -14.18085 -14.01342 -13.57241 -13.28370 -13.18332 -13.06898 -12.83578 -12.72896 -12.15934 -12.13272 -12.09537 -11.71129 -11.50095 -11.49461 -11.12872 -11.06630 -10.81880 -10.70272 -10.40242 -9.95823 -8.36966 -6.39524 1.25680 1.32358 1.33784 1.39753 2.06328 2.28263 2.91697 3.25487 3.31914 3.39489 3.56174 3.64933 3.97939 4.10307 4.14238 4.25380 4.26877 4.35540 4.41727 4.45505 4.50896 4.60895 4.75956 4.80716 4.91154 4.96002 4.97443 5.03002 5.14987 5.15931 5.19709 5.26958 5.30218 5.43750 5.50392 5.51986 5.65158 6.25957 6.49128 6.69644 7.04379 7.28539 8.76771 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023056 B = 0.006354 C = 0.006021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.151368 B = 4405.862785 C = 4649.387575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.047 3.953 3 Si 0.910 3.090 4 H -0.291 1.291 5 H -0.296 1.296 6 H -0.230 1.230 7 C -0.479 4.479 8 H 0.049 0.951 9 C -0.048 4.048 10 C 0.153 3.847 11 N -0.690 5.690 12 C 0.484 3.516 13 O -0.573 6.573 14 C 0.107 3.893 15 F -0.205 7.205 16 C -0.133 4.133 17 C -0.117 4.117 18 C -0.117 4.117 19 C -0.118 4.118 20 C -0.120 4.120 21 C -0.184 4.184 22 C -0.154 4.154 23 H 0.265 0.735 24 H 0.033 0.967 25 H 0.075 0.925 26 H 0.414 0.586 27 H 0.098 0.902 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.245 -6.128 -13.014 16.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.153 4.153 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.223 1.223 6 H -0.153 1.153 7 C -0.517 4.517 8 H 0.068 0.932 9 C -0.049 4.049 10 C 0.029 3.971 11 N -0.340 5.340 12 C 0.268 3.732 13 O -0.453 6.453 14 C 0.086 3.914 15 F -0.186 7.186 16 C -0.171 4.171 17 C -0.154 4.154 18 C -0.155 4.155 19 C -0.155 4.155 20 C -0.158 4.158 21 C -0.222 4.222 22 C -0.191 4.191 23 H 0.074 0.926 24 H 0.051 0.949 25 H 0.093 0.907 26 H 0.252 0.748 27 H 0.117 0.883 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.112 0.888 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.077 0.923 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.100 0.900 39 H 0.122 0.878 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.725 -5.537 -13.090 16.177 hybrid contribution -0.683 1.151 0.679 1.501 sum 7.042 -4.386 -12.411 14.929 Atomic orbital electron populations 1.69978 1.07732 1.27851 1.51265 1.25424 0.94757 1.01410 0.93726 0.86369 0.80959 0.80855 0.78093 1.21834 1.22348 1.15276 1.20324 0.88850 0.93021 1.49471 0.93242 1.19516 0.92886 1.01944 0.90572 1.20956 0.92934 0.97364 0.85857 1.46122 1.27298 1.55253 1.05342 1.21470 0.85919 0.80493 0.85294 1.90624 1.31018 1.38026 1.85662 1.21398 0.76129 0.99712 0.94156 1.92886 1.34963 1.94830 1.95904 1.22148 1.03728 0.89507 1.01734 1.21545 0.99148 1.01455 0.93292 1.21592 1.02682 0.93701 0.97475 1.21572 0.99582 0.97310 0.97048 1.21914 1.02144 0.99781 0.91991 1.23076 1.01305 1.00514 0.97346 1.22918 1.01496 0.90974 1.03679 0.92552 0.94925 0.90665 0.74795 0.88326 0.90569 0.92236 0.88846 0.89660 0.90481 0.92328 0.89226 0.92307 0.88710 0.88915 0.90033 0.87839 0.89614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.69 13.96 21.45 0.30 -55.39 16 2 C 0.05 2.62 5.46 84.66 0.46 3.08 16 3 Si 0.91 44.92 24.77 68.60 1.70 46.62 16 4 H -0.29 -15.08 6.98 99.48 0.69 -14.39 16 5 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 6 H -0.23 -10.32 6.16 99.48 0.61 -9.71 16 7 C -0.48 -25.00 7.96 25.60 0.20 -24.80 16 8 H 0.05 2.84 8.06 -2.91 -0.02 2.81 16 9 C -0.05 -2.06 1.21 -52.90 -0.06 -2.12 16 10 C 0.15 6.40 4.94 86.38 0.43 6.83 16 11 N -0.69 -28.66 5.36 -463.05 -2.48 -31.14 16 12 C 0.48 19.05 6.79 87.66 0.60 19.64 16 13 O -0.57 -24.97 15.99 -3.03 -0.05 -25.02 16 14 C 0.11 3.42 1.05 -11.54 -0.01 3.41 16 15 F -0.21 -7.61 15.73 44.97 0.71 -6.90 16 16 C -0.13 -3.27 4.97 30.59 0.15 -3.12 16 17 C -0.12 -2.26 5.80 30.59 0.18 -2.08 16 18 C -0.12 -1.90 5.92 30.59 0.18 -1.72 16 19 C -0.12 -2.38 5.80 30.59 0.18 -2.20 16 20 C -0.12 -3.25 4.32 30.60 0.13 -3.12 16 21 C -0.18 -6.97 8.62 30.59 0.26 -6.70 16 22 C -0.15 -5.41 9.89 30.62 0.30 -5.11 16 23 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 24 H 0.03 1.50 5.16 -2.38 -0.01 1.49 16 25 H 0.08 2.83 7.95 -2.38 -0.02 2.81 16 26 H 0.41 17.82 7.33 -92.71 -0.68 17.14 16 27 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.06 1.31 7.80 -2.39 -0.02 1.30 16 30 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.06 1.32 7.80 -2.39 -0.02 1.30 16 34 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.09 2.39 8.02 -2.39 -0.02 2.37 16 37 H 0.09 3.11 8.14 -2.38 -0.02 3.09 16 38 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 39 H 0.10 3.06 8.08 -2.39 -0.02 3.04 16 40 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -64.55 318.71 3.41 -61.13 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: 0.24 Total: 28.71 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: 3.00 Total: -18.01 kcal Atomic # 7 Polarization: -84.35 SS G_CDS: -2.18 Total: -86.53 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.05 Total: -25.02 kcal Atomic # 9 Polarization: -7.61 SS G_CDS: 0.71 Total: -6.90 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.70 Total: 46.62 kcal Total: -64.55 3.41 -61.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810713107.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.256 kcal (2) G-P(sol) polarization free energy of solvation -64.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds