Wall clock time and date at job start Mon Mar 30 2020 01:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86807 * 119.99888 * 2 1 4 4 H 1.48499 * 109.46840 * 269.99529 * 3 2 1 5 5 H 1.48493 * 109.47386 * 29.99917 * 3 2 1 6 6 H 1.48500 * 109.46853 * 150.00297 * 3 2 1 7 7 C 1.37873 * 120.00311 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99753 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00205 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47063 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47063 * 179.97438 * 10 9 7 12 12 O 1.20817 * 120.00230 * 0.02562 * 11 10 9 13 13 O 1.34237 * 119.99762 * 180.02562 * 11 10 9 14 14 C 1.45196 * 116.99768 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.46866 * 180.02562 * 14 13 11 16 16 C 1.53004 * 109.47116 * 179.97438 * 15 14 13 17 17 N 1.46897 * 109.47166 * 179.97438 * 16 15 14 18 18 C 1.46854 * 110.99665 * 170.00131 * 17 16 15 19 19 C 1.53037 * 109.51886 * 185.84309 * 18 17 16 20 20 C 1.53126 * 109.27801 * 300.81620 * 19 18 17 21 21 C 1.53124 * 109.15878 * 57.65645 * 20 19 18 22 22 C 1.46844 * 111.00090 * 294.20807 * 17 16 15 23 23 H 0.97007 * 120.00302 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46868 * 60.00458 * 9 7 2 25 25 H 1.08997 * 109.47484 * 299.99927 * 9 7 2 26 26 H 1.08997 * 109.47217 * 60.00058 * 10 9 7 27 27 H 1.09006 * 109.47359 * 300.00553 * 10 9 7 28 28 H 1.08995 * 109.47159 * 59.99991 * 14 13 11 29 29 H 1.09004 * 109.47331 * 300.00072 * 14 13 11 30 30 H 1.08995 * 109.47303 * 60.00000 * 15 14 13 31 31 H 1.09003 * 109.47067 * 299.99327 * 15 14 13 32 32 H 1.09004 * 109.46918 * 59.99611 * 16 15 14 33 33 H 1.09003 * 109.46728 * 300.00185 * 16 15 14 34 34 H 1.08994 * 109.46310 * 65.82535 * 18 17 16 35 35 H 1.09004 * 109.45830 * 305.85222 * 18 17 16 36 36 H 1.09000 * 109.50480 * 180.88135 * 19 18 17 37 37 H 1.08992 * 109.50737 * 60.75564 * 19 18 17 38 38 H 1.08998 * 109.52297 * 177.56592 * 20 19 18 39 39 H 1.08999 * 109.51925 * 297.75795 * 20 19 18 40 40 H 1.08999 * 109.50059 * 62.28737 * 21 20 19 41 41 H 1.08993 * 109.49981 * 182.40384 * 21 20 19 42 42 H 1.09002 * 109.46133 * 294.17882 * 22 17 16 43 43 H 1.09002 * 109.46211 * 54.14407 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 0.0001 11 6 5.5285 -2.6365 -0.0011 12 8 6.1326 -1.5902 -0.0016 13 8 6.1997 -3.7990 -0.0018 14 6 7.6496 -3.7230 -0.0024 15 6 8.2344 -5.1368 -0.0037 16 6 9.7623 -5.0568 -0.0049 17 7 10.3238 -6.4142 -0.0056 18 6 11.7724 -6.3844 -0.2448 19 6 12.2973 -7.8152 -0.3837 20 6 11.9888 -8.5935 0.8984 21 6 10.4787 -8.5682 1.1507 22 6 10.0065 -7.1156 1.2449 23 1 -0.4851 0.8401 0.0004 24 1 3.8751 -0.6796 0.8895 25 1 3.8745 -0.6808 -0.8905 26 1 3.6579 -3.1505 -0.8896 27 1 3.6584 -3.1502 0.8903 28 1 7.9859 -3.1911 0.8876 29 1 7.9852 -3.1905 -0.8923 30 1 7.8981 -5.6683 -0.8938 31 1 7.8989 -5.6696 0.8861 32 1 10.0990 -4.5251 0.8851 33 1 10.0975 -4.5241 -0.8949 34 1 12.2689 -5.8951 0.5931 35 1 11.9777 -5.8317 -1.1616 36 1 13.3750 -7.7934 -0.5457 37 1 11.8112 -8.3007 -1.2299 38 1 12.3224 -9.6253 0.7874 39 1 12.5062 -8.1308 1.7388 40 1 9.9641 -9.0655 0.3285 41 1 10.2571 -9.0843 2.0848 42 1 10.5113 -6.6227 2.0759 43 1 8.9293 -7.0938 1.4103 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812617813.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:09 Heat of formation + Delta-G solvation = -112.756012 kcal Electronic energy + Delta-G solvation = -20018.216729 eV Core-core repulsion = 16869.312103 eV Total energy + Delta-G solvation = -3148.904626 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.07285 -39.38228 -36.51675 -34.82130 -33.61286 -31.82022 -31.33940 -31.05603 -27.01269 -25.79961 -23.76231 -23.27182 -21.71883 -21.20272 -20.07438 -19.73241 -17.52010 -16.85384 -16.59481 -16.30737 -15.55482 -15.32762 -14.95761 -14.79000 -14.29745 -14.12900 -13.85217 -13.61590 -13.29791 -12.83457 -12.63981 -12.52827 -12.38042 -12.05973 -11.60806 -11.56925 -11.36390 -11.31577 -11.05862 -11.01319 -10.75018 -10.65914 -10.32823 -10.30796 -10.14424 -9.91822 -9.68531 -9.25391 -8.68404 -8.55525 -6.06924 -4.06733 2.71032 2.92600 3.34455 3.41309 3.50568 3.58766 4.40937 4.43493 4.46447 4.53180 4.69301 4.78434 4.91615 4.93320 5.05771 5.10202 5.16592 5.23518 5.25123 5.27782 5.33728 5.37804 5.46188 5.55397 5.56271 5.60359 5.74694 5.80250 5.86749 5.94374 6.00756 6.01307 6.06450 6.50802 6.71557 6.74412 6.82338 7.24462 7.31669 7.71247 8.22886 8.47527 8.95528 9.54877 11.05626 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.056677 B = 0.002470 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.910317 B =11333.928209 C =11656.352145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.070 3.930 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.527 4.527 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.096 4.096 11 C 0.458 3.542 12 O -0.513 6.513 13 O -0.363 6.363 14 C 0.066 3.934 15 C -0.116 4.116 16 C 0.059 3.941 17 N -0.537 5.537 18 C 0.055 3.945 19 C -0.117 4.117 20 C -0.123 4.123 21 C -0.118 4.118 22 C 0.049 3.951 23 H 0.264 0.736 24 H 0.025 0.975 25 H 0.021 0.979 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.036 0.964 33 H 0.079 0.921 34 H 0.032 0.968 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.032 0.968 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.946 -16.647 1.188 30.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.565 4.565 8 H 0.094 0.906 9 C -0.040 4.040 10 C -0.133 4.133 11 C 0.302 3.698 12 O -0.400 6.400 13 O -0.281 6.281 14 C -0.009 4.009 15 C -0.153 4.153 16 C -0.069 4.069 17 N -0.262 5.262 18 C -0.073 4.073 19 C -0.155 4.155 20 C -0.160 4.160 21 C -0.155 4.155 22 C -0.078 4.078 23 H 0.074 0.926 24 H 0.044 0.956 25 H 0.039 0.961 26 H 0.117 0.883 27 H 0.117 0.883 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.055 0.945 33 H 0.097 0.903 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.050 0.950 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 24.795 -16.477 0.809 29.781 hybrid contribution 0.883 1.496 0.662 1.859 sum 25.678 -14.981 1.471 29.764 Atomic orbital electron populations 1.69902 1.06263 1.27060 1.50652 1.24959 0.94734 0.99207 0.94256 0.86798 0.80566 0.83416 0.78782 1.20163 1.21324 1.18621 1.21036 0.88852 0.94802 1.51771 0.90627 1.19481 0.96903 0.89693 0.97896 1.21540 0.83465 1.03465 1.04860 1.24731 0.92743 0.80945 0.71406 1.90611 1.70742 1.33166 1.45514 1.86543 1.20858 1.36077 1.84606 1.22839 0.78004 0.97762 1.02309 1.21528 0.93875 0.95530 1.04410 1.21956 0.94261 0.89355 1.01335 1.61863 1.12449 1.16607 1.35272 1.22089 0.87199 0.97350 1.00628 1.21587 1.00230 0.95119 0.98549 1.21593 0.96392 1.00298 0.97735 1.21589 0.95862 0.95960 1.02120 1.22192 1.01360 0.94461 0.89815 0.92605 0.95636 0.96068 0.88308 0.88313 0.91711 0.91460 0.89798 0.90751 0.94525 0.90296 0.94987 0.90677 0.91612 0.90972 0.91814 0.92403 0.90946 0.91531 0.94972 0.90098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 22.28 27.47 -169.99 -4.67 17.61 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 7 C -0.53 -14.95 9.66 -34.44 -0.33 -15.28 16 8 H 0.08 2.24 7.99 -52.48 -0.42 1.82 16 9 C 0.00 -0.05 3.33 -27.88 -0.09 -0.15 16 10 C -0.10 -1.89 5.75 -27.88 -0.16 -2.05 16 11 C 0.46 8.68 7.96 36.01 0.29 8.97 16 12 O -0.51 -11.12 15.73 -18.74 -0.29 -11.41 16 13 O -0.36 -5.82 10.22 -39.28 -0.40 -6.22 16 14 C 0.07 0.84 5.47 37.16 0.20 1.04 16 15 C -0.12 -1.16 5.52 -26.73 -0.15 -1.30 16 16 C 0.06 0.51 4.96 -3.82 -0.02 0.49 16 17 N -0.54 -4.58 4.66 -234.66 -1.09 -5.68 16 18 C 0.06 0.40 5.46 -3.83 -0.02 0.38 16 19 C -0.12 -0.74 6.09 -26.65 -0.16 -0.90 16 20 C -0.12 -0.75 6.00 -26.60 -0.16 -0.91 16 21 C -0.12 -0.80 6.09 -26.65 -0.16 -0.96 16 22 C 0.05 0.39 5.29 -3.84 -0.02 0.37 16 23 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 24 H 0.03 0.65 7.16 -51.93 -0.37 0.28 16 25 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 26 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 27 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 28 H 0.06 0.83 8.13 -51.93 -0.42 0.40 16 29 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.73 6.43 -51.93 -0.33 0.40 16 32 H 0.04 0.31 8.12 -51.93 -0.42 -0.11 16 33 H 0.08 0.65 7.99 -51.93 -0.41 0.23 16 34 H 0.03 0.24 8.14 -51.93 -0.42 -0.19 16 35 H 0.07 0.52 8.02 -51.93 -0.42 0.10 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 43 H 0.08 0.65 6.21 -51.93 -0.32 0.33 16 LS Contribution 343.43 15.07 5.18 5.18 Total: -1.00 -32.00 343.43 -9.15 -41.15 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -7.75 Total: -5.36 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -0.89 Total: -8.34 kcal Atomic # 7 Polarization: -32.28 SS G_CDS: -0.32 Total: -32.60 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.70 Total: -17.63 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.67 Total: 17.61 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.00 -9.15 -41.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812617813.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.610 kcal (2) G-P(sol) polarization free energy of solvation -31.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds