Wall clock time and date at job start Mon Mar 30 2020 01:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86807 * 119.99888 * 2 1 4 4 H 1.48499 * 109.46840 * 269.99529 * 3 2 1 5 5 H 1.48493 * 109.47386 * 29.99917 * 3 2 1 6 6 H 1.48500 * 109.46853 * 150.00297 * 3 2 1 7 7 C 1.37873 * 120.00311 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99753 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00205 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47063 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47063 * 179.97438 * 10 9 7 12 12 O 1.20817 * 120.00230 * 0.02562 * 11 10 9 13 13 O 1.34237 * 119.99762 * 180.02562 * 11 10 9 14 14 C 1.45196 * 116.99768 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.46866 * 180.02562 * 14 13 11 16 16 C 1.53004 * 109.47116 * 179.97438 * 15 14 13 17 17 N 1.46897 * 109.47166 * 179.97438 * 16 15 14 18 18 C 1.46854 * 110.99665 * 170.00131 * 17 16 15 19 19 C 1.53037 * 109.51886 * 185.84309 * 18 17 16 20 20 C 1.53126 * 109.27801 * 300.81620 * 19 18 17 21 21 C 1.53124 * 109.15878 * 57.65645 * 20 19 18 22 22 C 1.46844 * 111.00090 * 294.20807 * 17 16 15 23 23 H 0.97007 * 120.00302 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46868 * 60.00458 * 9 7 2 25 25 H 1.08997 * 109.47484 * 299.99927 * 9 7 2 26 26 H 1.08997 * 109.47217 * 60.00058 * 10 9 7 27 27 H 1.09006 * 109.47359 * 300.00553 * 10 9 7 28 28 H 1.08995 * 109.47159 * 59.99991 * 14 13 11 29 29 H 1.09004 * 109.47331 * 300.00072 * 14 13 11 30 30 H 1.08995 * 109.47303 * 60.00000 * 15 14 13 31 31 H 1.09003 * 109.47067 * 299.99327 * 15 14 13 32 32 H 1.09004 * 109.46918 * 59.99611 * 16 15 14 33 33 H 1.09003 * 109.46728 * 300.00185 * 16 15 14 34 34 H 1.08994 * 109.46310 * 65.82535 * 18 17 16 35 35 H 1.09004 * 109.45830 * 305.85222 * 18 17 16 36 36 H 1.09000 * 109.50480 * 180.88135 * 19 18 17 37 37 H 1.08992 * 109.50737 * 60.75564 * 19 18 17 38 38 H 1.08998 * 109.52297 * 177.56592 * 20 19 18 39 39 H 1.08999 * 109.51925 * 297.75795 * 20 19 18 40 40 H 1.08999 * 109.50059 * 62.28737 * 21 20 19 41 41 H 1.08993 * 109.49981 * 182.40384 * 21 20 19 42 42 H 1.09002 * 109.46133 * 294.17882 * 22 17 16 43 43 H 1.09002 * 109.46211 * 54.14407 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 0.0001 11 6 5.5285 -2.6365 -0.0011 12 8 6.1326 -1.5902 -0.0016 13 8 6.1997 -3.7990 -0.0018 14 6 7.6496 -3.7230 -0.0024 15 6 8.2344 -5.1368 -0.0037 16 6 9.7623 -5.0568 -0.0049 17 7 10.3238 -6.4142 -0.0056 18 6 11.7724 -6.3844 -0.2448 19 6 12.2973 -7.8152 -0.3837 20 6 11.9888 -8.5935 0.8984 21 6 10.4787 -8.5682 1.1507 22 6 10.0065 -7.1156 1.2449 23 1 -0.4851 0.8401 0.0004 24 1 3.8751 -0.6796 0.8895 25 1 3.8745 -0.6808 -0.8905 26 1 3.6579 -3.1505 -0.8896 27 1 3.6584 -3.1502 0.8903 28 1 7.9859 -3.1911 0.8876 29 1 7.9852 -3.1905 -0.8923 30 1 7.8981 -5.6683 -0.8938 31 1 7.8989 -5.6696 0.8861 32 1 10.0990 -4.5251 0.8851 33 1 10.0975 -4.5241 -0.8949 34 1 12.2689 -5.8951 0.5931 35 1 11.9777 -5.8317 -1.1616 36 1 13.3750 -7.7934 -0.5457 37 1 11.8112 -8.3007 -1.2299 38 1 12.3224 -9.6253 0.7874 39 1 12.5062 -8.1308 1.7388 40 1 9.9641 -9.0655 0.3285 41 1 10.2571 -9.0843 2.0848 42 1 10.5113 -6.6227 2.0759 43 1 8.9293 -7.0938 1.4103 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812617813.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:08 Heat of formation + Delta-G solvation = -131.522341 kcal Electronic energy + Delta-G solvation = -20019.030498 eV Core-core repulsion = 16869.312103 eV Total energy + Delta-G solvation = -3149.718395 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.49802 -40.00993 -37.86504 -35.63346 -35.57482 -33.47304 -32.42813 -31.68846 -28.64265 -26.89868 -24.57209 -23.96784 -23.35345 -22.01608 -21.34037 -20.61280 -19.33987 -18.39453 -17.84197 -17.34787 -16.60748 -16.40052 -16.26911 -15.75818 -15.33893 -15.23170 -14.82908 -14.61740 -14.45953 -14.37190 -13.85737 -13.61742 -13.38441 -13.19707 -12.93859 -12.79358 -12.43775 -12.23024 -12.15793 -12.11797 -12.02150 -11.80577 -11.61108 -11.52616 -11.45753 -11.38130 -11.25731 -11.11804 -10.79096 -9.31903 -8.31917 -6.36182 1.20798 1.34413 1.36353 1.50102 1.66360 2.34436 2.88618 3.03320 3.73875 3.83188 3.88291 3.98501 4.01976 4.07684 4.14849 4.28477 4.31673 4.35729 4.39988 4.44560 4.53780 4.56654 4.65114 4.68200 4.80924 4.85731 4.92050 5.02426 5.07245 5.09020 5.13289 5.24041 5.26602 5.29986 5.36240 5.42859 5.48390 5.59194 6.08525 6.14261 6.21295 6.68944 6.80384 7.28929 8.83561 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.056677 B = 0.002470 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.910317 B =11333.928209 C =11656.352145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.013 3.987 3 Si 0.940 3.060 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.532 4.532 8 H 0.051 0.949 9 C 0.002 3.998 10 C -0.092 4.092 11 C 0.469 3.531 12 O -0.543 6.543 13 O -0.358 6.358 14 C 0.061 3.939 15 C -0.103 4.103 16 C 0.063 3.937 17 N -0.546 5.546 18 C 0.053 3.947 19 C -0.115 4.115 20 C -0.122 4.122 21 C -0.116 4.116 22 C 0.047 3.953 23 H 0.268 0.732 24 H 0.017 0.983 25 H 0.016 0.984 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.038 0.962 33 H 0.084 0.916 34 H 0.032 0.968 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.031 0.969 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.916 -17.089 1.221 31.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.185 4.185 3 Si 0.764 3.236 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.570 4.570 8 H 0.070 0.930 9 C -0.036 4.036 10 C -0.130 4.130 11 C 0.314 3.686 12 O -0.433 6.433 13 O -0.275 6.275 14 C -0.013 4.013 15 C -0.141 4.141 16 C -0.065 4.065 17 N -0.271 5.271 18 C -0.075 4.075 19 C -0.153 4.153 20 C -0.159 4.159 21 C -0.154 4.154 22 C -0.080 4.080 23 H 0.077 0.923 24 H 0.035 0.965 25 H 0.034 0.966 26 H 0.132 0.868 27 H 0.132 0.868 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.057 0.943 33 H 0.102 0.898 34 H 0.050 0.950 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.049 0.951 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 26.780 -16.953 0.840 31.706 hybrid contribution 0.284 1.518 0.653 1.677 sum 27.065 -15.435 1.493 31.192 Atomic orbital electron populations 1.70019 1.07849 1.28209 1.52141 1.25820 0.95538 1.02964 0.94153 0.85804 0.79287 0.79264 0.79225 1.19251 1.20425 1.18240 1.21344 0.90910 0.93918 1.50798 0.93025 1.19325 0.94368 0.92818 0.97084 1.21344 0.84559 1.00618 1.06448 1.24329 0.92368 0.81153 0.70739 1.90604 1.71255 1.34301 1.47121 1.86509 1.22809 1.34304 1.83846 1.23137 0.75900 0.99677 1.02583 1.21442 0.94692 0.93587 1.04401 1.21899 0.93140 0.89781 1.01720 1.61876 1.13300 1.16344 1.35614 1.22153 0.86429 0.98107 1.00776 1.21584 1.00926 0.94401 0.98381 1.21596 0.95843 1.00844 0.97651 1.21586 0.96313 0.95193 1.02321 1.22225 1.01140 0.95101 0.89566 0.92288 0.96466 0.96580 0.86796 0.86811 0.91511 0.91206 0.90050 0.90502 0.94346 0.89757 0.94985 0.90319 0.90333 0.91614 0.90930 0.92280 0.91631 0.90659 0.95103 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.50 13.96 21.44 0.30 -58.20 16 2 C 0.01 0.78 5.47 84.66 0.46 1.24 16 3 Si 0.94 45.73 27.47 68.60 1.88 47.61 16 4 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.26 -12.32 6.54 99.48 0.65 -11.67 16 7 C -0.53 -30.29 9.66 25.60 0.25 -30.04 16 8 H 0.05 3.11 7.99 -2.91 -0.02 3.08 16 9 C 0.00 0.08 3.33 29.85 0.10 0.18 16 10 C -0.09 -3.53 5.75 29.85 0.17 -3.36 16 11 C 0.47 17.08 7.96 71.24 0.57 17.65 16 12 O -0.54 -22.85 15.73 21.99 0.35 -22.50 16 13 O -0.36 -10.83 10.22 -51.48 -0.53 -11.35 16 14 C 0.06 1.47 5.47 71.98 0.39 1.86 16 15 C -0.10 -1.90 5.52 30.60 0.17 -1.73 16 16 C 0.06 0.98 4.96 86.31 0.43 1.41 16 17 N -0.55 -8.50 4.66 -896.34 -4.17 -12.68 16 18 C 0.05 0.69 5.46 86.32 0.47 1.16 16 19 C -0.12 -1.26 6.09 30.65 0.19 -1.07 16 20 C -0.12 -1.28 6.00 30.68 0.18 -1.10 16 21 C -0.12 -1.41 6.09 30.65 0.19 -1.23 16 22 C 0.05 0.68 5.29 86.33 0.46 1.14 16 23 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 24 H 0.02 0.85 7.16 -2.39 -0.02 0.84 16 25 H 0.02 0.78 7.53 -2.39 -0.02 0.77 16 26 H 0.11 4.00 8.14 -2.39 -0.02 3.99 16 27 H 0.11 4.00 8.14 -2.38 -0.02 3.98 16 28 H 0.07 1.60 8.13 -2.39 -0.02 1.58 16 29 H 0.07 1.66 8.13 -2.38 -0.02 1.64 16 30 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.08 1.39 6.43 -2.39 -0.02 1.37 16 32 H 0.04 0.60 8.12 -2.39 -0.02 0.58 16 33 H 0.08 1.24 7.99 -2.39 -0.02 1.22 16 34 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.08 0.95 8.02 -2.39 -0.02 0.93 16 36 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.08 1.15 6.21 -2.39 -0.01 1.13 16 Total: -1.00 -67.15 343.43 2.75 -64.40 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: 0.90 Total: 6.62 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: 4.02 Total: -13.89 kcal Atomic # 7 Polarization: -67.01 SS G_CDS: -3.87 Total: -70.88 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -0.18 Total: -33.86 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.88 Total: 47.61 kcal Total: -67.15 2.75 -64.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812617813.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.122 kcal (2) G-P(sol) polarization free energy of solvation -67.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds