Wall clock time and date at job start Mon Mar 30 2020 01:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47182 * 180.02562 * 9 7 2 11 11 C 1.46901 * 110.99820 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47213 * 179.97438 * 11 10 9 13 13 H 1.08996 * 110.61894 * 305.70076 * 12 11 10 14 14 C 1.54847 * 110.69814 * 182.61709 * 12 11 10 15 15 O 1.44576 * 101.60727 * 205.59216 * 14 12 11 16 16 C 1.44603 * 105.03846 * 36.91923 * 15 14 12 17 17 C 1.54893 * 106.74955 * 220.29358 * 16 15 14 18 18 C 1.50159 * 109.19749 * 159.41200 * 17 16 15 19 19 C 1.54264 * 112.86145 * 94.00304 * 18 17 16 20 20 C 1.53986 * 112.79158 * 318.00671 * 19 18 17 21 21 C 1.50550 * 112.04719 * 318.56492 * 20 19 18 22 22 C 1.46003 * 111.50728 * 98.02524 * 16 15 14 23 23 O 1.43967 * 110.69384 * 68.78190 * 12 11 10 24 24 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 26 26 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 27 27 H 1.00907 * 111.00089 * 303.95190 * 10 9 7 28 28 H 1.09006 * 109.46752 * 299.99746 * 11 10 9 29 29 H 1.09001 * 109.47540 * 59.99607 * 11 10 9 30 30 H 1.08996 * 110.99759 * 323.67110 * 14 12 11 31 31 H 1.08994 * 110.99626 * 87.50501 * 14 12 11 32 32 H 1.09000 * 109.51715 * 279.33024 * 17 16 15 33 33 H 1.08997 * 109.51579 * 39.49299 * 17 16 15 34 34 H 1.08997 * 108.80168 * 333.13131 * 18 17 16 35 35 H 1.09003 * 108.71220 * 214.80998 * 18 17 16 36 36 H 1.09002 * 108.81739 * 197.15408 * 19 18 17 37 37 H 1.09005 * 108.73542 * 78.80111 * 19 18 17 38 38 H 1.09006 * 108.96582 * 197.90205 * 20 19 18 39 39 H 1.08997 * 108.89516 * 79.17925 * 20 19 18 40 40 H 1.09002 * 109.69083 * 334.86069 * 21 20 19 41 41 H 1.08996 * 109.72934 * 214.28997 * 21 20 19 42 42 H 1.09005 * 108.76678 * 301.60229 * 22 16 15 43 43 H 1.09000 * 108.76726 * 59.87392 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6156 0.0018 11 6 1.5054 -4.9070 0.0012 12 6 2.5304 -6.0430 0.0019 13 1 3.2301 -5.9292 -0.8261 14 6 1.8227 -7.4187 -0.0649 15 8 2.8037 -8.2809 0.5551 16 6 3.3866 -7.4860 1.6131 17 6 4.9064 -7.7848 1.6104 18 6 5.6307 -6.6667 2.3032 19 6 5.8746 -6.9475 3.8004 20 6 4.6554 -7.5823 4.4945 21 6 3.3620 -6.9489 4.0557 22 6 2.7791 -7.7877 2.9060 23 8 3.2322 -6.0943 1.2579 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6241 -2.5566 0.8903 26 1 0.6247 -2.5571 -0.8897 27 1 2.8412 -3.5489 -0.7792 28 1 0.8796 -4.9813 0.8906 29 1 0.8815 -4.9816 -0.8894 30 1 0.8947 -7.4086 0.5068 31 1 1.6400 -7.7142 -1.0980 32 1 5.0944 -8.7212 2.1358 33 1 5.2598 -7.8659 0.5825 34 1 5.0418 -5.7545 2.2081 35 1 6.5925 -6.5162 1.8128 36 1 6.1141 -6.0086 4.2997 37 1 6.7248 -7.6229 3.8960 38 1 4.7601 -7.4634 5.5730 39 1 4.6277 -8.6456 4.2566 40 1 3.5496 -5.9321 3.7104 41 1 2.6601 -6.9301 4.8894 42 1 1.7074 -7.5988 2.8425 43 1 2.9359 -8.8429 3.1295 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819211713.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:22 Heat of formation + Delta-G solvation = -109.051600 kcal Electronic energy + Delta-G solvation = -21834.426848 eV Core-core repulsion = 18685.682857 eV Total energy + Delta-G solvation = -3148.743990 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.94137 -37.55962 -35.76748 -34.56045 -32.83329 -32.26429 -31.48719 -29.17917 -26.42690 -24.97978 -24.35676 -23.67580 -21.78078 -21.41892 -20.36824 -19.23028 -17.45305 -16.93519 -16.43592 -15.90825 -15.28270 -15.08129 -14.37139 -14.21570 -13.76580 -13.73913 -13.65194 -13.40686 -13.04873 -13.02872 -12.66456 -12.41089 -12.17961 -11.69257 -11.48731 -11.38165 -11.26048 -11.23518 -10.87966 -10.65977 -10.59552 -10.46022 -10.38849 -10.24819 -10.08132 -10.00537 -9.45484 -8.63895 -8.40789 -7.41975 -6.38101 -4.06800 3.37169 3.45389 3.48772 3.64744 3.97129 4.42838 4.49836 4.58210 4.69730 4.80874 4.91778 5.00289 5.10597 5.13331 5.25803 5.26832 5.36362 5.38612 5.40645 5.45587 5.54757 5.64348 5.74243 5.78473 5.80855 5.92433 6.01131 6.04686 6.12641 6.14147 6.17959 6.21822 6.28973 6.42402 6.61155 6.90242 7.11492 7.22516 7.74803 8.13153 8.43052 8.57753 8.86702 9.64872 11.01869 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021998 B = 0.004373 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.527784 B = 6401.079271 C = 7063.174704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.014 3.986 3 Si 1.077 2.923 4 H -0.287 1.287 5 H -0.288 1.288 6 H -0.285 1.285 7 C -0.594 4.594 8 H 0.057 0.943 9 C 0.184 3.816 10 N -0.673 5.673 11 C 0.060 3.940 12 C 0.058 3.942 13 H 0.080 0.920 14 C 0.021 3.979 15 O -0.381 6.381 16 C 0.257 3.743 17 C -0.116 4.116 18 C -0.124 4.124 19 C -0.116 4.116 20 C -0.119 4.119 21 C -0.112 4.112 22 C -0.131 4.131 23 O -0.348 6.348 24 H 0.267 0.733 25 H 0.018 0.982 26 H -0.025 1.025 27 H 0.331 0.669 28 H 0.072 0.928 29 H 0.033 0.967 30 H 0.073 0.927 31 H 0.105 0.895 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.599 -18.373 4.359 20.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.189 4.189 3 Si 0.905 3.095 4 H -0.214 1.214 5 H -0.214 1.214 6 H -0.211 1.211 7 C -0.632 4.632 8 H 0.075 0.925 9 C 0.057 3.943 10 N -0.303 5.303 11 C -0.070 4.070 12 C 0.000 4.000 13 H 0.098 0.902 14 C -0.056 4.056 15 O -0.302 6.302 16 C 0.181 3.819 17 C -0.154 4.154 18 C -0.161 4.161 19 C -0.154 4.154 20 C -0.157 4.157 21 C -0.149 4.149 22 C -0.168 4.168 23 O -0.269 6.269 24 H 0.077 0.923 25 H 0.036 0.964 26 H -0.007 1.007 27 H 0.147 0.853 28 H 0.091 0.909 29 H 0.051 0.949 30 H 0.091 0.909 31 H 0.123 0.877 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.102 0.898 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.625 -16.757 5.119 19.109 hybrid contribution -0.375 -1.824 -1.019 2.123 sum 7.250 -18.582 4.100 20.363 Atomic orbital electron populations 1.70770 1.06902 1.30398 1.47067 1.25874 0.96481 1.02785 0.93789 0.83436 0.74537 0.74736 0.76815 1.21380 1.21438 1.21087 1.22021 0.94887 0.91175 1.55141 0.92491 1.19674 0.91196 0.89025 0.94423 1.60502 1.20418 1.00306 1.49117 1.22015 0.94307 0.90174 1.00506 1.23727 0.93825 0.94769 0.87642 0.90249 1.24326 0.92755 0.88843 0.99713 1.89325 1.54262 1.38137 1.48455 1.22508 0.93581 0.77641 0.88219 1.21738 0.92679 0.99485 1.01524 1.21212 1.00458 1.00165 0.94302 1.21947 0.97281 1.00605 0.95540 1.21393 0.94783 0.99799 0.99676 1.21125 0.96381 1.00784 0.96659 1.20881 1.00981 1.00968 0.94019 1.89188 1.77181 1.22644 1.37886 0.92327 0.96363 1.00737 0.85274 0.90944 0.94930 0.90855 0.87675 0.91194 0.91165 0.89201 0.92252 0.92070 0.92781 0.92300 0.92378 0.89793 0.91602 0.91574 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.23 13.65 55.43 0.76 -27.47 16 2 C 0.01 0.41 5.46 -17.82 -0.10 0.32 16 3 Si 1.08 25.67 29.90 -169.99 -5.08 20.59 16 4 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.59 -17.25 9.32 -34.44 -0.32 -17.57 16 8 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 9 C 0.18 4.85 4.75 -4.98 -0.02 4.82 16 10 N -0.67 -14.73 6.49 -115.05 -0.75 -15.48 16 11 C 0.06 1.05 5.43 -3.82 -0.02 1.03 16 12 C 0.06 0.87 3.85 -25.76 -0.10 0.77 16 13 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 14 C 0.02 0.26 7.38 38.13 0.28 0.54 16 15 O -0.38 -5.20 10.90 -59.02 -0.64 -5.85 16 16 C 0.26 3.43 0.92 -29.05 -0.03 3.41 16 17 C -0.12 -1.40 4.96 -27.15 -0.13 -1.54 16 18 C -0.12 -1.49 5.20 -27.48 -0.14 -1.63 16 19 C -0.12 -1.20 5.85 -25.56 -0.15 -1.35 16 20 C -0.12 -1.18 5.35 -27.44 -0.15 -1.32 16 21 C -0.11 -1.29 5.58 -27.54 -0.15 -1.44 16 22 C -0.13 -1.57 4.68 -29.64 -0.14 -1.71 16 23 O -0.35 -5.54 7.93 -59.02 -0.47 -6.00 16 24 H 0.27 8.19 7.22 -40.82 -0.29 7.90 16 25 H 0.02 0.52 8.01 -51.93 -0.42 0.10 16 26 H -0.02 -0.68 8.01 -51.93 -0.42 -1.09 16 27 H 0.33 6.95 8.72 -39.29 -0.34 6.61 16 28 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.85 8.05 -51.93 -0.42 0.44 16 31 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.07 0.76 7.05 -51.93 -0.37 0.39 16 33 H 0.07 0.87 8.11 -51.93 -0.42 0.44 16 34 H 0.09 1.33 5.47 -51.93 -0.28 1.04 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.54 6.64 -51.93 -0.34 0.19 16 40 H 0.08 1.17 6.30 -51.93 -0.33 0.84 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.08 0.83 7.41 -51.93 -0.38 0.44 16 LS Contribution 329.15 15.07 4.96 4.96 Total: -1.00 -31.56 329.15 -9.85 -41.40 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -7.45 Total: 3.54 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -1.17 Total: -15.68 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: 0.01 Total: -42.95 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: -1.11 Total: -11.85 kcal Atomic # 14 Polarization: 25.67 SS G_CDS: -5.08 Total: 20.59 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.56 -9.85 -41.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819211713.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.649 kcal (2) G-P(sol) polarization free energy of solvation -31.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds