Wall clock time and date at job start Mon Mar 30 2020 01:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47182 * 180.02562 * 9 7 2 11 11 C 1.46901 * 110.99820 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47213 * 179.97438 * 11 10 9 13 13 H 1.08996 * 110.61894 * 305.70076 * 12 11 10 14 14 C 1.54847 * 110.69814 * 182.61709 * 12 11 10 15 15 O 1.44576 * 101.60727 * 205.59216 * 14 12 11 16 16 C 1.44603 * 105.03846 * 36.91923 * 15 14 12 17 17 C 1.54893 * 106.74955 * 220.29358 * 16 15 14 18 18 C 1.50159 * 109.19749 * 159.41200 * 17 16 15 19 19 C 1.54264 * 112.86145 * 94.00304 * 18 17 16 20 20 C 1.53986 * 112.79158 * 318.00671 * 19 18 17 21 21 C 1.50550 * 112.04719 * 318.56492 * 20 19 18 22 22 C 1.46003 * 111.50728 * 98.02524 * 16 15 14 23 23 O 1.43967 * 110.69384 * 68.78190 * 12 11 10 24 24 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 26 26 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 27 27 H 1.00907 * 111.00089 * 303.95190 * 10 9 7 28 28 H 1.09006 * 109.46752 * 299.99746 * 11 10 9 29 29 H 1.09001 * 109.47540 * 59.99607 * 11 10 9 30 30 H 1.08996 * 110.99759 * 323.67110 * 14 12 11 31 31 H 1.08994 * 110.99626 * 87.50501 * 14 12 11 32 32 H 1.09000 * 109.51715 * 279.33024 * 17 16 15 33 33 H 1.08997 * 109.51579 * 39.49299 * 17 16 15 34 34 H 1.08997 * 108.80168 * 333.13131 * 18 17 16 35 35 H 1.09003 * 108.71220 * 214.80998 * 18 17 16 36 36 H 1.09002 * 108.81739 * 197.15408 * 19 18 17 37 37 H 1.09005 * 108.73542 * 78.80111 * 19 18 17 38 38 H 1.09006 * 108.96582 * 197.90205 * 20 19 18 39 39 H 1.08997 * 108.89516 * 79.17925 * 20 19 18 40 40 H 1.09002 * 109.69083 * 334.86069 * 21 20 19 41 41 H 1.08996 * 109.72934 * 214.28997 * 21 20 19 42 42 H 1.09005 * 108.76678 * 301.60229 * 22 16 15 43 43 H 1.09000 * 108.76726 * 59.87392 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6156 0.0018 11 6 1.5054 -4.9070 0.0012 12 6 2.5304 -6.0430 0.0019 13 1 3.2301 -5.9292 -0.8261 14 6 1.8227 -7.4187 -0.0649 15 8 2.8037 -8.2809 0.5551 16 6 3.3866 -7.4860 1.6131 17 6 4.9064 -7.7848 1.6104 18 6 5.6307 -6.6667 2.3032 19 6 5.8746 -6.9475 3.8004 20 6 4.6554 -7.5823 4.4945 21 6 3.3620 -6.9489 4.0557 22 6 2.7791 -7.7877 2.9060 23 8 3.2322 -6.0943 1.2579 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6241 -2.5566 0.8903 26 1 0.6247 -2.5571 -0.8897 27 1 2.8412 -3.5489 -0.7792 28 1 0.8796 -4.9813 0.8906 29 1 0.8815 -4.9816 -0.8894 30 1 0.8947 -7.4086 0.5068 31 1 1.6400 -7.7142 -1.0980 32 1 5.0944 -8.7212 2.1358 33 1 5.2598 -7.8659 0.5825 34 1 5.0418 -5.7545 2.2081 35 1 6.5925 -6.5162 1.8128 36 1 6.1141 -6.0086 4.2997 37 1 6.7248 -7.6229 3.8960 38 1 4.7601 -7.4634 5.5730 39 1 4.6277 -8.6456 4.2566 40 1 3.5496 -5.9321 3.7104 41 1 2.6601 -6.9301 4.8894 42 1 1.7074 -7.5988 2.8425 43 1 2.9359 -8.8429 3.1295 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819211713.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:22 Heat of formation + Delta-G solvation = -129.725066 kcal Electronic energy + Delta-G solvation = -21835.323316 eV Core-core repulsion = 18685.682857 eV Total energy + Delta-G solvation = -3149.640459 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.00196 -38.57312 -37.38336 -35.90050 -34.75171 -33.19371 -32.70395 -30.49479 -28.15680 -25.93395 -25.75464 -24.89288 -23.75124 -22.72886 -21.37056 -20.11953 -19.13936 -18.47120 -17.53823 -16.92538 -16.70897 -16.20187 -15.91424 -15.63878 -15.46393 -14.96233 -14.81443 -14.66197 -14.24582 -14.06298 -13.97919 -13.65162 -13.57056 -13.10964 -13.06328 -12.94464 -12.51417 -12.46408 -12.24891 -12.20529 -11.91989 -11.80890 -11.44951 -11.28032 -11.14568 -11.07307 -10.81702 -10.63430 -10.51567 -9.25436 -8.73331 -6.44053 1.53049 1.62224 1.80828 2.31831 2.54323 2.91468 3.11477 3.18039 3.50635 3.77884 3.79842 3.83100 3.94803 4.01067 4.19839 4.20548 4.29805 4.33635 4.35610 4.43797 4.47939 4.49433 4.69637 4.72686 4.74005 4.89361 4.89667 4.95913 4.99330 5.07236 5.11325 5.24434 5.29303 5.32351 5.33211 5.50229 5.64175 5.68063 5.97955 6.14212 6.34767 6.51615 6.63463 7.37703 8.66788 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021998 B = 0.004373 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.527784 B = 6401.079271 C = 7063.174704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.036 4.036 3 Si 1.126 2.874 4 H -0.274 1.274 5 H -0.269 1.269 6 H -0.280 1.280 7 C -0.611 4.611 8 H 0.054 0.946 9 C 0.196 3.804 10 N -0.679 5.679 11 C 0.063 3.937 12 C 0.060 3.940 13 H 0.084 0.916 14 C 0.027 3.973 15 O -0.386 6.386 16 C 0.251 3.749 17 C -0.113 4.113 18 C -0.121 4.121 19 C -0.115 4.115 20 C -0.116 4.116 21 C -0.110 4.110 22 C -0.131 4.131 23 O -0.372 6.372 24 H 0.254 0.746 25 H -0.006 1.006 26 H -0.039 1.039 27 H 0.336 0.664 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.079 0.921 31 H 0.133 0.867 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.074 0.926 42 H 0.057 0.943 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.840 -19.570 4.585 21.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.233 4.233 3 Si 0.946 3.054 4 H -0.200 1.200 5 H -0.193 1.193 6 H -0.205 1.205 7 C -0.649 4.649 8 H 0.072 0.928 9 C 0.068 3.932 10 N -0.309 5.309 11 C -0.066 4.066 12 C 0.002 3.998 13 H 0.102 0.898 14 C -0.050 4.050 15 O -0.307 6.307 16 C 0.176 3.824 17 C -0.150 4.150 18 C -0.158 4.158 19 C -0.152 4.152 20 C -0.154 4.154 21 C -0.147 4.147 22 C -0.169 4.169 23 O -0.293 6.293 24 H 0.063 0.937 25 H 0.012 0.988 26 H -0.022 1.022 27 H 0.153 0.847 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.098 0.902 31 H 0.150 0.850 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.076 0.924 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.872 -17.998 5.344 20.765 hybrid contribution -0.777 -1.513 -1.084 2.017 sum 8.095 -19.511 4.260 21.549 Atomic orbital electron populations 1.70903 1.07898 1.29700 1.48834 1.27475 0.96525 1.06795 0.92513 0.82825 0.74094 0.70655 0.77781 1.19951 1.19341 1.20550 1.22378 0.94972 0.92597 1.54987 0.92801 1.19362 0.91229 0.90143 0.92502 1.60360 1.19992 1.01003 1.49573 1.22039 0.95033 0.88953 1.00613 1.23666 0.93466 0.95043 0.87669 0.89826 1.24393 0.92321 0.86914 1.01380 1.89315 1.54593 1.38254 1.48579 1.22735 0.94567 0.76508 0.88632 1.21727 0.91655 1.00139 1.01523 1.21156 1.00040 0.98803 0.95818 1.21942 0.98243 1.00920 0.94127 1.21382 0.93397 1.00218 1.00372 1.21092 0.97728 0.99157 0.96745 1.20918 1.00376 1.02052 0.93538 1.89196 1.77351 1.24572 1.38226 0.93690 0.98826 1.02152 0.84674 0.92066 0.93405 0.90235 0.84954 0.89402 0.91607 0.92419 0.91787 0.92651 0.90885 0.90993 0.91013 0.92846 0.90766 0.92402 0.88574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.63 13.65 21.45 0.29 -58.33 16 2 C -0.04 -2.10 5.46 84.65 0.46 -1.63 16 3 Si 1.13 51.11 29.90 68.60 2.05 53.17 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 7 C -0.61 -36.01 9.32 25.60 0.24 -35.77 16 8 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 9 C 0.20 10.63 4.75 85.56 0.41 11.03 16 10 N -0.68 -30.24 6.49 -517.91 -3.36 -33.61 16 11 C 0.06 2.22 5.43 86.30 0.47 2.69 16 12 C 0.06 1.73 3.85 31.23 0.12 1.85 16 13 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 14 C 0.03 0.61 7.38 72.61 0.54 1.15 16 15 O -0.39 -9.83 10.90 -126.23 -1.38 -11.21 16 16 C 0.25 6.46 0.92 29.09 0.03 6.48 16 17 C -0.11 -2.55 4.96 30.33 0.15 -2.40 16 18 C -0.12 -2.82 5.20 30.11 0.16 -2.66 16 19 C -0.11 -2.19 5.85 31.36 0.18 -2.01 16 20 C -0.12 -2.06 5.35 30.13 0.16 -1.90 16 21 C -0.11 -2.44 5.58 30.07 0.17 -2.28 16 22 C -0.13 -2.98 4.68 28.71 0.13 -2.85 16 23 O -0.37 -11.87 7.93 -126.23 -1.00 -12.87 16 24 H 0.25 16.10 7.22 -92.71 -0.67 15.43 16 25 H -0.01 -0.37 8.01 -2.39 -0.02 -0.39 16 26 H -0.04 -2.19 8.01 -2.38 -0.02 -2.21 16 27 H 0.34 14.26 8.72 -89.69 -0.78 13.48 16 28 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 29 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.08 1.73 8.05 -2.39 -0.02 1.71 16 31 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.09 1.66 7.05 -2.39 -0.02 1.65 16 33 H 0.07 1.53 8.11 -2.39 -0.02 1.51 16 34 H 0.06 1.74 5.47 -2.39 -0.01 1.73 16 35 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.07 1.09 6.64 -2.39 -0.02 1.08 16 40 H 0.05 1.53 6.30 -2.39 -0.02 1.51 16 41 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 43 H 0.10 1.82 7.41 -2.39 -0.02 1.80 16 Total: -1.00 -68.31 329.15 0.11 -68.20 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: 0.30 Total: 22.95 kcal Atomic # 6 Polarization: -31.51 SS G_CDS: 3.21 Total: -28.29 kcal Atomic # 7 Polarization: -88.87 SS G_CDS: -3.07 Total: -91.94 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -2.38 Total: -24.08 kcal Atomic # 14 Polarization: 51.11 SS G_CDS: 2.05 Total: 53.17 kcal Total: -68.31 0.11 -68.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819211713.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.526 kcal (2) G-P(sol) polarization free energy of solvation -68.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds