Wall clock time and date at job start Mon Mar 30 2020 01:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99922 * 2 1 4 4 H 1.48492 * 109.47238 * 240.00239 * 3 2 1 5 5 H 1.48509 * 109.47059 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47125 * 119.99945 * 3 2 1 7 7 C 1.37871 * 119.99738 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99498 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00575 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47254 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99931 * 179.97438 * 10 9 7 12 12 C 1.52989 * 109.47327 * 179.97438 * 11 10 9 13 13 H 1.09005 * 110.75653 * 61.72397 * 12 11 10 14 14 C 1.54849 * 110.70158 * 184.89857 * 12 11 10 15 15 O 1.44588 * 101.58591 * 154.47472 * 14 12 11 16 16 C 1.44616 * 104.99098 * 322.95020 * 15 14 12 17 17 C 1.54855 * 106.78077 * 139.87748 * 16 15 14 18 18 C 1.50166 * 109.13083 * 43.51274 * 17 16 15 19 19 C 1.54253 * 112.83661 * 94.01713 * 18 17 16 20 20 C 1.53986 * 112.79869 * 318.03243 * 19 18 17 21 21 C 1.50536 * 112.08374 * 318.53857 * 20 19 18 22 22 C 1.45997 * 111.43284 * 262.19012 * 16 15 14 23 23 O 1.43963 * 110.69996 * 298.54989 * 12 11 10 24 24 H 0.97009 * 119.99976 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46730 * 59.99532 * 9 7 2 26 26 H 1.09000 * 109.46783 * 300.00061 * 9 7 2 27 27 H 1.00897 * 110.99710 * 303.94975 * 10 9 7 28 28 H 1.09002 * 109.46879 * 60.00031 * 11 10 9 29 29 H 1.09005 * 109.46943 * 300.00404 * 11 10 9 30 30 H 1.08999 * 111.00235 * 36.40151 * 14 12 11 31 31 H 1.08999 * 111.03795 * 272.56970 * 14 12 11 32 32 H 1.08990 * 109.53422 * 163.41043 * 17 16 15 33 33 H 1.09001 * 109.53016 * 283.62289 * 17 16 15 34 34 H 1.09006 * 108.80579 * 333.15384 * 18 17 16 35 35 H 1.09003 * 108.80938 * 214.88677 * 18 17 16 36 36 H 1.09003 * 108.81729 * 197.17453 * 19 18 17 37 37 H 1.09004 * 108.72808 * 78.82622 * 19 18 17 38 38 H 1.09003 * 108.95571 * 197.87194 * 20 19 18 39 39 H 1.09001 * 108.95972 * 79.21398 * 20 19 18 40 40 H 1.08996 * 109.69479 * 334.81422 * 21 20 19 41 41 H 1.09006 * 109.68972 * 214.23609 * 21 20 19 42 42 H 1.09001 * 108.77691 * 62.89141 * 22 16 15 43 43 H 1.09006 * 108.77675 * 181.18888 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5054 -4.9070 0.0001 12 6 2.5302 -6.0430 -0.0006 13 1 3.1482 -6.0063 0.8966 14 6 1.8252 -7.4162 -0.1237 15 8 2.8665 -8.2250 -0.7171 16 6 3.5441 -7.3431 -1.6415 17 6 5.0578 -7.6471 -1.5213 18 6 5.2588 -9.1345 -1.4741 19 6 5.5435 -9.7445 -2.8620 20 6 4.6516 -9.1519 -3.9685 21 6 3.2284 -8.9716 -3.5124 22 6 3.0613 -7.5285 -3.0068 23 8 3.3481 -5.9897 -1.1841 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6248 -2.5570 0.8897 27 1 2.8405 -3.5486 -0.7819 28 1 0.8802 -4.9817 -0.8897 29 1 0.8807 -4.9812 0.8903 30 1 0.9578 -7.3525 -0.7806 31 1 1.5429 -7.8003 0.8566 32 1 5.5817 -7.2359 -2.3840 33 1 5.4483 -7.1975 -0.6083 34 1 4.3612 -9.5975 -1.0640 35 1 6.0981 -9.3549 -0.8144 36 1 5.3763 -10.8205 -2.8141 37 1 6.5876 -9.5624 -3.1168 38 1 4.6655 -9.8196 -4.8300 39 1 5.0534 -8.1835 -4.2666 40 1 3.0098 -9.6710 -2.7055 41 1 2.5499 -9.1492 -4.3469 42 1 2.0047 -7.2635 -3.0443 43 1 3.6136 -6.8606 -3.6680 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819211714.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:25 Heat of formation + Delta-G solvation = -107.127873 kcal Electronic energy + Delta-G solvation = -21589.028983 eV Core-core repulsion = 18440.368412 eV Total energy + Delta-G solvation = -3148.660571 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.97877 -37.65146 -35.49108 -34.53805 -32.66778 -32.38326 -31.49744 -29.26369 -26.69309 -25.06784 -24.31440 -24.07472 -21.54833 -21.06185 -20.34801 -19.41660 -17.35847 -16.94445 -16.40911 -15.62933 -15.20882 -14.89358 -14.76219 -14.57375 -14.07547 -13.67719 -13.45259 -13.19682 -13.01758 -12.86409 -12.79017 -12.27939 -12.22036 -11.67431 -11.62764 -11.36347 -11.30700 -11.15144 -10.95128 -10.74137 -10.66686 -10.57122 -10.51432 -10.38083 -10.00225 -9.86801 -9.43930 -9.15637 -8.46454 -7.29638 -6.01853 -4.03591 3.35547 3.38353 3.38703 3.42454 3.94949 4.42578 4.45253 4.59562 4.62953 4.71334 4.92555 5.00220 5.06455 5.11828 5.17073 5.22038 5.31392 5.34082 5.43668 5.53065 5.59807 5.63859 5.70003 5.79217 5.84193 5.93391 6.00313 6.01344 6.04387 6.05310 6.16012 6.18105 6.26928 6.33111 6.42022 7.21359 7.24075 7.43013 7.79441 8.13175 8.41939 8.62795 9.05538 9.61196 11.09372 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.033058 B = 0.003602 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.799300 B = 7771.658347 C = 8037.245238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.514 4.514 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.686 5.686 11 C 0.063 3.937 12 C 0.059 3.941 13 H 0.090 0.910 14 C 0.018 3.982 15 O -0.374 6.374 16 C 0.264 3.736 17 C -0.120 4.120 18 C -0.120 4.120 19 C -0.116 4.116 20 C -0.122 4.122 21 C -0.108 4.108 22 C -0.136 4.136 23 O -0.373 6.373 24 H 0.262 0.738 25 H -0.014 1.014 26 H 0.027 0.973 27 H 0.337 0.663 28 H 0.025 0.975 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.999 -20.873 -5.271 22.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.552 4.552 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.317 5.317 11 C -0.068 4.068 12 C 0.001 3.999 13 H 0.108 0.892 14 C -0.059 4.059 15 O -0.295 6.295 16 C 0.188 3.812 17 C -0.157 4.157 18 C -0.158 4.158 19 C -0.154 4.154 20 C -0.159 4.159 21 C -0.146 4.146 22 C -0.174 4.174 23 O -0.294 6.294 24 H 0.071 0.929 25 H 0.004 0.996 26 H 0.045 0.955 27 H 0.154 0.846 28 H 0.043 0.957 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.125 0.875 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.064 -20.768 -4.644 22.422 hybrid contribution -0.144 1.022 -0.837 1.329 sum 6.920 -19.746 -5.481 21.630 Atomic orbital electron populations 1.69958 1.06092 1.26889 1.50963 1.24991 0.94892 0.99385 0.95333 0.86523 0.79403 0.82560 0.78693 1.20231 1.21350 1.20130 1.21152 0.93544 0.90215 1.50318 0.91960 1.19560 0.90610 0.87439 0.95694 1.60645 1.20946 1.00633 1.49507 1.21980 0.94011 0.90319 1.00468 1.23853 0.92157 0.94783 0.89060 0.89233 1.24359 0.91670 0.90119 0.99727 1.89298 1.46821 1.35301 1.58087 1.22353 0.93018 0.76348 0.89509 1.21794 0.93679 0.96901 1.03369 1.21188 1.02628 0.95242 0.96697 1.21950 0.99173 0.99695 0.94568 1.21407 0.95295 1.01333 0.97903 1.21115 0.96679 0.95709 1.01062 1.20912 1.02624 0.98372 0.95489 1.89011 1.71547 1.25341 1.43490 0.92871 0.99613 0.95473 0.84562 0.95709 0.90360 0.91002 0.87510 0.90685 0.90740 0.90228 0.92267 0.92378 0.92505 0.92299 0.91944 0.90579 0.91583 0.91417 0.90012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.51 -14.92 9.32 -34.44 -0.32 -15.24 16 8 H 0.06 1.78 7.81 -52.48 -0.41 1.37 16 9 C 0.19 5.20 5.44 -4.98 -0.03 5.17 16 10 N -0.69 -15.33 6.49 -115.06 -0.75 -16.07 16 11 C 0.06 1.12 5.49 -3.83 -0.02 1.10 16 12 C 0.06 0.89 3.95 -25.76 -0.10 0.79 16 13 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 14 C 0.02 0.22 7.38 38.13 0.28 0.50 16 15 O -0.37 -4.80 8.24 -59.04 -0.49 -5.28 16 16 C 0.26 3.44 0.93 -29.07 -0.03 3.41 16 17 C -0.12 -1.40 4.98 -27.16 -0.14 -1.54 16 18 C -0.12 -1.20 5.20 -27.49 -0.14 -1.34 16 19 C -0.12 -0.99 5.85 -25.56 -0.15 -1.14 16 20 C -0.12 -1.04 5.34 -27.45 -0.15 -1.19 16 21 C -0.11 -1.03 5.58 -27.53 -0.15 -1.18 16 22 C -0.14 -1.59 4.68 -29.62 -0.14 -1.73 16 23 O -0.37 -5.96 9.95 -59.04 -0.59 -6.55 16 24 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 25 H -0.01 -0.40 8.14 -51.93 -0.42 -0.82 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.34 7.57 8.23 -39.29 -0.32 7.24 16 28 H 0.02 0.45 8.13 -51.93 -0.42 0.03 16 29 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.07 0.84 8.04 -51.93 -0.42 0.42 16 31 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.07 0.84 7.05 -51.93 -0.37 0.48 16 33 H 0.07 0.94 8.11 -51.93 -0.42 0.52 16 34 H 0.08 0.88 5.44 -51.93 -0.28 0.60 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.55 6.65 -51.93 -0.35 0.21 16 40 H 0.08 0.77 6.28 -51.93 -0.33 0.45 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.08 0.95 7.42 -51.93 -0.39 0.57 16 LS Contribution 329.42 15.07 4.96 4.96 Total: -1.00 -30.74 329.42 -9.80 -40.54 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -7.48 Total: 2.75 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -1.18 Total: -10.87 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: -0.01 Total: -42.55 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -1.07 Total: -11.83 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.74 -9.80 -40.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819211714.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.588 kcal (2) G-P(sol) polarization free energy of solvation -30.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds