Wall clock time and date at job start Mon Mar 30 2020 00:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39538 * 120.14159 * 117.47984 * 3 2 1 5 5 C 1.37968 * 119.85484 * 180.02562 * 4 3 2 6 6 C 1.38344 * 120.14648 * 0.02562 * 5 4 3 7 7 C 1.50695 * 119.85932 * 179.97438 * 6 5 4 8 8 N 1.46897 * 109.47757 * 89.99907 * 7 6 5 9 9 C 1.46848 * 111.00171 * 66.04054 * 8 7 6 10 10 C 1.53039 * 109.51997 * 174.16537 * 9 8 7 11 11 C 1.53119 * 109.28129 * 59.18522 * 10 9 8 12 12 C 1.53119 * 109.15731 * 302.34211 * 11 10 9 13 13 H 1.09002 * 109.50244 * 297.71261 * 12 11 10 14 14 C 1.50695 * 109.50187 * 177.63352 * 12 11 10 15 15 H 1.07995 * 120.00208 * 240.07644 * 14 12 11 16 16 C 1.37880 * 119.99919 * 60.08126 * 14 12 11 17 17 N 1.31509 * 120.00087 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99898 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47508 * 59.99964 * 18 16 14 20 20 H 1.48504 * 109.47020 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47253 * 299.99696 * 18 16 14 22 22 C 1.46855 * 110.99462 * 301.83549 * 8 7 6 23 23 C 1.38345 * 120.28169 * 0.24842 * 6 5 4 24 24 C 1.37973 * 120.14434 * 359.49815 * 23 6 5 25 25 H 4.52069 * 14.02084 * 0.02562 * 4 2 1 26 26 H 1.08005 * 120.06870 * 359.97438 * 4 3 2 27 27 H 1.08006 * 119.92896 * 180.02562 * 5 4 3 28 28 H 1.08997 * 109.47042 * 329.99277 * 7 6 5 29 29 H 1.09003 * 109.47188 * 209.99518 * 7 6 5 30 30 H 1.09001 * 109.45994 * 54.14761 * 9 8 7 31 31 H 1.09004 * 109.45289 * 294.17796 * 9 8 7 32 32 H 1.08998 * 109.50346 * 299.23617 * 10 9 8 33 33 H 1.09009 * 109.53196 * 179.14253 * 10 9 8 34 34 H 1.08999 * 109.52354 * 182.43479 * 11 10 9 35 35 H 1.09004 * 109.57378 * 62.27732 * 11 10 9 36 36 H 0.97001 * 120.00645 * 180.02562 * 17 16 14 37 37 H 1.09003 * 109.46449 * 65.82226 * 22 8 7 38 38 H 1.08992 * 109.46444 * 305.85442 * 22 8 7 39 39 H 1.08005 * 119.92450 * 179.72401 * 23 6 5 40 40 H 1.08000 * 120.07396 * 180.27967 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3064 0.5578 -1.0706 5 6 4.6860 0.5547 -1.0647 6 6 5.3751 0.0005 -0.0008 7 6 6.8820 0.0001 -0.0013 8 7 7.3724 1.2284 0.6381 9 6 7.0235 1.2546 2.0643 10 6 7.6723 2.4720 2.7271 11 6 7.1773 3.7466 2.0380 12 6 7.5100 3.6724 0.5452 13 1 8.5912 3.6233 0.4154 14 6 6.9748 4.8970 -0.1510 15 1 6.2487 4.7935 -0.9437 16 6 7.4121 6.1497 0.2240 17 7 8.2959 6.2758 1.1896 18 14 6.7480 7.6677 -0.6385 19 1 5.2753 7.7338 -0.4605 20 1 7.3718 8.8819 -0.0537 21 1 7.0688 7.5944 -2.0866 22 6 6.8660 2.4203 -0.0544 23 6 4.6866 -0.5585 1.0610 24 6 3.3069 -0.5572 1.0698 25 1 -1.0500 0.0002 0.0006 26 1 2.7696 0.9897 -1.9023 27 1 5.2294 0.9860 -1.8925 28 1 7.2450 -0.0448 -1.0281 29 1 7.2454 -0.8667 0.5507 30 1 7.3848 0.3446 2.5433 31 1 5.9406 1.3164 2.1720 32 1 8.7559 2.4039 2.6316 33 1 7.4010 2.5001 3.7825 34 1 7.6698 4.6135 2.4784 35 1 6.0986 3.8360 2.1668 36 1 8.6034 7.1571 1.4537 37 1 5.7838 2.4766 0.0635 38 1 7.1129 2.3569 -1.1141 39 1 5.2303 -0.9937 1.8866 40 1 2.7705 -0.9899 1.9014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826862226.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:47 Heat of formation + Delta-G solvation = 70.160623 kcal Electronic energy + Delta-G solvation = -20201.258233 eV Core-core repulsion = 17367.594388 eV Total energy + Delta-G solvation = -2833.663846 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.79601 -37.79574 -34.55865 -33.25083 -31.91875 -31.04637 -29.86976 -29.69720 -26.07150 -24.94867 -22.84429 -22.68187 -21.31729 -20.91456 -18.99117 -18.48763 -16.43444 -16.02877 -15.44180 -15.34644 -14.89907 -14.33525 -14.09217 -13.85973 -13.43829 -13.36947 -12.98078 -12.53399 -12.49553 -12.26514 -11.71787 -11.55282 -11.38786 -11.06829 -10.97829 -10.90646 -10.65455 -10.61541 -10.47315 -10.08526 -9.81024 -9.45141 -9.04716 -8.87341 -8.68933 -8.36498 -8.26218 -7.68004 -5.94696 -4.00650 0.94267 1.45193 2.66126 2.97597 3.33761 3.38391 3.40924 3.99741 4.19856 4.43288 4.64868 4.88216 4.99200 5.01836 5.35322 5.38558 5.42643 5.58459 5.65949 5.74689 5.84395 5.99035 6.07308 6.09416 6.10848 6.29352 6.39792 6.46781 6.48704 6.53226 6.66327 6.74870 6.79683 6.98023 6.99788 7.24632 7.41839 7.44187 7.66110 7.76789 7.82239 8.11211 8.20293 8.51129 9.03033 9.63388 11.11291 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.017111 B = 0.005479 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.023785 B = 5108.969484 C = 6050.328510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.138 4.138 3 C -0.004 4.004 4 C -0.093 4.093 5 C -0.102 4.102 6 C -0.098 4.098 7 C 0.087 3.913 8 N -0.525 5.525 9 C 0.059 3.941 10 C -0.118 4.118 11 C -0.110 4.110 12 C 0.055 3.945 13 H 0.033 0.967 14 C -0.513 4.513 15 H 0.052 0.948 16 C 0.064 3.936 17 N -0.889 5.889 18 Si 0.889 3.111 19 H -0.279 1.279 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.064 3.936 23 C -0.111 4.111 24 C -0.097 4.097 25 H 0.223 0.777 26 H 0.124 0.876 27 H 0.129 0.871 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.029 0.971 32 H 0.060 0.940 33 H 0.045 0.955 34 H 0.090 0.910 35 H 0.028 0.972 36 H 0.260 0.740 37 H 0.027 0.973 38 H 0.057 0.943 39 H 0.124 0.876 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.402 -13.953 -0.505 16.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.138 4.138 3 C -0.005 4.005 4 C -0.111 4.111 5 C -0.121 4.121 6 C -0.101 4.101 7 C -0.041 4.041 8 N -0.247 5.247 9 C -0.069 4.069 10 C -0.156 4.156 11 C -0.148 4.148 12 C 0.036 3.964 13 H 0.051 0.949 14 C -0.552 4.552 15 H 0.070 0.930 16 C -0.137 4.137 17 N -0.527 5.527 18 Si 0.717 3.283 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.063 4.063 23 C -0.129 4.129 24 C -0.115 4.115 25 H 0.239 0.761 26 H 0.142 0.858 27 H 0.147 0.853 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.108 0.892 35 H 0.047 0.953 36 H 0.070 0.930 37 H 0.045 0.955 38 H 0.075 0.925 39 H 0.142 0.858 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.733 -13.791 -0.433 15.817 hybrid contribution -1.582 0.957 -0.330 1.879 sum -9.315 -12.834 -0.763 15.877 Atomic orbital electron populations 1.24819 0.95720 1.00396 0.99999 1.20159 0.92124 1.00713 1.00806 1.15929 0.86382 1.01986 0.96165 1.21174 0.94204 0.98295 0.97451 1.21063 0.93589 0.98745 0.98657 1.20961 0.98494 0.96540 0.94059 1.21356 0.87186 0.94539 1.00993 1.62454 1.57829 1.01805 1.02641 1.22097 0.97798 0.98516 0.88520 1.21681 1.00523 0.95889 0.97477 1.21644 0.98464 0.96088 0.98641 1.18661 0.96528 0.89672 0.91535 0.94879 1.21097 1.24628 0.90943 1.18556 0.92979 1.24916 0.94962 0.98783 0.95086 1.69876 1.30894 1.23246 1.28730 0.86717 0.79128 0.82557 0.79925 1.20434 1.21309 1.20298 1.22379 0.96953 0.89900 0.97043 1.20970 0.93567 1.00078 0.98316 1.21115 0.94127 0.99021 0.97216 0.76054 0.85793 0.85341 0.90046 0.90474 0.92555 0.95245 0.92133 0.93604 0.89164 0.95271 0.93037 0.95489 0.92457 0.85767 0.85976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.09 19.25 29.55 0.57 -1.52 16 2 C -0.14 -1.85 13.24 -38.84 -0.51 -2.36 16 3 C 0.00 -0.06 5.72 -107.00 -0.61 -0.67 16 4 C -0.09 -1.31 9.75 -39.20 -0.38 -1.69 16 5 C -0.10 -1.46 7.99 -39.64 -0.32 -1.78 16 6 C -0.10 -1.40 4.04 -104.55 -0.42 -1.82 16 7 C 0.09 1.25 5.55 -4.98 -0.03 1.22 16 8 N -0.53 -9.45 4.86 -236.11 -1.15 -10.59 16 9 C 0.06 1.02 4.83 -3.83 -0.02 1.00 16 10 C -0.12 -2.32 6.09 -26.65 -0.16 -2.48 16 11 C -0.11 -2.64 5.03 -26.61 -0.13 -2.77 16 12 C 0.05 1.37 2.26 -91.69 -0.21 1.17 16 13 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 14 C -0.51 -14.12 8.56 -34.44 -0.29 -14.42 16 15 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 16 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 17 N -0.89 -25.47 11.35 55.43 0.63 -24.84 16 18 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 22 C 0.06 1.34 3.76 -3.83 -0.01 1.33 16 23 C -0.11 -1.46 8.11 -39.64 -0.32 -1.78 16 24 C -0.10 -1.28 9.75 -39.19 -0.38 -1.66 16 25 H 0.22 1.45 7.80 -54.09 -0.42 1.03 16 26 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 27 H 0.13 1.75 8.01 -52.48 -0.42 1.33 16 28 H 0.08 1.10 8.08 -51.93 -0.42 0.68 16 29 H 0.08 0.96 8.00 -51.93 -0.42 0.55 16 30 H 0.06 0.84 8.06 -51.93 -0.42 0.42 16 31 H 0.03 0.53 6.56 -51.93 -0.34 0.19 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 34 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 35 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.03 0.59 6.46 -51.93 -0.34 0.25 16 38 H 0.06 1.18 8.12 -51.93 -0.42 0.76 16 39 H 0.12 1.42 8.04 -52.48 -0.42 1.00 16 40 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 326.35 15.07 4.92 4.92 Total: -1.00 -29.51 326.35 -9.97 -39.48 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -6.01 Total: 1.21 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: -3.34 Total: -26.57 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: -0.52 Total: -35.43 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.51 -9.97 -39.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826862226.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.643 kcal (2) G-P(sol) polarization free energy of solvation -29.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds