Wall clock time and date at job start Mon Mar 30 2020 00:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39538 * 120.14159 * 117.47984 * 3 2 1 5 5 C 1.37968 * 119.85484 * 180.02562 * 4 3 2 6 6 C 1.38344 * 120.14648 * 0.02562 * 5 4 3 7 7 C 1.50695 * 119.85932 * 179.97438 * 6 5 4 8 8 N 1.46897 * 109.47757 * 89.99907 * 7 6 5 9 9 C 1.46848 * 111.00171 * 66.04054 * 8 7 6 10 10 C 1.53039 * 109.51997 * 174.16537 * 9 8 7 11 11 C 1.53119 * 109.28129 * 59.18522 * 10 9 8 12 12 C 1.53119 * 109.15731 * 302.34211 * 11 10 9 13 13 H 1.09002 * 109.50244 * 297.71261 * 12 11 10 14 14 C 1.50695 * 109.50187 * 177.63352 * 12 11 10 15 15 H 1.07995 * 120.00208 * 240.07644 * 14 12 11 16 16 C 1.37880 * 119.99919 * 60.08126 * 14 12 11 17 17 N 1.31509 * 120.00087 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99898 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47508 * 59.99964 * 18 16 14 20 20 H 1.48504 * 109.47020 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47253 * 299.99696 * 18 16 14 22 22 C 1.46855 * 110.99462 * 301.83549 * 8 7 6 23 23 C 1.38345 * 120.28169 * 0.24842 * 6 5 4 24 24 C 1.37973 * 120.14434 * 359.49815 * 23 6 5 25 25 H 4.52069 * 14.02084 * 0.02562 * 4 2 1 26 26 H 1.08005 * 120.06870 * 359.97438 * 4 3 2 27 27 H 1.08006 * 119.92896 * 180.02562 * 5 4 3 28 28 H 1.08997 * 109.47042 * 329.99277 * 7 6 5 29 29 H 1.09003 * 109.47188 * 209.99518 * 7 6 5 30 30 H 1.09001 * 109.45994 * 54.14761 * 9 8 7 31 31 H 1.09004 * 109.45289 * 294.17796 * 9 8 7 32 32 H 1.08998 * 109.50346 * 299.23617 * 10 9 8 33 33 H 1.09009 * 109.53196 * 179.14253 * 10 9 8 34 34 H 1.08999 * 109.52354 * 182.43479 * 11 10 9 35 35 H 1.09004 * 109.57378 * 62.27732 * 11 10 9 36 36 H 0.97001 * 120.00645 * 180.02562 * 17 16 14 37 37 H 1.09003 * 109.46449 * 65.82226 * 22 8 7 38 38 H 1.08992 * 109.46444 * 305.85442 * 22 8 7 39 39 H 1.08005 * 119.92450 * 179.72401 * 23 6 5 40 40 H 1.08000 * 120.07396 * 180.27967 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3064 0.5578 -1.0706 5 6 4.6860 0.5547 -1.0647 6 6 5.3751 0.0005 -0.0008 7 6 6.8820 0.0001 -0.0013 8 7 7.3724 1.2284 0.6381 9 6 7.0235 1.2546 2.0643 10 6 7.6723 2.4720 2.7271 11 6 7.1773 3.7466 2.0380 12 6 7.5100 3.6724 0.5452 13 1 8.5912 3.6233 0.4154 14 6 6.9748 4.8970 -0.1510 15 1 6.2487 4.7935 -0.9437 16 6 7.4121 6.1497 0.2240 17 7 8.2959 6.2758 1.1896 18 14 6.7480 7.6677 -0.6385 19 1 5.2753 7.7338 -0.4605 20 1 7.3718 8.8819 -0.0537 21 1 7.0688 7.5944 -2.0866 22 6 6.8660 2.4203 -0.0544 23 6 4.6866 -0.5585 1.0610 24 6 3.3069 -0.5572 1.0698 25 1 -1.0500 0.0002 0.0006 26 1 2.7696 0.9897 -1.9023 27 1 5.2294 0.9860 -1.8925 28 1 7.2450 -0.0448 -1.0281 29 1 7.2454 -0.8667 0.5507 30 1 7.3848 0.3446 2.5433 31 1 5.9406 1.3164 2.1720 32 1 8.7559 2.4039 2.6316 33 1 7.4010 2.5001 3.7825 34 1 7.6698 4.6135 2.4784 35 1 6.0986 3.8360 2.1668 36 1 8.6034 7.1571 1.4537 37 1 5.7838 2.4766 0.0635 38 1 7.1129 2.3569 -1.1141 39 1 5.2303 -0.9937 1.8866 40 1 2.7705 -0.9899 1.9014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826862226.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:47 Heat of formation + Delta-G solvation = 54.645475 kcal Electronic energy + Delta-G solvation = -20201.931020 eV Core-core repulsion = 17367.594388 eV Total energy + Delta-G solvation = -2834.336633 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.96093 -39.19977 -36.02762 -34.68355 -33.45364 -32.16987 -31.49837 -30.98376 -27.34968 -26.91446 -24.18072 -23.86770 -22.82861 -22.32905 -20.25829 -19.84840 -18.43852 -17.10308 -16.82903 -16.46272 -16.35791 -15.92702 -15.57916 -15.17799 -14.84038 -14.46698 -14.38715 -14.18241 -13.90504 -13.84691 -13.26389 -12.92523 -12.82716 -12.57567 -12.50315 -12.45958 -12.07466 -12.00232 -11.75964 -11.68975 -11.40724 -11.36673 -10.86310 -10.65209 -10.36959 -9.91239 -9.41640 -9.09831 -8.07297 -6.21012 -0.06875 0.42358 1.40320 1.41402 1.48964 1.75994 2.01070 2.42667 2.96985 3.19537 3.25960 3.37115 3.87402 3.91913 4.01287 4.23625 4.30463 4.34992 4.42680 4.48117 4.66420 4.69173 4.70948 4.81442 4.92357 4.95539 5.01381 5.07411 5.09605 5.15485 5.21189 5.40775 5.42255 5.47153 5.52574 5.61839 5.64063 5.96874 5.98759 6.13799 6.22391 6.37169 6.47672 6.55920 6.91493 7.46472 8.97126 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.017111 B = 0.005479 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.023785 B = 5108.969484 C = 6050.328510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.199 4.199 3 C -0.013 4.013 4 C -0.109 4.109 5 C -0.114 4.114 6 C -0.111 4.111 7 C 0.091 3.909 8 N -0.535 5.535 9 C 0.064 3.936 10 C -0.113 4.113 11 C -0.103 4.103 12 C 0.051 3.949 13 H -0.003 1.003 14 C -0.535 4.535 15 H 0.048 0.952 16 C 0.016 3.984 17 N -0.915 5.915 18 Si 0.950 3.050 19 H -0.275 1.275 20 H -0.283 1.283 21 H -0.270 1.270 22 C 0.084 3.916 23 C -0.108 4.108 24 C -0.104 4.104 25 H 0.262 0.738 26 H 0.130 0.870 27 H 0.127 0.873 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.027 0.973 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.015 0.985 36 H 0.260 0.740 37 H 0.018 0.982 38 H 0.054 0.946 39 H 0.147 0.853 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.887 -15.413 -0.160 18.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.199 4.199 3 C -0.014 4.014 4 C -0.127 4.127 5 C -0.133 4.133 6 C -0.113 4.113 7 C -0.037 4.037 8 N -0.257 5.257 9 C -0.064 4.064 10 C -0.150 4.150 11 C -0.141 4.141 12 C 0.033 3.967 13 H 0.015 0.985 14 C -0.574 4.574 15 H 0.067 0.933 16 C -0.183 4.183 17 N -0.554 5.554 18 Si 0.776 3.224 19 H -0.200 1.200 20 H -0.208 1.208 21 H -0.195 1.195 22 C -0.043 4.043 23 C -0.127 4.127 24 C -0.122 4.122 25 H 0.279 0.721 26 H 0.148 0.852 27 H 0.145 0.855 28 H 0.104 0.896 29 H 0.123 0.877 30 H 0.112 0.888 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.034 0.966 36 H 0.069 0.931 37 H 0.036 0.964 38 H 0.073 0.927 39 H 0.164 0.836 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.220 -15.270 -0.095 17.837 hybrid contribution -1.209 1.385 -0.439 1.890 sum -10.429 -13.885 -0.534 17.374 Atomic orbital electron populations 1.25801 0.96495 0.97456 0.97266 1.20506 0.92768 1.03257 1.03359 1.16197 0.87370 1.01546 0.96255 1.21329 0.94306 0.98985 0.98120 1.21175 0.93924 0.99095 0.99064 1.20968 0.98346 0.97444 0.94573 1.21420 0.87386 0.93372 1.01487 1.62363 1.58300 1.01951 1.03045 1.22084 0.97486 0.98688 0.88093 1.21605 1.00069 0.94782 0.98581 1.21441 0.97126 0.97323 0.98226 1.18599 0.94395 0.91182 0.92564 0.98483 1.21478 1.24692 0.92414 1.18779 0.93329 1.25680 0.95231 1.01653 0.95747 1.70020 1.31831 1.23774 1.29793 0.85740 0.78529 0.79055 0.79102 1.20014 1.20795 1.19519 1.21953 0.95787 0.89763 0.96820 1.21224 0.93723 0.99366 0.98382 1.21392 0.94400 0.98893 0.97546 0.72150 0.85244 0.85524 0.89551 0.87698 0.88832 0.95457 0.92907 0.91426 0.92541 0.96612 0.93090 0.96408 0.92732 0.83562 0.84182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 19.25 74.32 1.43 -1.49 16 2 C -0.20 -5.07 13.24 30.02 0.40 -4.67 16 3 C -0.01 -0.37 5.72 -21.41 -0.12 -0.49 16 4 C -0.11 -3.08 9.75 22.52 0.22 -2.86 16 5 C -0.11 -3.25 7.99 22.23 0.18 -3.07 16 6 C -0.11 -3.01 4.04 -19.82 -0.08 -3.09 16 7 C 0.09 2.40 5.55 85.56 0.47 2.88 16 8 N -0.53 -18.54 4.86 -900.91 -4.38 -22.92 16 9 C 0.06 2.08 4.83 86.33 0.42 2.50 16 10 C -0.11 -4.34 6.09 30.65 0.19 -4.15 16 11 C -0.10 -5.06 5.03 30.67 0.15 -4.90 16 12 C 0.05 2.66 2.26 -11.49 -0.03 2.64 16 13 H 0.00 -0.18 8.14 -2.39 -0.02 -0.19 16 14 C -0.54 -30.29 8.56 25.60 0.22 -30.07 16 15 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 16 C 0.02 0.89 5.30 84.66 0.45 1.34 16 17 N -0.91 -53.96 11.35 21.45 0.24 -53.71 16 18 Si 0.95 44.51 29.54 68.60 2.03 46.53 16 19 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 22 C 0.08 3.57 3.76 86.32 0.32 3.90 16 23 C -0.11 -2.63 8.11 22.23 0.18 -2.45 16 24 C -0.10 -2.60 9.75 22.52 0.22 -2.38 16 25 H 0.26 2.30 7.80 -4.42 -0.03 2.26 16 26 H 0.13 3.31 8.06 -2.91 -0.02 3.28 16 27 H 0.13 3.52 8.01 -2.91 -0.02 3.49 16 28 H 0.09 2.20 8.08 -2.39 -0.02 2.18 16 29 H 0.10 2.23 8.00 -2.39 -0.02 2.21 16 30 H 0.09 2.41 8.06 -2.39 -0.02 2.39 16 31 H 0.03 0.92 6.56 -2.38 -0.02 0.90 16 32 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 34 H 0.06 3.13 6.15 -2.39 -0.01 3.12 16 35 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 37 H 0.02 0.78 6.46 -2.39 -0.02 0.77 16 38 H 0.05 2.29 8.12 -2.39 -0.02 2.27 16 39 H 0.15 2.82 8.04 -2.91 -0.02 2.79 16 40 H 0.14 2.86 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -65.73 326.35 3.51 -62.21 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 1.00 Total: 14.26 kcal Atomic # 6 Polarization: -51.00 SS G_CDS: 4.62 Total: -46.38 kcal Atomic # 7 Polarization: -72.49 SS G_CDS: -4.13 Total: -76.63 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -65.73 3.51 -62.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826862226.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.859 kcal (2) G-P(sol) polarization free energy of solvation -65.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds