Wall clock time and date at job start Mon Mar 30 2020 00:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53120 * 109.52299 * 281.21908 * 3 2 1 5 5 C 1.53033 * 109.27927 * 182.44233 * 4 3 2 6 6 N 1.46842 * 109.52522 * 59.17998 * 5 4 3 7 7 C 1.46895 * 111.00197 * 174.16433 * 6 5 4 8 8 C 1.50702 * 109.47215 * 169.99881 * 7 6 5 9 9 C 1.38628 * 119.74968 * 89.99962 * 8 7 6 10 10 C 1.37621 * 120.25017 * 180.02562 * 9 8 7 11 11 C 1.40711 * 119.74189 * 359.97438 * 10 9 8 12 12 C 1.41398 * 120.24397 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99630 * 335.08421 * 12 11 10 14 14 C 1.39943 * 120.00161 * 155.36018 * 12 11 10 15 15 N 1.30826 * 120.00072 * 341.83072 * 14 12 11 16 16 Si 1.86807 * 120.00001 * 161.82285 * 14 12 11 17 17 H 1.48495 * 109.46894 * 94.53330 * 16 14 12 18 18 H 1.48502 * 109.46836 * 214.52986 * 16 14 12 19 19 H 1.48491 * 109.47097 * 334.53351 * 16 14 12 20 20 C 1.40716 * 119.51471 * 0.27190 * 11 10 9 21 21 C 1.37626 * 119.74005 * 359.47643 * 20 11 10 22 22 C 1.46854 * 111.19605 * 298.25746 * 6 5 4 23 23 C 1.53038 * 109.52009 * 61.74267 * 22 6 5 24 24 H 4.44832 * 5.62990 * 179.97438 * 4 1 2 25 25 H 1.08998 * 109.57468 * 41.37284 * 3 2 1 26 26 H 1.09007 * 109.50270 * 62.49483 * 4 3 2 27 27 H 1.09006 * 109.53305 * 302.40489 * 4 3 2 28 28 H 1.08999 * 109.46200 * 299.15854 * 5 4 3 29 29 H 1.09005 * 109.45417 * 179.19226 * 5 4 3 30 30 H 1.08997 * 109.47499 * 49.99553 * 7 6 5 31 31 H 1.09002 * 109.47031 * 289.99577 * 7 6 5 32 32 H 1.08007 * 119.88040 * 0.02562 * 9 8 7 33 33 H 1.07997 * 120.12852 * 179.97438 * 10 9 8 34 34 H 0.96998 * 120.00159 * 179.97438 * 15 14 12 35 35 H 1.08002 * 120.12837 * 179.69890 * 20 11 10 36 36 H 1.08001 * 119.86959 * 180.27144 * 21 20 11 37 37 H 1.08993 * 109.46252 * 181.75600 * 22 6 5 38 38 H 1.08999 * 109.46217 * 301.72793 * 22 6 5 39 39 H 1.09003 * 109.49849 * 180.87952 * 23 22 6 40 40 H 1.08998 * 109.50397 * 60.76225 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1579 -0.2799 1.4156 5 6 4.6869 -0.2177 1.4216 6 7 5.1257 1.1115 0.9777 7 6 6.5825 1.2539 1.1025 8 6 7.0239 2.5212 0.4168 9 6 7.0779 3.7074 1.1321 10 6 7.4791 4.8708 0.5162 11 6 7.8356 4.8530 -0.8449 12 6 8.2499 6.0420 -1.4883 13 1 7.9304 7.0011 -1.1081 14 6 9.0690 5.9759 -2.6210 15 7 9.7379 4.8822 -2.8816 16 14 9.2069 7.4492 -3.7612 17 1 10.3888 8.2625 -3.3781 18 1 9.3624 6.9788 -5.1611 19 1 7.9794 8.2773 -3.6506 20 6 7.7720 3.6442 -1.5624 21 6 7.3729 2.4918 -0.9245 22 6 4.6862 1.3841 -0.3968 23 6 3.1571 1.3697 -0.4570 24 1 -1.0499 0.0002 0.0001 25 1 3.0116 -0.7699 -0.6788 26 1 2.8327 -1.2716 1.7303 27 1 2.7604 0.4681 2.1018 28 1 5.0839 -0.9756 0.7463 29 1 5.0538 -0.4028 2.4312 30 1 7.0724 0.3990 0.6364 31 1 6.8542 1.2978 2.1572 32 1 6.8042 3.7187 2.1769 33 1 7.5200 5.7939 1.0752 34 1 10.3054 4.8363 -3.6669 35 1 8.0388 3.6201 -2.6087 36 1 7.3276 1.5620 -1.4721 37 1 5.0527 2.3623 -0.7079 38 1 5.0832 0.6187 -1.0636 39 1 2.8315 1.5567 -1.4803 40 1 2.7597 2.1441 0.1992 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830345386.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:56 Heat of formation + Delta-G solvation = 61.198221 kcal Electronic energy + Delta-G solvation = -19744.853653 eV Core-core repulsion = 16910.801169 eV Total energy + Delta-G solvation = -2834.052485 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.20050 -37.44477 -34.95494 -33.56088 -31.68629 -30.77591 -29.73265 -29.26694 -26.84505 -24.60899 -22.97456 -22.46954 -21.01168 -19.91912 -19.53637 -18.14406 -17.29227 -15.75199 -15.31335 -14.89188 -14.67443 -14.52344 -14.03739 -13.77532 -13.48706 -13.27770 -13.15337 -12.48892 -12.09079 -11.92877 -11.84600 -11.53216 -11.17689 -11.13036 -11.03114 -10.94234 -10.89332 -10.66220 -10.47584 -10.36925 -9.98981 -9.87252 -9.52514 -9.38156 -9.11282 -7.92670 -7.42495 -7.27677 -6.77607 -4.35231 2.72629 2.79905 2.82230 3.05939 3.07745 3.10423 3.17833 3.92410 4.25451 4.32092 4.67762 4.91641 5.00769 5.18105 5.37267 5.51255 5.62758 5.69509 5.71821 5.76272 5.84160 5.90628 6.00963 6.07954 6.12867 6.21531 6.30028 6.37558 6.41587 6.49156 6.56130 6.94714 7.07247 7.25811 7.37120 7.50208 7.53222 7.59696 7.61741 7.89063 8.05168 8.13148 8.30141 8.63283 8.89297 8.97218 10.17124 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.027311 B = 0.003990 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.996451 B = 7015.615798 C = 7524.797293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.168 4.168 3 C 0.015 3.985 4 C -0.104 4.104 5 C 0.054 3.946 6 N -0.534 5.534 7 C 0.120 3.880 8 C -0.216 4.216 9 C -0.068 4.068 10 C -0.229 4.229 11 C 0.114 3.886 12 C -0.463 4.463 13 H 0.077 0.923 14 C 0.077 3.923 15 N -0.793 5.793 16 Si 0.905 3.095 17 H -0.271 1.271 18 H -0.276 1.276 19 H -0.260 1.260 20 C -0.166 4.166 21 C -0.093 4.093 22 C 0.056 3.944 23 C -0.106 4.106 24 H 0.215 0.785 25 H 0.086 0.914 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.029 0.971 29 H 0.073 0.927 30 H 0.023 0.977 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.280 0.720 35 H 0.115 0.885 36 H 0.082 0.918 37 H 0.100 0.900 38 H 0.026 0.974 39 H 0.066 0.934 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.733 -8.508 3.295 13.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.168 4.168 3 C -0.003 4.003 4 C -0.142 4.142 5 C -0.074 4.074 6 N -0.258 5.258 7 C -0.006 4.006 8 C -0.217 4.217 9 C -0.087 4.087 10 C -0.249 4.249 11 C 0.111 3.889 12 C -0.493 4.493 13 H 0.095 0.905 14 C -0.141 4.141 15 N -0.418 5.418 16 Si 0.730 3.270 17 H -0.196 1.196 18 H -0.201 1.201 19 H -0.184 1.184 20 C -0.185 4.185 21 C -0.112 4.112 22 C -0.072 4.072 23 C -0.144 4.144 24 H 0.232 0.768 25 H 0.104 0.896 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.047 0.953 29 H 0.092 0.908 30 H 0.041 0.959 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.133 0.867 36 H 0.100 0.900 37 H 0.118 0.882 38 H 0.044 0.956 39 H 0.085 0.915 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.756 -8.270 3.441 13.244 hybrid contribution 0.351 -0.027 -1.122 1.176 sum -9.405 -8.297 2.319 12.754 Atomic orbital electron populations 1.24824 0.95833 1.01791 1.01637 1.23199 0.94332 0.99598 0.99679 1.18466 0.84101 0.99370 0.98343 1.21580 0.95376 1.01706 0.95493 1.22062 0.94606 0.90342 1.00396 1.62108 1.13819 1.26710 1.23210 1.20733 0.85286 0.95303 0.99298 1.18854 1.14151 0.93824 0.94901 1.20339 0.98494 0.92623 0.97252 1.20972 1.12221 0.96596 0.95079 1.17616 0.87873 0.93025 0.90359 1.19603 1.26456 0.94076 1.09127 0.90474 1.25907 0.93525 0.97148 0.97516 1.69831 1.19461 1.27879 1.24631 0.86348 0.79643 0.81709 0.79333 1.19590 1.20055 1.18404 1.21253 1.04924 0.92470 0.99875 1.20521 1.00146 0.96837 0.93739 1.22172 0.93391 1.02909 0.88733 1.21640 0.96037 0.95369 1.01340 0.76847 0.89604 0.91679 0.90741 0.95287 0.90814 0.95855 0.91619 0.89387 0.89117 0.90918 0.86702 0.89968 0.88167 0.95552 0.91497 0.90793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.47 19.25 29.55 0.57 -1.90 16 2 C -0.17 -2.11 12.57 -37.12 -0.47 -2.58 16 3 C 0.02 0.19 2.63 -93.29 -0.25 -0.06 16 4 C -0.10 -1.22 5.33 -26.65 -0.14 -1.36 16 5 C 0.05 0.70 5.42 -3.84 -0.02 0.68 16 6 N -0.53 -8.49 4.80 -236.12 -1.13 -9.63 16 7 C 0.12 2.09 5.42 -4.98 -0.03 2.07 16 8 C -0.22 -4.54 4.15 -104.33 -0.43 -4.98 16 9 C -0.07 -1.51 9.67 -39.66 -0.38 -1.90 16 10 C -0.23 -5.59 9.80 -38.87 -0.38 -5.97 16 11 C 0.11 3.00 5.57 -106.83 -0.59 2.40 16 12 C -0.46 -12.22 9.05 -37.74 -0.34 -12.56 16 13 H 0.08 1.97 7.91 -52.49 -0.42 1.55 16 14 C 0.08 1.92 5.13 -17.34 -0.09 1.83 16 15 N -0.79 -20.35 11.01 55.55 0.61 -19.74 16 16 Si 0.91 18.54 29.60 -169.99 -5.03 13.50 16 17 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 18 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 19 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 20 C -0.17 -4.21 8.69 -38.87 -0.34 -4.55 16 21 C -0.09 -2.10 7.75 -39.66 -0.31 -2.41 16 22 C 0.06 0.89 4.57 -3.83 -0.02 0.87 16 23 C -0.11 -1.48 5.33 -26.65 -0.14 -1.62 16 24 H 0.21 1.57 7.80 -54.10 -0.42 1.15 16 25 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.88 8.12 -51.93 -0.42 0.45 16 30 H 0.02 0.40 8.02 -51.93 -0.42 -0.02 16 31 H 0.07 1.09 8.08 -51.93 -0.42 0.67 16 32 H 0.09 1.77 8.06 -52.48 -0.42 1.34 16 33 H 0.09 2.11 8.06 -52.49 -0.42 1.68 16 34 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 35 H 0.12 3.04 6.21 -52.49 -0.33 2.71 16 36 H 0.08 1.71 8.06 -52.49 -0.42 1.28 16 37 H 0.10 1.91 5.64 -51.93 -0.29 1.61 16 38 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 328.30 15.07 4.95 4.95 Total: -1.00 -26.93 328.30 -10.04 -36.98 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -6.08 Total: 5.98 kcal Atomic # 6 Polarization: -28.68 SS G_CDS: -3.36 Total: -32.04 kcal Atomic # 7 Polarization: -28.84 SS G_CDS: -0.52 Total: -29.37 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -26.93 -10.04 -36.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830345386.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.175 kcal (2) G-P(sol) polarization free energy of solvation -26.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds