Wall clock time and date at job start Mon Mar 30 2020 00:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53120 * 109.52299 * 281.21908 * 3 2 1 5 5 C 1.53033 * 109.27927 * 182.44233 * 4 3 2 6 6 N 1.46842 * 109.52522 * 59.17998 * 5 4 3 7 7 C 1.46895 * 111.00197 * 174.16433 * 6 5 4 8 8 C 1.50702 * 109.47215 * 169.99881 * 7 6 5 9 9 C 1.38628 * 119.74968 * 89.99962 * 8 7 6 10 10 C 1.37621 * 120.25017 * 180.02562 * 9 8 7 11 11 C 1.40711 * 119.74189 * 359.97438 * 10 9 8 12 12 C 1.41398 * 120.24397 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99630 * 335.08421 * 12 11 10 14 14 C 1.39943 * 120.00161 * 155.36018 * 12 11 10 15 15 N 1.30826 * 120.00072 * 341.83072 * 14 12 11 16 16 Si 1.86807 * 120.00001 * 161.82285 * 14 12 11 17 17 H 1.48495 * 109.46894 * 94.53330 * 16 14 12 18 18 H 1.48502 * 109.46836 * 214.52986 * 16 14 12 19 19 H 1.48491 * 109.47097 * 334.53351 * 16 14 12 20 20 C 1.40716 * 119.51471 * 0.27190 * 11 10 9 21 21 C 1.37626 * 119.74005 * 359.47643 * 20 11 10 22 22 C 1.46854 * 111.19605 * 298.25746 * 6 5 4 23 23 C 1.53038 * 109.52009 * 61.74267 * 22 6 5 24 24 H 4.44832 * 5.62990 * 179.97438 * 4 1 2 25 25 H 1.08998 * 109.57468 * 41.37284 * 3 2 1 26 26 H 1.09007 * 109.50270 * 62.49483 * 4 3 2 27 27 H 1.09006 * 109.53305 * 302.40489 * 4 3 2 28 28 H 1.08999 * 109.46200 * 299.15854 * 5 4 3 29 29 H 1.09005 * 109.45417 * 179.19226 * 5 4 3 30 30 H 1.08997 * 109.47499 * 49.99553 * 7 6 5 31 31 H 1.09002 * 109.47031 * 289.99577 * 7 6 5 32 32 H 1.08007 * 119.88040 * 0.02562 * 9 8 7 33 33 H 1.07997 * 120.12852 * 179.97438 * 10 9 8 34 34 H 0.96998 * 120.00159 * 179.97438 * 15 14 12 35 35 H 1.08002 * 120.12837 * 179.69890 * 20 11 10 36 36 H 1.08001 * 119.86959 * 180.27144 * 21 20 11 37 37 H 1.08993 * 109.46252 * 181.75600 * 22 6 5 38 38 H 1.08999 * 109.46217 * 301.72793 * 22 6 5 39 39 H 1.09003 * 109.49849 * 180.87952 * 23 22 6 40 40 H 1.08998 * 109.50397 * 60.76225 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1579 -0.2799 1.4156 5 6 4.6869 -0.2177 1.4216 6 7 5.1257 1.1115 0.9777 7 6 6.5825 1.2539 1.1025 8 6 7.0239 2.5212 0.4168 9 6 7.0779 3.7074 1.1321 10 6 7.4791 4.8708 0.5162 11 6 7.8356 4.8530 -0.8449 12 6 8.2499 6.0420 -1.4883 13 1 7.9304 7.0011 -1.1081 14 6 9.0690 5.9759 -2.6210 15 7 9.7379 4.8822 -2.8816 16 14 9.2069 7.4492 -3.7612 17 1 10.3888 8.2625 -3.3781 18 1 9.3624 6.9788 -5.1611 19 1 7.9794 8.2773 -3.6506 20 6 7.7720 3.6442 -1.5624 21 6 7.3729 2.4918 -0.9245 22 6 4.6862 1.3841 -0.3968 23 6 3.1571 1.3697 -0.4570 24 1 -1.0499 0.0002 0.0001 25 1 3.0116 -0.7699 -0.6788 26 1 2.8327 -1.2716 1.7303 27 1 2.7604 0.4681 2.1018 28 1 5.0839 -0.9756 0.7463 29 1 5.0538 -0.4028 2.4312 30 1 7.0724 0.3990 0.6364 31 1 6.8542 1.2978 2.1572 32 1 6.8042 3.7187 2.1769 33 1 7.5200 5.7939 1.0752 34 1 10.3054 4.8363 -3.6669 35 1 8.0388 3.6201 -2.6087 36 1 7.3276 1.5620 -1.4721 37 1 5.0527 2.3623 -0.7079 38 1 5.0832 0.6187 -1.0636 39 1 2.8315 1.5567 -1.4803 40 1 2.7597 2.1441 0.1992 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830345386.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:55 Heat of formation + Delta-G solvation = 48.425881 kcal Electronic energy + Delta-G solvation = -19745.407504 eV Core-core repulsion = 16910.801169 eV Total energy + Delta-G solvation = -2834.606335 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.49764 -39.08723 -36.31405 -35.18853 -32.91015 -31.94952 -31.24956 -31.10445 -28.41698 -26.11082 -24.09900 -23.90626 -22.80815 -21.53513 -20.80445 -19.20257 -19.02025 -17.19631 -16.85563 -16.33340 -15.93162 -15.73749 -15.56836 -15.22751 -14.86177 -14.63342 -14.45788 -14.13471 -13.79609 -13.46331 -13.21920 -13.04178 -12.69665 -12.66819 -12.42555 -12.22489 -12.14106 -12.04066 -11.88334 -11.80250 -11.33073 -11.22463 -10.99719 -10.91886 -10.81976 -9.34943 -9.26097 -9.02152 -8.63309 -6.31649 0.95148 1.17840 1.37681 1.47930 1.53896 1.90908 1.94061 2.20931 2.68238 3.17338 3.43347 3.78718 3.92658 3.94997 4.19498 4.22532 4.34855 4.38045 4.49871 4.56439 4.59835 4.65880 4.74572 4.80668 4.86571 4.97814 5.04462 5.06571 5.14121 5.17439 5.18458 5.30284 5.38278 5.41094 5.49289 5.73061 5.97771 6.11911 6.15712 6.30661 6.37285 6.41980 6.71965 6.73467 6.96163 7.05827 8.33777 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.027311 B = 0.003990 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.996451 B = 7015.615798 C = 7524.797293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.210 4.210 3 C 0.020 3.980 4 C -0.097 4.097 5 C 0.054 3.946 6 N -0.541 5.541 7 C 0.124 3.876 8 C -0.199 4.199 9 C -0.072 4.072 10 C -0.245 4.245 11 C 0.082 3.918 12 C -0.504 4.504 13 H 0.072 0.928 14 C 0.037 3.963 15 N -0.826 5.826 16 Si 0.979 3.021 17 H -0.262 1.262 18 H -0.265 1.265 19 H -0.260 1.260 20 C -0.188 4.188 21 C -0.091 4.091 22 C 0.060 3.940 23 C -0.100 4.100 24 H 0.246 0.754 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.037 0.963 29 H 0.089 0.911 30 H 0.032 0.968 31 H 0.081 0.919 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.287 0.713 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.064 0.936 38 H 0.029 0.971 39 H 0.068 0.932 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.092 -9.959 3.945 15.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.210 4.210 3 C 0.002 3.998 4 C -0.135 4.135 5 C -0.073 4.073 6 N -0.266 5.266 7 C -0.002 4.002 8 C -0.200 4.200 9 C -0.091 4.091 10 C -0.265 4.265 11 C 0.080 3.920 12 C -0.534 4.534 13 H 0.091 0.909 14 C -0.178 4.178 15 N -0.452 5.452 16 Si 0.800 3.200 17 H -0.187 1.187 18 H -0.190 1.190 19 H -0.184 1.184 20 C -0.208 4.208 21 C -0.110 4.110 22 C -0.067 4.067 23 C -0.138 4.138 24 H 0.262 0.738 25 H 0.111 0.889 26 H 0.105 0.895 27 H 0.084 0.916 28 H 0.055 0.945 29 H 0.107 0.893 30 H 0.050 0.950 31 H 0.099 0.901 32 H 0.131 0.869 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.083 0.917 38 H 0.047 0.953 39 H 0.087 0.913 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.123 -9.737 4.108 15.343 hybrid contribution 0.661 0.291 -1.221 1.419 sum -10.462 -9.446 2.887 14.388 Atomic orbital electron populations 1.25670 0.96725 0.99853 0.99872 1.23411 0.94887 1.01373 1.01376 1.18370 0.84537 0.98096 0.98843 1.21539 0.94387 1.02649 0.94886 1.22169 0.95377 0.88555 1.01243 1.62067 1.12492 1.29155 1.22930 1.20696 0.86512 0.93322 0.99720 1.19260 1.11313 0.95232 0.94227 1.20637 0.97772 0.92170 0.98500 1.21163 1.12831 0.97770 0.94727 1.17936 0.89046 0.93617 0.91450 1.19830 1.28332 0.94033 1.11162 0.90947 1.26721 0.92518 1.00176 0.98389 1.69879 1.20073 1.29823 1.25412 0.85245 0.79618 0.77886 0.77279 1.18716 1.18983 1.18386 1.21201 1.06728 0.93517 0.99320 1.20700 0.99238 0.96510 0.94580 1.22028 0.94777 1.00917 0.89025 1.21538 0.94446 0.96457 1.01313 0.73758 0.88941 0.89496 0.91617 0.94460 0.89279 0.94984 0.90081 0.86880 0.88896 0.90213 0.88562 0.88340 0.91726 0.95324 0.91316 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.93 19.25 74.32 1.43 -2.50 16 2 C -0.21 -4.85 12.57 31.12 0.39 -4.46 16 3 C 0.02 0.45 2.63 -12.52 -0.03 0.42 16 4 C -0.10 -2.02 5.33 30.65 0.16 -1.86 16 5 C 0.05 1.23 5.42 86.33 0.47 1.70 16 6 N -0.54 -16.15 4.80 -900.94 -4.32 -20.47 16 7 C 0.12 4.05 5.42 85.56 0.46 4.51 16 8 C -0.20 -8.24 4.15 -19.68 -0.08 -8.32 16 9 C -0.07 -3.17 9.67 22.22 0.21 -2.96 16 10 C -0.25 -12.29 9.80 22.73 0.22 -12.07 16 11 C 0.08 4.49 5.57 -21.29 -0.12 4.38 16 12 C -0.50 -27.83 9.05 23.46 0.21 -27.61 16 13 H 0.07 3.88 7.91 -2.91 -0.02 3.86 16 14 C 0.04 1.88 5.13 85.26 0.44 2.32 16 15 N -0.83 -43.81 11.01 21.83 0.24 -43.57 16 16 Si 0.98 38.82 29.60 68.60 2.03 40.85 16 17 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 18 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 19 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 20 C -0.19 -9.95 8.69 22.73 0.20 -9.75 16 21 C -0.09 -4.16 7.75 22.22 0.17 -3.99 16 22 C 0.06 1.90 4.57 86.32 0.39 2.29 16 23 C -0.10 -2.71 5.33 30.64 0.16 -2.54 16 24 H 0.25 2.68 7.80 -4.42 -0.03 2.65 16 25 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 27 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.09 1.78 8.12 -2.38 -0.02 1.76 16 30 H 0.03 1.00 8.02 -2.39 -0.02 0.98 16 31 H 0.08 2.43 8.08 -2.39 -0.02 2.41 16 32 H 0.11 4.35 8.06 -2.91 -0.02 4.33 16 33 H 0.09 4.46 8.06 -2.91 -0.02 4.44 16 34 H 0.29 13.75 8.30 -92.71 -0.77 12.98 16 35 H 0.10 5.37 6.21 -2.91 -0.02 5.35 16 36 H 0.10 4.07 8.06 -2.91 -0.02 4.05 16 37 H 0.06 2.49 5.64 -2.39 -0.01 2.47 16 38 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -59.94 328.30 3.64 -56.30 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: 1.00 Total: 27.35 kcal Atomic # 6 Polarization: -65.15 SS G_CDS: 4.70 Total: -60.45 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: -4.08 Total: -64.05 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Total: -59.94 3.64 -56.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830345386.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.725 kcal (2) G-P(sol) polarization free energy of solvation -59.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds