Wall clock time and date at job start Mon Mar 30 2020 01:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86802 * 119.99715 * 2 1 4 4 H 1.48496 * 109.47453 * 269.99777 * 3 2 1 5 5 H 1.48502 * 109.47221 * 30.00529 * 3 2 1 6 6 H 1.48506 * 109.46576 * 150.00011 * 3 2 1 7 7 C 1.37875 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00248 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99968 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47200 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.46978 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00354 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00014 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99992 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.46695 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.46882 * 179.97438 * 15 14 13 17 17 H 1.08999 * 109.47164 * 54.99936 * 16 15 14 18 18 O 1.42903 * 109.47171 * 294.99670 * 16 15 14 19 19 C 1.53003 * 109.47376 * 175.00297 * 16 15 14 20 20 C 1.54264 * 110.02873 * 297.16586 * 19 16 15 21 21 C 1.54887 * 104.19690 * 217.10551 * 20 19 16 22 22 C 1.54885 * 102.74999 * 37.94113 * 21 20 19 23 23 C 1.53868 * 110.03496 * 179.97438 * 19 16 15 24 24 H 0.97002 * 119.99611 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47108 * 59.99600 * 9 7 2 26 26 H 1.09010 * 109.46416 * 299.99707 * 9 7 2 27 27 H 1.09000 * 109.46933 * 59.99541 * 10 9 7 28 28 H 1.08996 * 109.46954 * 299.99790 * 10 9 7 29 29 H 0.97006 * 119.99862 * 359.97438 * 13 11 10 30 30 H 1.09000 * 109.47578 * 59.99819 * 14 13 11 31 31 H 1.09000 * 109.46985 * 299.99052 * 14 13 11 32 32 H 1.09000 * 109.47347 * 60.00110 * 15 14 13 33 33 H 1.08997 * 109.47714 * 299.99650 * 15 14 13 34 34 H 0.96700 * 114.00311 * 300.00378 * 18 16 15 35 35 H 1.08999 * 110.01548 * 58.60149 * 19 16 15 36 36 H 1.08997 * 110.48968 * 335.78304 * 20 19 16 37 37 H 1.09009 * 110.48832 * 98.42689 * 20 19 16 38 38 H 1.09003 * 110.75705 * 279.62799 * 21 20 19 39 39 H 1.08998 * 110.91936 * 156.33473 * 21 20 19 40 40 H 1.09002 * 110.48927 * 203.38258 * 22 21 20 41 41 H 1.08994 * 110.59955 * 80.79161 * 22 21 20 42 42 H 1.09001 * 110.03664 * 238.56548 * 23 19 16 43 43 H 1.09007 * 110.03270 * 359.94800 * 23 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 6 5.5286 -2.6364 -0.0001 12 8 6.1350 -1.5862 -0.0005 13 7 6.2025 -3.8036 -0.0008 14 6 7.6675 -3.8035 -0.0014 15 6 8.1775 -5.2461 -0.0014 16 6 9.7075 -5.2461 -0.0027 17 1 10.0715 -4.6564 0.8386 18 8 10.1828 -4.6771 -1.2243 19 6 10.2177 -6.6831 0.1230 20 6 9.7711 -7.2863 1.4707 21 6 10.9727 -8.1575 1.9137 22 6 12.1911 -7.3099 1.4708 23 6 11.7563 -6.6981 0.1224 24 1 -0.4850 0.8401 0.0004 25 1 3.8746 -0.6807 0.8905 26 1 3.8752 -0.6796 -0.8896 27 1 3.6586 -3.1501 -0.8903 28 1 3.6580 -3.1505 0.8896 29 1 5.7175 -4.6437 -0.0008 30 1 8.0313 -3.2900 0.8886 31 1 8.0304 -3.2896 -0.8914 32 1 7.8138 -5.7601 -0.8911 33 1 7.8146 -5.7598 0.8888 34 1 9.8968 -5.1518 -2.0168 35 1 9.8383 -7.2870 -0.7012 36 1 9.5833 -6.4970 2.1985 37 1 8.8819 -7.9026 1.3369 38 1 10.9634 -9.1186 1.3997 39 1 10.9731 -8.2992 2.9945 40 1 13.0681 -7.9433 1.3370 41 1 12.3964 -6.5243 2.1978 42 1 12.1235 -7.3102 -0.7014 43 1 12.1396 -5.6817 0.0316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831396241.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:17 Heat of formation + Delta-G solvation = -128.725458 kcal Electronic energy + Delta-G solvation = -20218.126336 eV Core-core repulsion = 17068.529223 eV Total energy + Delta-G solvation = -3149.597113 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.74783 -39.04865 -36.71174 -34.85849 -33.44767 -31.88610 -31.14966 -29.24376 -28.92099 -26.26626 -24.30820 -22.12298 -21.17896 -20.98277 -20.24291 -19.60463 -17.22900 -16.89888 -16.29991 -16.11464 -15.77469 -15.67988 -15.13269 -14.86889 -14.07054 -13.88616 -13.72966 -13.64534 -13.04045 -12.62296 -12.55424 -12.42387 -12.14308 -11.65241 -11.50232 -11.46817 -11.39733 -11.28263 -11.16199 -10.98922 -10.92964 -10.81829 -10.19888 -10.11810 -10.02026 -9.75876 -9.20210 -9.12923 -8.82537 -8.48834 -6.01473 -4.00057 3.17402 3.39790 3.43709 3.46428 3.57816 3.95629 4.17614 4.21047 4.38088 4.52868 4.64954 4.72863 4.80209 5.02743 5.06142 5.13713 5.19099 5.25625 5.34097 5.34139 5.41593 5.45280 5.48707 5.54870 5.62110 5.72865 5.80487 5.92394 5.93921 6.00150 6.02698 6.11500 6.12758 6.66187 6.72757 7.34238 7.39263 7.46174 7.78701 7.83595 8.52131 8.70361 9.01628 9.61788 11.11323 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.046077 B = 0.002686 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.527451 B =10421.863695 C =10704.113665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.524 4.524 8 H 0.072 0.928 9 C 0.001 3.999 10 C -0.122 4.122 11 C 0.508 3.492 12 O -0.540 6.540 13 N -0.744 5.744 14 C 0.122 3.878 15 C -0.164 4.164 16 C 0.117 3.883 17 H 0.101 0.899 18 O -0.557 6.557 19 C -0.123 4.123 20 C -0.120 4.120 21 C -0.126 4.126 22 C -0.127 4.127 23 C -0.117 4.117 24 H 0.263 0.737 25 H 0.023 0.977 26 H 0.019 0.981 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.397 0.603 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.373 0.627 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.239 -19.232 1.149 30.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.562 4.562 8 H 0.090 0.910 9 C -0.037 4.037 10 C -0.162 4.162 11 C 0.296 3.704 12 O -0.416 6.416 13 N -0.398 5.398 14 C -0.002 4.002 15 C -0.202 4.202 16 C 0.057 3.943 17 H 0.119 0.881 18 O -0.362 6.362 19 C -0.142 4.142 20 C -0.157 4.157 21 C -0.164 4.164 22 C -0.165 4.165 23 C -0.155 4.155 24 H 0.073 0.927 25 H 0.042 0.958 26 H 0.037 0.963 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.231 0.769 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.221 0.779 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 23.804 -17.894 1.560 29.821 hybrid contribution -0.208 -0.065 -0.376 0.435 sum 23.596 -17.958 1.184 29.676 Atomic orbital electron populations 1.69918 1.06288 1.26951 1.51155 1.24980 0.94722 0.99259 0.94344 0.86789 0.80626 0.83344 0.78763 1.20234 1.21453 1.18511 1.21121 0.89305 0.94546 1.51260 0.90953 1.19371 0.96368 0.90287 0.97665 1.21661 0.88074 1.03227 1.03245 1.21532 0.91563 0.82845 0.74416 1.90656 1.70861 1.31501 1.48621 1.46190 1.06655 1.09160 1.77802 1.21185 0.80596 0.95838 1.02577 1.22553 0.96882 0.97249 1.03516 1.21986 0.91428 0.92963 0.87930 0.88131 1.86625 1.76842 1.57161 1.15612 1.22496 0.96444 0.96514 0.98717 1.22405 0.98061 0.99112 0.96139 1.22497 0.94738 0.98385 1.00740 1.22397 0.97798 0.99096 0.97176 1.22142 0.94373 1.01691 0.97291 0.92738 0.95842 0.96273 0.89695 0.89665 0.76938 0.92038 0.91212 0.90982 0.90179 0.77950 0.90795 0.91146 0.91432 0.91619 0.91572 0.91873 0.91632 0.92026 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.27 13.96 55.43 0.77 -27.49 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 22.91 27.47 -169.99 -4.67 18.24 16 4 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 6 H -0.26 -6.80 6.54 56.52 0.37 -6.43 16 7 C -0.52 -15.19 9.66 -34.44 -0.33 -15.53 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C 0.00 0.03 3.33 -27.88 -0.09 -0.07 16 10 C -0.12 -2.40 5.64 -27.89 -0.16 -2.56 16 11 C 0.51 9.50 7.83 -10.99 -0.09 9.41 16 12 O -0.54 -12.45 15.98 5.56 0.09 -12.36 16 13 N -0.74 -9.97 5.56 -60.29 -0.33 -10.31 16 14 C 0.12 1.46 5.57 -4.04 -0.02 1.44 16 15 C -0.16 -1.25 4.89 -26.73 -0.13 -1.38 16 16 C 0.12 0.87 2.20 -26.73 -0.06 0.81 16 17 H 0.10 0.85 8.12 -51.93 -0.42 0.42 16 18 O -0.56 -4.83 12.31 -35.23 -0.43 -5.26 16 19 C -0.12 -0.75 2.69 -89.50 -0.24 -0.99 16 20 C -0.12 -0.70 5.23 -25.07 -0.13 -0.83 16 21 C -0.13 -0.71 6.91 -24.74 -0.17 -0.88 16 22 C -0.13 -0.76 6.83 -25.04 -0.17 -0.93 16 23 C -0.12 -0.76 6.23 -25.59 -0.16 -0.92 16 24 H 0.26 7.70 8.31 -40.82 -0.34 7.37 16 25 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 26 H 0.02 0.50 7.53 -51.92 -0.39 0.11 16 27 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 28 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 29 H 0.40 4.05 8.47 -40.82 -0.35 3.71 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.96 7.82 -51.93 -0.41 0.55 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.55 7.13 -51.93 -0.37 0.18 16 34 H 0.37 2.04 9.05 45.56 0.41 2.45 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.43 7.77 -51.93 -0.40 0.03 16 37 H 0.07 0.37 8.14 -51.92 -0.42 -0.06 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.56 7.42 -51.92 -0.39 0.17 16 LS Contribution 344.82 15.07 5.20 5.20 Total: -1.00 -35.08 344.82 -8.15 -43.23 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -6.92 Total: -0.76 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -1.85 Total: -10.48 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.44 Total: -37.80 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.34 Total: -17.62 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.67 Total: 18.24 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.08 -8.15 -43.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831396241.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.494 kcal (2) G-P(sol) polarization free energy of solvation -35.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds