Wall clock time and date at job start Mon Mar 30 2020 01:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86802 * 119.99715 * 2 1 4 4 H 1.48496 * 109.47453 * 269.99777 * 3 2 1 5 5 H 1.48502 * 109.47221 * 30.00529 * 3 2 1 6 6 H 1.48506 * 109.46576 * 150.00011 * 3 2 1 7 7 C 1.37875 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00248 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99968 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47200 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.46978 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00354 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00014 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99992 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.46695 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.46882 * 179.97438 * 15 14 13 17 17 H 1.08999 * 109.47164 * 54.99936 * 16 15 14 18 18 O 1.42903 * 109.47171 * 294.99670 * 16 15 14 19 19 C 1.53003 * 109.47376 * 175.00297 * 16 15 14 20 20 C 1.54264 * 110.02873 * 297.16586 * 19 16 15 21 21 C 1.54887 * 104.19690 * 217.10551 * 20 19 16 22 22 C 1.54885 * 102.74999 * 37.94113 * 21 20 19 23 23 C 1.53868 * 110.03496 * 179.97438 * 19 16 15 24 24 H 0.97002 * 119.99611 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47108 * 59.99600 * 9 7 2 26 26 H 1.09010 * 109.46416 * 299.99707 * 9 7 2 27 27 H 1.09000 * 109.46933 * 59.99541 * 10 9 7 28 28 H 1.08996 * 109.46954 * 299.99790 * 10 9 7 29 29 H 0.97006 * 119.99862 * 359.97438 * 13 11 10 30 30 H 1.09000 * 109.47578 * 59.99819 * 14 13 11 31 31 H 1.09000 * 109.46985 * 299.99052 * 14 13 11 32 32 H 1.09000 * 109.47347 * 60.00110 * 15 14 13 33 33 H 1.08997 * 109.47714 * 299.99650 * 15 14 13 34 34 H 0.96700 * 114.00311 * 300.00378 * 18 16 15 35 35 H 1.08999 * 110.01548 * 58.60149 * 19 16 15 36 36 H 1.08997 * 110.48968 * 335.78304 * 20 19 16 37 37 H 1.09009 * 110.48832 * 98.42689 * 20 19 16 38 38 H 1.09003 * 110.75705 * 279.62799 * 21 20 19 39 39 H 1.08998 * 110.91936 * 156.33473 * 21 20 19 40 40 H 1.09002 * 110.48927 * 203.38258 * 22 21 20 41 41 H 1.08994 * 110.59955 * 80.79161 * 22 21 20 42 42 H 1.09001 * 110.03664 * 238.56548 * 23 19 16 43 43 H 1.09007 * 110.03270 * 359.94800 * 23 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 6 5.5286 -2.6364 -0.0001 12 8 6.1350 -1.5862 -0.0005 13 7 6.2025 -3.8036 -0.0008 14 6 7.6675 -3.8035 -0.0014 15 6 8.1775 -5.2461 -0.0014 16 6 9.7075 -5.2461 -0.0027 17 1 10.0715 -4.6564 0.8386 18 8 10.1828 -4.6771 -1.2243 19 6 10.2177 -6.6831 0.1230 20 6 9.7711 -7.2863 1.4707 21 6 10.9727 -8.1575 1.9137 22 6 12.1911 -7.3099 1.4708 23 6 11.7563 -6.6981 0.1224 24 1 -0.4850 0.8401 0.0004 25 1 3.8746 -0.6807 0.8905 26 1 3.8752 -0.6796 -0.8896 27 1 3.6586 -3.1501 -0.8903 28 1 3.6580 -3.1505 0.8896 29 1 5.7175 -4.6437 -0.0008 30 1 8.0313 -3.2900 0.8886 31 1 8.0304 -3.2896 -0.8914 32 1 7.8138 -5.7601 -0.8911 33 1 7.8146 -5.7598 0.8888 34 1 9.8968 -5.1518 -2.0168 35 1 9.8383 -7.2870 -0.7012 36 1 9.5833 -6.4970 2.1985 37 1 8.8819 -7.9026 1.3369 38 1 10.9634 -9.1186 1.3997 39 1 10.9731 -8.2992 2.9945 40 1 13.0681 -7.9433 1.3370 41 1 12.3964 -6.5243 2.1978 42 1 12.1235 -7.3102 -0.7014 43 1 12.1396 -5.6817 0.0316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831396241.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:17 Heat of formation + Delta-G solvation = -154.377194 kcal Electronic energy + Delta-G solvation = -20219.238678 eV Core-core repulsion = 17068.529223 eV Total energy + Delta-G solvation = -3150.709456 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.78122 -40.02534 -37.33988 -36.01718 -35.50740 -33.41681 -32.46735 -29.98399 -29.47225 -27.96371 -25.32069 -23.15600 -22.68278 -21.48980 -21.08827 -20.78004 -19.20733 -17.67574 -17.46153 -17.07032 -16.83410 -16.59765 -16.25120 -16.09566 -15.74483 -14.94450 -14.83720 -14.57817 -14.23812 -14.07894 -14.02654 -13.42127 -13.24662 -12.92043 -12.75017 -12.29045 -12.21751 -12.09066 -11.97093 -11.93804 -11.79541 -11.77201 -11.66529 -11.45067 -11.40381 -11.34188 -10.95710 -10.78550 -10.55726 -10.06314 -8.32068 -6.34724 1.32631 1.34525 1.49929 1.69500 2.26225 2.34612 3.03543 3.41077 3.62938 3.71563 3.87531 3.96267 4.06772 4.12911 4.18527 4.40810 4.46792 4.50423 4.55635 4.60273 4.65944 4.73214 4.79295 4.86659 4.88427 4.99190 5.04388 5.10815 5.14083 5.20863 5.28324 5.33039 5.39799 5.44400 5.48488 5.51325 5.53948 5.61089 6.23151 6.61409 6.71640 6.88826 7.30686 7.33419 8.83482 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.046077 B = 0.002686 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.527451 B =10421.863695 C =10704.113665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.013 3.987 3 Si 0.938 3.062 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.528 4.528 8 H 0.052 0.948 9 C 0.004 3.996 10 C -0.116 4.116 11 C 0.510 3.490 12 O -0.591 6.591 13 N -0.718 5.718 14 C 0.122 3.878 15 C -0.149 4.149 16 C 0.120 3.880 17 H 0.086 0.914 18 O -0.577 6.577 19 C -0.114 4.114 20 C -0.121 4.121 21 C -0.125 4.125 22 C -0.129 4.129 23 C -0.118 4.118 24 H 0.267 0.733 25 H 0.008 0.992 26 H 0.007 0.993 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.417 0.583 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.387 0.613 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.254 -20.863 1.020 32.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.185 4.185 3 Si 0.762 3.238 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.566 4.566 8 H 0.070 0.930 9 C -0.034 4.034 10 C -0.156 4.156 11 C 0.299 3.701 12 O -0.471 6.471 13 N -0.372 5.372 14 C -0.002 4.002 15 C -0.187 4.187 16 C 0.060 3.940 17 H 0.104 0.896 18 O -0.385 6.385 19 C -0.133 4.133 20 C -0.158 4.158 21 C -0.163 4.163 22 C -0.167 4.167 23 C -0.155 4.155 24 H 0.076 0.924 25 H 0.027 0.973 26 H 0.025 0.975 27 H 0.122 0.878 28 H 0.122 0.878 29 H 0.254 0.746 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.236 0.764 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 24.823 -19.598 1.424 31.659 hybrid contribution -0.511 0.359 -0.343 0.713 sum 24.311 -19.239 1.081 31.022 Atomic orbital electron populations 1.70024 1.07705 1.28082 1.52527 1.25801 0.95513 1.02818 0.94321 0.85839 0.79186 0.79606 0.79137 1.19385 1.20253 1.18772 1.21433 0.91180 0.93766 1.50240 0.92974 1.19233 0.93996 0.93959 0.96256 1.21495 0.89146 0.99791 1.05146 1.21262 0.91121 0.83487 0.74276 1.90643 1.71514 1.33544 1.51401 1.45921 1.07453 1.08475 1.75305 1.21271 0.79213 0.98645 1.01060 1.22471 0.96766 0.94241 1.05223 1.21931 0.91187 0.93631 0.87240 0.89588 1.86599 1.77238 1.58065 1.16577 1.22419 0.95987 0.95503 0.99413 1.22430 0.98522 0.99123 0.95732 1.22504 0.94319 0.98465 1.01003 1.22413 0.98342 0.99120 0.96798 1.22128 0.94804 1.00855 0.97740 0.92365 0.97346 0.97462 0.87791 0.87800 0.74580 0.93509 0.92964 0.89023 0.88616 0.76389 0.89536 0.91608 0.90407 0.91067 0.91328 0.91407 0.92210 0.91571 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.33 13.96 21.45 0.30 -59.03 16 2 C 0.01 0.79 5.47 84.65 0.46 1.25 16 3 Si 0.94 47.42 27.47 68.60 1.88 49.30 16 4 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 5 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.26 -13.33 6.54 99.48 0.65 -12.68 16 7 C -0.53 -30.71 9.66 25.60 0.25 -30.46 16 8 H 0.05 3.17 7.99 -2.91 -0.02 3.14 16 9 C 0.00 0.18 3.33 29.85 0.10 0.28 16 10 C -0.12 -4.39 5.64 29.85 0.17 -4.22 16 11 C 0.51 18.41 7.83 87.66 0.69 19.10 16 12 O -0.59 -27.15 15.98 -3.03 -0.05 -27.20 16 13 N -0.72 -17.60 5.56 -463.06 -2.57 -20.17 16 14 C 0.12 2.72 5.57 86.38 0.48 3.21 16 15 C -0.15 -1.86 4.89 30.60 0.15 -1.71 16 16 C 0.12 1.59 2.20 30.60 0.07 1.65 16 17 H 0.09 1.39 8.12 -2.39 -0.02 1.37 16 18 O -0.58 -9.29 12.31 -148.98 -1.83 -11.13 16 19 C -0.11 -1.13 2.69 -10.07 -0.03 -1.16 16 20 C -0.12 -1.11 5.23 31.67 0.17 -0.95 16 21 C -0.13 -1.17 6.91 31.88 0.22 -0.94 16 22 C -0.13 -1.38 6.83 31.69 0.22 -1.17 16 23 C -0.12 -1.37 6.23 31.34 0.20 -1.17 16 24 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 25 H 0.01 0.44 7.16 -2.39 -0.02 0.42 16 26 H 0.01 0.37 7.53 -2.38 -0.02 0.35 16 27 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 28 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 29 H 0.42 7.02 8.47 -92.70 -0.79 6.24 16 30 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.05 1.39 7.82 -2.39 -0.02 1.37 16 32 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.10 0.96 7.13 -2.39 -0.02 0.94 16 34 H 0.39 3.52 9.05 -74.06 -0.67 2.85 16 35 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.07 0.68 7.77 -2.39 -0.02 0.66 16 37 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 38 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.06 0.85 7.42 -2.38 -0.02 0.83 16 Total: -1.00 -76.12 344.82 0.34 -75.79 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -0.52 Total: 8.73 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: 3.13 Total: -16.30 kcal Atomic # 7 Polarization: -76.92 SS G_CDS: -2.27 Total: -79.20 kcal Atomic # 8 Polarization: -36.44 SS G_CDS: -1.88 Total: -38.32 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 1.88 Total: 49.30 kcal Total: -76.12 0.34 -75.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831396241.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.590 kcal (2) G-P(sol) polarization free energy of solvation -76.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds