Wall clock time and date at job start Mon Mar 30 2020 01:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99784 * 2 1 4 4 H 1.48494 * 109.47246 * 239.99789 * 3 2 1 5 5 H 1.48492 * 109.47354 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46674 * 120.00277 * 3 2 1 7 7 C 1.37871 * 119.99819 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00260 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00370 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47148 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46811 * 179.97438 * 10 9 7 12 12 N 1.46906 * 109.46690 * 180.02562 * 11 10 9 13 13 C 1.46900 * 110.99726 * 174.72274 * 12 11 10 14 14 C 1.53005 * 109.46979 * 297.22360 * 13 12 11 15 15 C 1.50695 * 109.46743 * 305.67250 * 14 13 12 16 16 O 1.20828 * 120.00627 * 5.74897 * 15 14 13 17 17 O 1.34231 * 119.99667 * 185.74711 * 15 14 13 18 18 C 1.53008 * 109.47202 * 57.21948 * 13 12 11 19 19 C 1.53005 * 109.46816 * 60.00313 * 18 13 12 20 20 C 1.52998 * 109.47085 * 59.99574 * 19 18 13 21 21 C 1.52995 * 109.47469 * 300.00069 * 20 19 18 22 22 C 1.52994 * 109.47224 * 60.00172 * 21 20 19 23 23 H 0.96998 * 120.00470 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47260 * 59.99660 * 9 7 2 25 25 H 1.08998 * 109.46660 * 299.99869 * 9 7 2 26 26 H 1.08998 * 109.47265 * 59.99728 * 10 9 7 27 27 H 1.08998 * 109.47287 * 299.99551 * 10 9 7 28 28 H 1.08998 * 109.47417 * 59.99834 * 11 10 9 29 29 H 1.08998 * 109.46839 * 299.99838 * 11 10 9 30 30 H 1.00902 * 110.99699 * 298.67155 * 12 11 10 31 31 H 1.09004 * 109.46863 * 185.67381 * 14 13 12 32 32 H 1.08993 * 109.46989 * 65.67450 * 14 13 12 33 33 H 0.96701 * 117.00014 * 180.02562 * 17 15 14 34 34 H 1.08999 * 109.47171 * 179.97438 * 18 13 12 35 35 H 1.09000 * 109.47083 * 300.00183 * 18 13 12 36 36 H 1.09007 * 109.46733 * 299.99963 * 19 18 13 37 37 H 1.08997 * 109.46768 * 179.97438 * 19 18 13 38 38 H 1.09003 * 109.46879 * 179.97438 * 20 19 18 39 39 H 1.08999 * 109.47116 * 60.00295 * 20 19 18 40 40 H 1.08999 * 109.47136 * 300.00214 * 21 20 19 41 41 H 1.08999 * 109.47358 * 180.02562 * 21 20 19 42 42 H 1.09000 * 109.47452 * 180.02562 * 22 21 20 43 43 H 1.09003 * 109.47512 * 60.00029 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 6 1.4802 -4.9871 -0.0033 12 7 2.4349 -6.1037 -0.0037 13 6 1.7390 -7.3913 0.1220 14 6 1.0077 -7.4468 1.4648 15 6 1.9818 -7.1644 2.5793 16 8 3.1168 -6.8396 2.3219 17 8 1.5886 -7.2735 3.8580 18 6 0.7270 -7.5373 -1.0163 19 6 1.4583 -7.4817 -2.3591 20 6 2.4767 -8.6211 -2.4327 21 6 3.4886 -8.4751 -1.2945 22 6 2.7574 -8.5307 0.0482 23 1 -0.4851 0.8400 0.0004 24 1 0.6246 -2.5563 -0.8919 25 1 0.6240 -2.5575 0.8880 26 1 2.8719 -3.6051 0.8872 27 1 2.8718 -3.6036 -0.8927 28 1 0.8532 -5.0443 -0.8930 29 1 0.8539 -5.0453 0.8869 30 1 3.0134 -6.0844 -0.8301 31 1 0.5755 -8.4381 1.6024 32 1 0.2143 -6.6996 1.4775 33 1 2.2487 -7.0819 4.5382 34 1 0.2109 -8.4929 -0.9234 35 1 0.0014 -6.7255 -0.9638 36 1 1.9747 -6.5262 -2.4523 37 1 0.7374 -7.5861 -3.1700 38 1 2.9974 -8.5817 -3.3896 39 1 1.9604 -9.5765 -2.3395 40 1 4.0049 -7.5197 -1.3877 41 1 4.2144 -9.2865 -1.3472 42 1 3.4782 -8.4262 0.8591 43 1 2.2410 -9.4861 0.1415 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833063527.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:16 Heat of formation + Delta-G solvation = -117.032581 kcal Electronic energy + Delta-G solvation = -21799.196061 eV Core-core repulsion = 18650.105989 eV Total energy + Delta-G solvation = -3149.090072 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.64078 -39.05377 -35.80933 -35.10302 -33.41849 -32.03902 -30.83667 -29.86573 -27.68723 -25.75377 -23.06341 -22.68610 -22.09920 -20.54975 -20.01541 -18.53994 -17.74651 -16.47381 -16.30693 -15.90835 -15.62633 -14.97916 -14.59413 -14.48694 -14.26716 -13.96068 -13.31777 -13.05047 -12.49702 -12.39892 -12.26306 -12.13275 -12.05276 -11.85937 -11.50665 -11.28029 -11.17063 -11.09552 -10.76749 -10.64853 -10.52429 -10.41923 -10.33727 -10.07858 -9.97208 -9.59213 -9.25634 -9.01261 -8.29661 -7.88233 -5.95260 -3.96869 2.54986 3.21601 3.36898 3.40541 3.43904 4.39027 4.49844 4.52749 4.63045 4.77323 5.02128 5.10491 5.15969 5.31121 5.39713 5.40530 5.45233 5.53769 5.60800 5.63377 5.69616 5.82617 5.88174 5.97050 5.99127 6.06489 6.10739 6.21475 6.32327 6.37661 6.43511 6.76297 6.80649 6.90024 7.22599 7.50139 7.73405 7.76635 7.90351 8.05714 8.21099 8.49951 9.10162 9.66815 11.16220 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019554 B = 0.004613 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.581545 B = 6068.755524 C = 6835.692300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.517 4.517 8 H 0.054 0.946 9 C 0.023 3.977 10 C -0.103 4.103 11 C 0.054 3.946 12 N -0.661 5.661 13 C 0.129 3.871 14 C -0.103 4.103 15 C 0.471 3.529 16 O -0.470 6.470 17 O -0.531 6.531 18 C -0.149 4.149 19 C -0.121 4.121 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.111 4.111 23 H 0.260 0.740 24 H 0.012 0.988 25 H 0.013 0.987 26 H 0.054 0.946 27 H 0.043 0.957 28 H 0.027 0.973 29 H 0.060 0.940 30 H 0.339 0.661 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.405 0.595 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.081 0.919 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.850 -20.782 0.067 20.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.556 4.556 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.141 4.141 11 C -0.074 4.074 12 N -0.293 5.293 13 C 0.037 3.963 14 C -0.141 4.141 15 C 0.311 3.689 16 O -0.353 6.353 17 O -0.344 6.344 18 C -0.189 4.189 19 C -0.158 4.158 20 C -0.157 4.157 21 C -0.158 4.158 22 C -0.149 4.149 23 H 0.070 0.930 24 H 0.031 0.969 25 H 0.032 0.968 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.045 0.955 29 H 0.079 0.921 30 H 0.160 0.840 31 H 0.117 0.883 32 H 0.123 0.877 33 H 0.263 0.737 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.100 0.900 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.886 -20.595 0.347 20.684 hybrid contribution 0.311 1.090 -0.426 1.211 sum 2.197 -19.505 -0.079 19.629 Atomic orbital electron populations 1.69954 1.06043 1.26591 1.51149 1.25017 0.94834 0.99192 0.95429 0.86665 0.79581 0.83178 0.78626 1.20279 1.21329 1.20253 1.21235 0.93030 0.91104 1.50206 0.92775 1.19054 0.94012 0.91481 0.96885 1.21566 0.99042 0.92856 1.00678 1.22189 0.94449 0.91355 0.99457 1.60781 1.22627 1.00099 1.45835 1.20652 0.92647 0.91806 0.91190 1.21480 0.97510 1.04481 0.90619 1.23180 0.88675 0.74463 0.82594 1.90761 1.20583 1.40391 1.83608 1.84530 1.48815 1.83297 1.17802 1.22254 0.98862 1.02456 0.95295 1.21516 0.98253 0.99150 0.96902 1.21563 0.97097 0.98546 0.98492 1.21524 0.97709 1.02235 0.94299 1.21682 0.98346 0.96284 0.98597 0.93046 0.96914 0.96817 0.92700 0.93808 0.95497 0.92144 0.83975 0.88273 0.87673 0.73711 0.91667 0.91040 0.91708 0.91880 0.92182 0.92232 0.91296 0.92127 0.90048 0.92284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.49 13.29 55.43 0.74 -26.75 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.52 -15.13 9.11 -34.44 -0.31 -15.45 16 8 H 0.05 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.10 -2.24 5.46 -26.73 -0.15 -2.39 16 11 C 0.05 0.94 4.83 -3.82 -0.02 0.92 16 12 N -0.66 -9.86 4.15 -99.95 -0.41 -10.27 16 13 C 0.13 1.53 0.28 -131.59 -0.04 1.49 16 14 C -0.10 -1.17 4.41 -27.88 -0.12 -1.30 16 15 C 0.47 6.29 7.81 36.00 0.28 6.58 16 16 O -0.47 -7.68 13.93 -18.75 -0.26 -7.94 16 17 O -0.53 -5.97 13.42 -39.26 -0.53 -6.50 16 18 C -0.15 -1.60 4.27 -26.72 -0.11 -1.71 16 19 C -0.12 -1.26 5.66 -26.73 -0.15 -1.41 16 20 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 21 C -0.12 -1.21 5.66 -26.74 -0.15 -1.36 16 22 C -0.11 -1.21 4.67 -26.73 -0.12 -1.33 16 23 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 24 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 27 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.03 0.46 6.57 -51.93 -0.34 0.12 16 29 H 0.06 1.07 6.24 -51.93 -0.32 0.75 16 30 H 0.34 4.97 5.27 -39.29 -0.21 4.76 16 31 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.11 1.24 6.65 -51.93 -0.35 0.89 16 33 H 0.40 3.05 9.10 45.56 0.41 3.47 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.85 6.48 -51.93 -0.34 0.51 16 36 H 0.06 0.77 6.83 -51.92 -0.35 0.42 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.78 6.51 -51.93 -0.34 0.44 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 1.04 6.23 -51.93 -0.32 0.72 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 329.65 15.07 4.97 4.97 Total: -1.00 -32.87 329.65 -8.16 -41.03 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -6.35 Total: 3.48 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -1.29 Total: -15.19 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.32 Total: -37.02 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -0.79 Total: -14.44 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.87 -8.16 -41.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833063527.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.999 kcal (2) G-P(sol) polarization free energy of solvation -32.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds