Wall clock time and date at job start Mon Mar 30 2020 00:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46637 * 2 1 4 4 C 1.50692 * 109.47138 * 240.00316 * 2 1 3 5 5 H 1.07995 * 120.00337 * 241.34127 * 4 2 1 6 6 C 1.37880 * 120.00053 * 61.34048 * 4 2 1 7 7 N 1.31518 * 120.00231 * 193.97758 * 6 4 2 8 8 Si 1.86807 * 119.99982 * 13.98144 * 6 4 2 9 9 H 1.48491 * 109.47016 * 84.54499 * 8 6 4 10 10 H 1.48502 * 109.46820 * 204.54832 * 8 6 4 11 11 H 1.48496 * 109.46932 * 324.54675 * 8 6 4 12 12 C 1.53001 * 109.47312 * 119.99835 * 2 1 3 13 13 N 1.46497 * 109.47290 * 300.00278 * 12 2 1 14 14 C 1.34769 * 119.99817 * 179.97438 * 13 12 2 15 15 O 1.21611 * 120.00317 * 359.97438 * 14 13 12 16 16 C 1.47301 * 120.00161 * 180.02562 * 14 13 12 17 17 F 1.35102 * 119.99508 * 359.97438 * 16 14 13 18 18 C 1.33116 * 120.00296 * 180.02562 * 16 14 13 19 19 C 1.51446 * 126.34082 * 359.67789 * 18 16 14 20 20 C 1.54273 * 106.85142 * 180.24784 * 19 18 16 21 21 C 1.54987 * 103.66198 * 23.48858 * 20 19 18 22 22 C 1.51840 * 126.34212 * 180.02562 * 18 16 14 23 23 H 1.09007 * 109.47090 * 309.36239 * 1 2 3 24 24 H 1.08994 * 109.47770 * 69.36772 * 1 2 3 25 25 H 1.09003 * 109.47116 * 189.36965 * 1 2 3 26 26 H 1.08998 * 109.46764 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47537 * 299.99984 * 3 2 1 28 28 H 1.08996 * 109.47140 * 60.00442 * 3 2 1 29 29 H 0.97001 * 120.00247 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.46515 * 180.02562 * 12 2 1 31 31 H 1.08999 * 109.46373 * 60.00379 * 12 2 1 32 32 H 0.97001 * 120.00271 * 359.97438 * 13 12 2 33 33 H 1.09003 * 109.98656 * 299.74007 * 19 18 16 34 34 H 1.08999 * 109.98216 * 61.03528 * 19 18 16 35 35 H 1.08997 * 110.79773 * 264.85760 * 20 19 18 36 36 H 1.09008 * 110.42994 * 141.93462 * 20 19 18 37 37 H 1.08993 * 110.83011 * 204.49243 * 21 20 19 38 38 H 1.08997 * 110.83001 * 80.90974 * 21 20 19 39 39 H 1.08995 * 110.44100 * 274.92071 * 22 18 16 40 40 H 1.09004 * 110.44325 * 37.32125 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6352 -1.6008 -1.1316 6 6 1.7222 -0.2233 -2.4825 7 7 1.9156 -0.9724 -3.5460 8 14 1.0273 1.5008 -2.6684 9 1 2.1414 2.4818 -2.7083 10 1 0.2467 1.5866 -3.9287 11 1 0.1416 1.8043 -1.5158 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0307 2.4454 14 6 1.8769 -0.4914 3.6694 15 8 2.5754 -1.4807 3.7810 16 6 1.3855 0.2025 4.8722 17 9 0.6091 1.3012 4.7482 18 6 1.7071 -0.2523 6.0812 19 6 2.5585 -1.4671 6.3858 20 6 2.6370 -1.5844 7.9221 21 6 1.3741 -0.8311 8.4117 22 6 1.2823 0.3466 7.4103 23 1 -0.3633 0.6518 0.7946 24 1 -0.3634 0.3621 -0.9617 25 1 -0.3633 -1.0140 0.1673 26 1 3.1299 1.4426 -0.0005 27 1 1.6765 1.9564 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6978 -0.6297 -4.4269 30 1 3.1300 -0.7207 1.2494 31 1 1.6767 -1.7489 1.2491 32 1 0.9943 0.7582 2.3565 33 1 2.0971 -2.3605 5.9649 34 1 3.5585 -1.3342 5.9729 35 1 3.5397 -1.1055 8.3012 36 1 2.6008 -2.6306 8.2261 37 1 1.5112 -0.4652 9.4292 38 1 0.4921 -1.4677 8.3430 39 1 1.9618 1.1476 7.7014 40 1 0.2596 0.7191 7.3505 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837888659.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:29 Heat of formation + Delta-G solvation = -71.292163 kcal Electronic energy + Delta-G solvation = -20976.698918 eV Core-core repulsion = 17706.131994 eV Total energy + Delta-G solvation = -3270.566923 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.85288 -39.61655 -38.08502 -36.69442 -33.36928 -31.60240 -31.29065 -29.02447 -26.84306 -26.38213 -25.23658 -24.43938 -21.29916 -20.85746 -19.48841 -18.67737 -17.69606 -16.44422 -16.23569 -16.11231 -15.48695 -15.32651 -14.87434 -14.50771 -14.17758 -13.56975 -13.46879 -13.17343 -12.92201 -12.71254 -12.55480 -12.33090 -12.21442 -12.04825 -11.65504 -11.38023 -11.36119 -11.30323 -10.84588 -10.46829 -10.34155 -10.18455 -10.08069 -9.67582 -9.14217 -9.01787 -8.70088 -8.55484 -8.45852 -6.16247 -4.13788 1.15112 3.23824 3.24759 3.30963 3.31621 3.38368 4.07109 4.34675 4.39813 4.47860 4.76303 4.98034 5.07915 5.14559 5.20085 5.32938 5.51732 5.59116 5.69822 5.75474 5.80725 5.90876 6.01239 6.02723 6.04384 6.12927 6.29603 6.36997 6.47008 6.51449 6.60001 6.67450 6.70014 6.92603 7.18600 7.40253 7.69689 7.80044 8.34695 8.44720 8.88604 9.47615 10.96717 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.042568 B = 0.004115 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.613995 B = 6802.904515 C = 7220.003717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.028 3.972 3 C -0.149 4.149 4 C -0.514 4.514 5 H 0.077 0.923 6 C 0.076 3.924 7 N -0.891 5.891 8 Si 0.885 3.115 9 H -0.285 1.285 10 H -0.305 1.305 11 H -0.249 1.249 12 C 0.141 3.859 13 N -0.711 5.711 14 C 0.540 3.460 15 O -0.528 6.528 16 C -0.005 4.005 17 F -0.139 7.139 18 C -0.084 4.084 19 C -0.078 4.078 20 C -0.128 4.128 21 C -0.123 4.123 22 C -0.095 4.095 23 H 0.022 0.978 24 H 0.057 0.943 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.042 0.958 28 H 0.030 0.970 29 H 0.265 0.735 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.401 0.599 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.080 3.561 21.328 21.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.027 3.973 3 C -0.206 4.206 4 C -0.552 4.552 5 H 0.095 0.905 6 C -0.127 4.127 7 N -0.527 5.527 8 Si 0.717 3.283 9 H -0.213 1.213 10 H -0.233 1.233 11 H -0.175 1.175 12 C 0.019 3.981 13 N -0.361 5.361 14 C 0.325 3.675 15 O -0.407 6.407 16 C -0.027 4.027 17 F -0.118 7.118 18 C -0.088 4.088 19 C -0.115 4.115 20 C -0.166 4.166 21 C -0.160 4.160 22 C -0.132 4.132 23 H 0.041 0.959 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.236 0.764 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.613 2.853 21.136 21.389 hybrid contribution -0.776 1.680 -0.478 1.911 sum -2.389 4.533 20.658 21.284 Atomic orbital electron populations 1.22305 0.97773 0.99900 1.00072 1.18733 0.92601 0.92310 0.93688 1.22370 1.01227 0.98286 0.98685 1.20696 1.34164 1.12357 0.87939 0.90487 1.24967 0.94624 0.97302 0.95770 1.69949 1.48115 1.35909 0.98734 0.87302 0.79398 0.85542 0.76046 1.21309 1.23346 1.17487 1.21600 0.98775 0.95899 0.81780 1.46243 1.52187 1.31760 1.05930 1.18135 0.81508 0.84647 0.83205 1.90802 1.38207 1.25523 1.86205 1.19095 1.00732 0.88909 0.94008 1.91459 1.72730 1.50925 1.96655 1.22954 0.95715 0.97276 0.92832 1.21129 0.99913 0.95274 0.95145 1.22482 0.98028 1.00845 0.95227 1.22516 0.98660 0.96519 0.98304 1.21473 1.02104 0.98401 0.91173 0.95890 0.92426 0.93353 0.92724 0.93949 0.95133 0.92523 0.91614 0.91504 0.76354 0.89128 0.89266 0.91235 0.90974 0.90906 0.90998 0.89386 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 7.53 37.16 0.28 -2.68 16 2 C 0.03 0.61 0.50 -155.66 -0.08 0.53 16 3 C -0.15 -3.06 7.52 37.16 0.28 -2.78 16 4 C -0.51 -13.78 8.62 -34.44 -0.30 -14.07 16 5 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 6 C 0.08 2.12 5.32 -17.82 -0.09 2.02 16 7 N -0.89 -26.59 13.96 55.43 0.77 -25.82 16 8 Si 0.88 21.16 22.79 -169.99 -3.87 17.29 16 9 H -0.29 -6.80 7.10 56.52 0.40 -6.40 16 10 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 11 H -0.25 -5.45 4.65 56.52 0.26 -5.18 16 12 C 0.14 2.84 4.49 -4.04 -0.02 2.82 16 13 N -0.71 -12.25 5.00 -61.43 -0.31 -12.55 16 14 C 0.54 9.11 7.77 -12.58 -0.10 9.01 16 15 O -0.53 -10.00 14.12 5.27 0.07 -9.93 16 16 C -0.01 -0.07 7.42 -37.68 -0.28 -0.35 16 17 F -0.14 -1.92 16.52 2.25 0.04 -1.88 16 18 C -0.08 -1.02 6.16 -100.20 -0.62 -1.64 16 19 C -0.08 -0.88 4.81 -26.85 -0.13 -1.01 16 20 C -0.13 -1.05 6.88 -25.02 -0.17 -1.22 16 21 C -0.12 -0.92 6.94 -24.70 -0.17 -1.09 16 22 C -0.09 -0.85 6.44 -26.33 -0.17 -1.02 16 23 H 0.02 0.40 7.13 -51.93 -0.37 0.03 16 24 H 0.06 1.26 4.30 -51.93 -0.22 1.04 16 25 H 0.05 0.98 8.12 -51.93 -0.42 0.56 16 26 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.04 0.92 2.25 -51.93 -0.12 0.80 16 28 H 0.03 0.53 6.86 -51.93 -0.36 0.17 16 29 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 32 H 0.40 6.36 5.81 -40.82 -0.24 6.13 16 33 H 0.09 1.14 7.67 -51.93 -0.40 0.74 16 34 H 0.09 1.11 7.69 -51.93 -0.40 0.71 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 311.06 15.07 4.69 4.69 Total: -1.00 -29.51 311.06 -6.19 -35.71 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -6.02 Total: 3.99 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -1.57 Total: -11.49 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.47 Total: -38.37 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.07 Total: -9.93 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -3.87 Total: 17.29 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.51 -6.19 -35.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837888659.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.584 kcal (2) G-P(sol) polarization free energy of solvation -29.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds