Wall clock time and date at job start Mon Mar 30 2020 01:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47075 * 184.47599 * 3 2 1 5 5 C 1.36935 * 119.99588 * 264.66035 * 4 3 2 6 6 H 1.07999 * 120.00108 * 195.87036 * 5 4 3 7 7 C 1.38816 * 119.99988 * 15.87014 * 5 4 3 8 8 N 1.31618 * 120.00269 * 20.11776 * 7 5 4 9 9 Si 1.86803 * 119.99762 * 200.11181 * 7 5 4 10 10 H 1.48502 * 109.47219 * 60.00283 * 9 7 5 11 11 H 1.48507 * 109.46877 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47259 * 300.00045 * 9 7 5 13 13 C 1.46490 * 120.00231 * 84.66010 * 4 3 2 14 14 C 1.53002 * 109.47390 * 90.00187 * 13 4 3 15 15 C 1.52999 * 109.47199 * 175.69169 * 14 13 4 16 16 H 1.09003 * 110.34832 * 57.21901 * 15 14 13 17 17 C 1.54338 * 110.30381 * 295.09002 * 15 14 13 18 18 C 1.54349 * 102.39054 * 214.73167 * 17 15 14 19 19 C 1.51361 * 105.17118 * 26.34162 * 18 17 15 20 20 C 1.38502 * 130.39465 * 162.85144 * 19 18 17 21 21 C 1.38096 * 120.21935 * 180.02562 * 20 19 18 22 22 C 1.38254 * 119.93496 * 359.96706 * 21 20 19 23 23 C 1.38103 * 119.93345 * 0.02562 * 22 21 20 24 24 C 1.38211 * 109.76087 * 342.81819 * 19 18 17 25 25 H 4.40645 * 5.51370 * 180.02562 * 4 1 2 26 26 H 1.09000 * 109.47405 * 64.47366 * 3 2 1 27 27 H 1.09003 * 109.47243 * 304.46779 * 3 2 1 28 28 H 0.97001 * 120.00203 * 179.97438 * 8 7 5 29 29 H 1.09003 * 109.47359 * 329.99962 * 13 4 3 30 30 H 1.09004 * 109.47390 * 210.00390 * 13 4 3 31 31 H 1.09000 * 109.46908 * 55.69090 * 14 13 4 32 32 H 1.09001 * 109.46869 * 295.69618 * 14 13 4 33 33 H 1.09004 * 110.82521 * 96.50351 * 17 15 14 34 34 H 1.08999 * 110.82189 * 332.95333 * 17 15 14 35 35 H 1.08997 * 110.30306 * 145.27053 * 18 17 15 36 36 H 1.08999 * 110.29893 * 267.31989 * 18 17 15 37 37 H 1.08003 * 119.88794 * 359.94546 * 20 19 18 38 38 H 1.07999 * 120.03624 * 179.97438 * 21 20 19 39 39 H 1.07998 * 120.03194 * 180.02562 * 22 21 20 40 40 H 1.07997 * 119.89171 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3779 0.1078 5 6 3.4656 2.0770 -1.0219 6 1 4.0566 2.9778 -0.9454 7 6 3.0425 1.6280 -2.2654 8 7 2.0262 0.7964 -2.3540 9 14 3.9156 2.2042 -3.8131 10 1 5.3442 1.8032 -3.7540 11 1 3.2760 1.5850 -5.0018 12 1 3.8202 3.6826 -3.9140 13 6 3.2663 2.0072 1.4240 14 6 4.6668 1.7391 1.9788 15 6 4.8421 2.4850 3.3031 16 1 4.0714 2.1837 4.0127 17 6 4.7890 4.0098 3.0701 18 6 5.7953 4.5395 4.1137 19 6 6.7649 3.4001 4.3431 20 6 8.0264 3.3963 4.9148 21 6 8.7385 2.2177 5.0195 22 6 8.1910 1.0370 4.5530 23 6 6.9332 1.0387 3.9827 24 6 6.2173 2.2196 3.8773 25 1 -1.0502 -0.0005 0.0002 26 1 3.0095 -0.4420 -0.9273 27 1 3.0096 -0.5808 0.8473 28 1 1.7303 0.4829 -3.2230 29 1 2.5211 1.5914 2.1023 30 1 3.1123 3.0822 1.3301 31 1 5.4131 2.0867 1.2644 32 1 4.7932 0.6693 2.1447 33 1 3.7888 4.3970 3.2649 34 1 5.1120 4.2587 2.0593 35 1 6.3211 5.4109 3.7237 36 1 5.2807 4.7926 5.0407 37 1 8.4551 4.3184 5.2787 38 1 9.7221 2.2183 5.4654 39 1 8.7463 0.1144 4.6344 40 1 6.5059 0.1160 3.6190 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852009635.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:09 Heat of formation + Delta-G solvation = 94.447035 kcal Electronic energy + Delta-G solvation = -19802.245681 eV Core-core repulsion = 16969.634973 eV Total energy + Delta-G solvation = -2832.610708 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.11596 -36.67057 -35.50658 -32.58993 -31.49279 -31.09151 -29.46138 -28.60180 -26.26624 -25.71965 -23.12872 -22.55808 -21.06113 -20.57203 -19.53216 -17.42783 -16.45365 -16.17458 -15.24846 -15.08581 -14.99112 -14.63878 -13.96339 -13.64701 -13.28948 -13.16932 -12.86023 -12.81423 -12.54651 -11.99246 -11.65159 -11.40505 -11.26168 -11.20259 -10.91985 -10.80954 -10.72657 -10.55010 -10.43411 -10.27057 -9.92011 -9.85906 -8.87645 -8.78316 -8.71399 -8.41919 -8.32827 -6.93074 -5.73625 -3.14319 1.44003 1.47705 3.39974 3.46599 3.47491 3.83716 4.21218 4.43197 4.52812 4.57280 4.69715 5.04663 5.07192 5.15565 5.20738 5.39136 5.41494 5.56832 5.62188 5.72733 5.73747 5.79685 5.88596 6.00636 6.07943 6.10465 6.21179 6.24056 6.38867 6.42182 6.49144 6.56025 6.62454 6.75265 6.80518 6.89404 7.05591 7.09675 7.34196 7.48601 7.78067 8.34074 9.16288 9.24175 9.83789 10.29556 11.30171 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020397 B = 0.004590 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.434526 B = 6098.227643 C = 6530.227335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 C -0.091 4.091 3 C 0.267 3.733 4 N -0.590 5.590 5 C -0.258 4.258 6 H 0.074 0.926 7 C 0.000 4.000 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.285 1.285 13 C 0.150 3.850 14 C -0.126 4.126 15 C -0.050 4.050 16 H 0.082 0.918 17 C -0.115 4.115 18 C -0.083 4.083 19 C -0.100 4.100 20 C -0.112 4.112 21 C -0.128 4.128 22 C -0.124 4.124 23 C -0.104 4.104 24 C -0.078 4.078 25 H 0.189 0.811 26 H 0.099 0.901 27 H 0.033 0.967 28 H 0.254 0.746 29 H 0.035 0.965 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.923 2.698 14.240 17.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.328 4.328 2 C -0.094 4.094 3 C 0.141 3.859 4 N -0.309 5.309 5 C -0.387 4.387 6 H 0.092 0.908 7 C -0.198 4.198 8 N -0.538 5.538 9 Si 0.729 3.271 10 H -0.211 1.211 11 H -0.217 1.217 12 H -0.211 1.211 13 C 0.023 3.977 14 C -0.166 4.166 15 C -0.069 4.069 16 H 0.100 0.900 17 C -0.152 4.152 18 C -0.120 4.120 19 C -0.100 4.100 20 C -0.130 4.130 21 C -0.146 4.146 22 C -0.142 4.142 23 C -0.122 4.122 24 C -0.078 4.078 25 H 0.207 0.793 26 H 0.117 0.883 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 8.868 2.650 14.056 16.829 hybrid contribution 0.151 0.304 -0.995 1.051 sum 9.019 2.954 13.061 16.144 Atomic orbital electron populations 1.24189 0.95352 1.04848 1.08413 1.24416 0.95386 0.96022 0.93591 1.17846 0.82683 0.85845 0.99512 1.44047 1.75007 1.10452 1.01425 1.19165 1.27025 1.08339 0.84208 0.90837 1.24876 0.96893 1.00203 0.97829 1.70098 1.23799 1.36614 1.23294 0.86409 0.79505 0.78129 0.83016 1.21113 1.21733 1.21087 1.20800 0.92952 0.96988 0.86978 1.22237 1.01194 0.99136 0.94002 1.20755 0.92618 0.95708 0.97796 0.90030 1.22397 0.99011 0.94480 0.99324 1.21075 0.95324 0.95990 0.99568 1.20663 0.94635 0.96108 0.98600 1.20578 0.93986 0.98038 1.00442 1.20959 0.99730 0.92718 1.01226 1.21014 0.95655 0.98038 0.99457 1.20696 0.94491 0.97645 0.99405 1.20733 0.96532 0.93172 0.97372 0.79333 0.88293 0.94900 0.93552 0.94695 0.93305 0.91646 0.92759 0.90573 0.90367 0.91062 0.90606 0.86708 0.86353 0.86221 0.86166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -7.21 19.25 29.55 0.57 -6.64 16 2 C -0.09 -2.27 11.63 -37.12 -0.43 -2.70 16 3 C 0.27 6.41 5.41 -6.83 -0.04 6.37 16 4 N -0.59 -14.36 2.49 -176.57 -0.44 -14.80 16 5 C -0.26 -6.91 9.68 -15.06 -0.15 -7.06 16 6 H 0.07 1.93 7.91 -52.49 -0.41 1.51 16 7 C 0.00 0.01 4.92 -17.43 -0.09 -0.08 16 8 N -0.89 -25.58 9.32 55.49 0.52 -25.06 16 9 Si 0.90 21.65 29.60 -169.99 -5.03 16.62 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.15 2.98 5.57 -4.05 -0.02 2.96 16 14 C -0.13 -2.13 4.81 -26.73 -0.13 -2.26 16 15 C -0.05 -0.71 2.92 -90.74 -0.27 -0.97 16 16 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 17 C -0.11 -1.49 5.56 -25.32 -0.14 -1.63 16 18 C -0.08 -0.95 6.77 -26.85 -0.18 -1.13 16 19 C -0.10 -1.30 6.14 -104.21 -0.64 -1.94 16 20 C -0.11 -1.32 10.04 -39.54 -0.40 -1.72 16 21 C -0.13 -1.43 10.05 -39.63 -0.40 -1.83 16 22 C -0.12 -1.45 10.05 -39.62 -0.40 -1.85 16 23 C -0.10 -1.39 9.73 -39.53 -0.38 -1.77 16 24 C -0.08 -1.09 5.61 -104.21 -0.58 -1.68 16 25 H 0.19 3.69 7.80 -54.08 -0.42 3.27 16 26 H 0.10 2.60 6.30 -51.93 -0.33 2.27 16 27 H 0.03 0.70 8.11 -51.93 -0.42 0.28 16 28 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.03 0.68 8.07 -51.93 -0.42 0.26 16 30 H 0.05 0.97 7.19 -51.93 -0.37 0.60 16 31 H 0.06 1.23 8.09 -51.93 -0.42 0.81 16 32 H 0.05 0.92 7.81 -51.93 -0.41 0.51 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.08 1.11 7.88 -51.93 -0.41 0.70 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.11 1.10 8.06 -52.48 -0.42 0.68 16 38 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.12 1.51 7.80 -52.49 -0.41 1.10 16 LS Contribution 332.87 15.07 5.02 5.02 Total: -1.00 -29.96 332.87 -9.73 -39.68 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -6.12 Total: 2.47 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: -3.67 Total: -23.92 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.08 Total: -39.86 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.96 -9.73 -39.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852009635.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.129 kcal (2) G-P(sol) polarization free energy of solvation -29.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds