Wall clock time and date at job start Mon Mar 30 2020 01:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47075 * 184.47599 * 3 2 1 5 5 C 1.36935 * 119.99588 * 264.66035 * 4 3 2 6 6 H 1.07999 * 120.00108 * 195.87036 * 5 4 3 7 7 C 1.38816 * 119.99988 * 15.87014 * 5 4 3 8 8 N 1.31618 * 120.00269 * 20.11776 * 7 5 4 9 9 Si 1.86803 * 119.99762 * 200.11181 * 7 5 4 10 10 H 1.48502 * 109.47219 * 60.00283 * 9 7 5 11 11 H 1.48507 * 109.46877 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47259 * 300.00045 * 9 7 5 13 13 C 1.46490 * 120.00231 * 84.66010 * 4 3 2 14 14 C 1.53002 * 109.47390 * 90.00187 * 13 4 3 15 15 C 1.52999 * 109.47199 * 175.69169 * 14 13 4 16 16 H 1.09003 * 110.34832 * 57.21901 * 15 14 13 17 17 C 1.54338 * 110.30381 * 295.09002 * 15 14 13 18 18 C 1.54349 * 102.39054 * 214.73167 * 17 15 14 19 19 C 1.51361 * 105.17118 * 26.34162 * 18 17 15 20 20 C 1.38502 * 130.39465 * 162.85144 * 19 18 17 21 21 C 1.38096 * 120.21935 * 180.02562 * 20 19 18 22 22 C 1.38254 * 119.93496 * 359.96706 * 21 20 19 23 23 C 1.38103 * 119.93345 * 0.02562 * 22 21 20 24 24 C 1.38211 * 109.76087 * 342.81819 * 19 18 17 25 25 H 4.40645 * 5.51370 * 180.02562 * 4 1 2 26 26 H 1.09000 * 109.47405 * 64.47366 * 3 2 1 27 27 H 1.09003 * 109.47243 * 304.46779 * 3 2 1 28 28 H 0.97001 * 120.00203 * 179.97438 * 8 7 5 29 29 H 1.09003 * 109.47359 * 329.99962 * 13 4 3 30 30 H 1.09004 * 109.47390 * 210.00390 * 13 4 3 31 31 H 1.09000 * 109.46908 * 55.69090 * 14 13 4 32 32 H 1.09001 * 109.46869 * 295.69618 * 14 13 4 33 33 H 1.09004 * 110.82521 * 96.50351 * 17 15 14 34 34 H 1.08999 * 110.82189 * 332.95333 * 17 15 14 35 35 H 1.08997 * 110.30306 * 145.27053 * 18 17 15 36 36 H 1.08999 * 110.29893 * 267.31989 * 18 17 15 37 37 H 1.08003 * 119.88794 * 359.94546 * 20 19 18 38 38 H 1.07999 * 120.03624 * 179.97438 * 21 20 19 39 39 H 1.07998 * 120.03194 * 180.02562 * 22 21 20 40 40 H 1.07997 * 119.89171 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3779 0.1078 5 6 3.4656 2.0770 -1.0219 6 1 4.0566 2.9778 -0.9454 7 6 3.0425 1.6280 -2.2654 8 7 2.0262 0.7964 -2.3540 9 14 3.9156 2.2042 -3.8131 10 1 5.3442 1.8032 -3.7540 11 1 3.2760 1.5850 -5.0018 12 1 3.8202 3.6826 -3.9140 13 6 3.2663 2.0072 1.4240 14 6 4.6668 1.7391 1.9788 15 6 4.8421 2.4850 3.3031 16 1 4.0714 2.1837 4.0127 17 6 4.7890 4.0098 3.0701 18 6 5.7953 4.5395 4.1137 19 6 6.7649 3.4001 4.3431 20 6 8.0264 3.3963 4.9148 21 6 8.7385 2.2177 5.0195 22 6 8.1910 1.0370 4.5530 23 6 6.9332 1.0387 3.9827 24 6 6.2173 2.2196 3.8773 25 1 -1.0502 -0.0005 0.0002 26 1 3.0095 -0.4420 -0.9273 27 1 3.0096 -0.5808 0.8473 28 1 1.7303 0.4829 -3.2230 29 1 2.5211 1.5914 2.1023 30 1 3.1123 3.0822 1.3301 31 1 5.4131 2.0867 1.2644 32 1 4.7932 0.6693 2.1447 33 1 3.7888 4.3970 3.2649 34 1 5.1120 4.2587 2.0593 35 1 6.3211 5.4109 3.7237 36 1 5.2807 4.7926 5.0407 37 1 8.4551 4.3184 5.2787 38 1 9.7221 2.2183 5.4654 39 1 8.7463 0.1144 4.6344 40 1 6.5059 0.1160 3.6190 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852009635.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:08 Heat of formation + Delta-G solvation = 81.833991 kcal Electronic energy + Delta-G solvation = -19802.792623 eV Core-core repulsion = 16969.634973 eV Total energy + Delta-G solvation = -2833.157650 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.09600 -38.25512 -36.78794 -34.02545 -33.43568 -32.45815 -30.82678 -29.58886 -28.02728 -27.31426 -24.67666 -23.51998 -22.52367 -21.64973 -20.73200 -19.34675 -18.10688 -17.41996 -16.90605 -16.20229 -16.01547 -15.82410 -15.57792 -15.32502 -14.85201 -14.61087 -14.08917 -13.88813 -13.52105 -13.48009 -13.15666 -13.07383 -12.81225 -12.65693 -12.40831 -12.30000 -12.08878 -11.92438 -11.82684 -11.67575 -11.51572 -11.29839 -10.76019 -10.71595 -10.28680 -9.65931 -9.36363 -8.88204 -7.80750 -5.22009 0.51503 0.54121 1.47161 1.49988 1.56037 2.33035 2.52690 2.60279 2.90880 3.30200 3.57051 3.66976 3.81151 4.09456 4.12871 4.18985 4.23859 4.27046 4.41875 4.47211 4.65786 4.68114 4.73208 4.83460 4.90206 4.93208 4.98884 5.02255 5.11839 5.23400 5.27991 5.33378 5.37425 5.46695 5.57790 5.63116 5.65452 5.67519 5.69940 5.84352 6.18862 6.31667 7.13281 7.35357 7.87002 8.29042 9.20768 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020397 B = 0.004590 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.434526 B = 6098.227643 C = 6530.227335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 C -0.131 4.131 3 C 0.269 3.731 4 N -0.604 5.604 5 C -0.263 4.263 6 H 0.073 0.927 7 C -0.049 4.049 8 N -0.918 5.918 9 Si 0.959 3.041 10 H -0.281 1.281 11 H -0.297 1.297 12 H -0.280 1.280 13 C 0.151 3.849 14 C -0.106 4.106 15 C -0.044 4.044 16 H 0.088 0.912 17 C -0.115 4.115 18 C -0.076 4.076 19 C -0.113 4.113 20 C -0.119 4.119 21 C -0.128 4.128 22 C -0.130 4.130 23 C -0.123 4.123 24 C -0.103 4.103 25 H 0.223 0.777 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.246 0.754 29 H 0.041 0.959 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.138 0.862 38 H 0.147 0.853 39 H 0.141 0.859 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.953 3.556 15.692 18.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.317 4.317 2 C -0.134 4.134 3 C 0.144 3.856 4 N -0.325 5.325 5 C -0.392 4.392 6 H 0.091 0.909 7 C -0.244 4.244 8 N -0.564 5.564 9 Si 0.788 3.212 10 H -0.208 1.208 11 H -0.223 1.223 12 H -0.206 1.206 13 C 0.026 3.974 14 C -0.146 4.146 15 C -0.063 4.063 16 H 0.106 0.894 17 C -0.153 4.153 18 C -0.113 4.113 19 C -0.113 4.113 20 C -0.137 4.137 21 C -0.145 4.145 22 C -0.147 4.147 23 C -0.141 4.141 24 C -0.103 4.103 25 H 0.239 0.761 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.104 0.896 34 H 0.079 0.921 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.156 0.844 38 H 0.165 0.835 39 H 0.158 0.842 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 9.915 3.522 15.540 18.767 hybrid contribution -0.157 0.023 -1.371 1.380 sum 9.758 3.544 14.169 17.565 Atomic orbital electron populations 1.25032 0.96392 1.03402 1.06911 1.24786 0.96232 0.97430 0.94987 1.17740 0.82797 0.85983 0.99098 1.44257 1.75174 1.10694 1.02334 1.19422 1.26289 1.08233 0.85293 0.90927 1.25523 0.97652 1.01010 1.00249 1.70266 1.25059 1.38031 1.23038 0.85468 0.78387 0.77683 0.79656 1.20751 1.22344 1.20617 1.20916 0.94695 0.96490 0.85323 1.21944 0.98346 0.99309 0.95021 1.20668 0.93513 0.96098 0.96026 0.89423 1.22377 1.00137 0.93754 0.99013 1.21059 0.94746 0.95819 0.99688 1.20923 0.95463 0.96052 0.98819 1.20923 0.93505 0.99339 0.99891 1.21355 1.00757 0.92173 1.00255 1.21322 0.95157 0.99424 0.98846 1.20873 0.95491 0.97511 1.00269 1.20788 0.96562 0.94119 0.98843 0.76058 0.91092 0.92452 0.94454 0.94093 0.93585 0.93897 0.93047 0.89616 0.92145 0.89935 0.88940 0.84403 0.83528 0.84156 0.86427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -13.65 19.25 74.32 1.43 -12.22 16 2 C -0.13 -6.55 11.63 31.12 0.36 -6.19 16 3 C 0.27 13.16 5.41 84.57 0.46 13.62 16 4 N -0.60 -29.81 2.49 -712.55 -1.78 -31.59 16 5 C -0.26 -14.23 9.68 84.03 0.81 -13.42 16 6 H 0.07 3.86 7.91 -2.91 -0.02 3.83 16 7 C -0.05 -2.70 4.92 84.86 0.42 -2.28 16 8 N -0.92 -53.43 9.32 21.65 0.20 -53.23 16 9 Si 0.96 45.12 29.60 68.60 2.03 47.15 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 11 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 C 0.15 6.05 5.57 86.38 0.48 6.53 16 14 C -0.11 -3.65 4.81 30.59 0.15 -3.50 16 15 C -0.04 -1.23 2.92 -10.87 -0.03 -1.26 16 16 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 17 C -0.12 -2.90 5.56 31.51 0.18 -2.73 16 18 C -0.08 -1.61 6.77 30.52 0.21 -1.40 16 19 C -0.11 -2.74 6.14 -19.60 -0.12 -2.86 16 20 C -0.12 -2.48 10.04 22.30 0.22 -2.26 16 21 C -0.13 -2.50 10.05 22.24 0.22 -2.27 16 22 C -0.13 -2.81 10.05 22.24 0.22 -2.58 16 23 C -0.12 -3.20 9.73 22.30 0.22 -2.99 16 24 C -0.10 -2.81 5.61 -19.60 -0.11 -2.92 16 25 H 0.22 8.17 7.80 -4.41 -0.03 8.14 16 26 H 0.07 3.85 6.30 -2.39 -0.02 3.84 16 27 H 0.06 2.45 8.11 -2.39 -0.02 2.43 16 28 H 0.25 14.18 8.31 -92.71 -0.77 13.40 16 29 H 0.04 1.58 8.07 -2.39 -0.02 1.56 16 30 H 0.05 1.85 7.19 -2.38 -0.02 1.83 16 31 H 0.04 1.65 8.09 -2.39 -0.02 1.63 16 32 H 0.05 1.76 7.81 -2.39 -0.02 1.74 16 33 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.06 1.72 7.88 -2.39 -0.02 1.70 16 35 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 38 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 39 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 40 H 0.12 2.97 7.80 -2.91 -0.02 2.95 16 Total: -1.00 -63.95 332.87 6.57 -57.38 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.99 Total: 19.01 kcal Atomic # 6 Polarization: -43.84 SS G_CDS: 5.12 Total: -38.72 kcal Atomic # 7 Polarization: -83.24 SS G_CDS: -1.57 Total: -84.81 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -63.95 6.57 -57.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852009635.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.213 kcal (2) G-P(sol) polarization free energy of solvation -63.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds