Wall clock time and date at job start Mon Mar 30 2020 01:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00074 * 2 1 4 4 H 1.48491 * 109.47198 * 270.00044 * 3 2 1 5 5 H 1.48505 * 109.47312 * 29.99950 * 3 2 1 6 6 H 1.48499 * 109.47221 * 149.99713 * 3 2 1 7 7 C 1.37877 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00492 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99938 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.53326 * 299.90188 * 9 7 2 11 11 C 1.53120 * 109.50132 * 59.99803 * 9 7 2 12 12 C 1.53123 * 109.21163 * 177.62791 * 11 9 7 13 13 C 1.53037 * 109.27398 * 302.31409 * 12 11 9 14 14 N 1.46848 * 109.52381 * 59.18254 * 13 12 11 15 15 C 1.46900 * 110.99918 * 174.15634 * 14 13 12 16 16 C 1.53006 * 109.47181 * 66.04184 * 15 14 13 17 17 C 1.52996 * 109.47274 * 179.97438 * 16 15 14 18 18 O 1.42961 * 109.47346 * 295.00193 * 17 16 15 19 19 C 1.43093 * 113.77369 * 181.20323 * 18 17 16 20 20 C 1.53264 * 108.93789 * 57.97002 * 19 18 17 21 21 C 1.53259 * 108.84558 * 305.47402 * 20 19 18 22 22 O 1.42968 * 109.47162 * 175.00155 * 17 16 15 23 23 C 1.46845 * 111.19518 * 298.25146 * 14 13 12 24 24 H 0.97002 * 120.00547 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.52427 * 57.69065 * 11 9 7 26 26 H 1.08995 * 109.52208 * 297.56384 * 11 9 7 27 27 H 1.08996 * 109.50077 * 62.25431 * 12 11 9 28 28 H 1.08993 * 109.50100 * 182.33643 * 12 11 9 29 29 H 1.09006 * 109.45986 * 179.19524 * 13 12 11 30 30 H 1.08996 * 109.46322 * 299.16841 * 13 12 11 31 31 H 1.08996 * 109.47225 * 186.04271 * 15 14 13 32 32 H 1.09007 * 109.47465 * 306.04862 * 15 14 13 33 33 H 1.08996 * 109.47113 * 300.00157 * 16 15 14 34 34 H 1.09002 * 109.46981 * 59.99663 * 16 15 14 35 35 H 1.09001 * 109.46866 * 55.00181 * 17 16 15 36 36 H 1.08998 * 109.55730 * 298.13857 * 19 18 17 37 37 H 1.08998 * 109.65077 * 177.85810 * 19 18 17 38 38 H 1.09005 * 109.57232 * 185.67092 * 20 19 18 39 39 H 1.08993 * 109.68151 * 65.35265 * 20 19 18 40 40 H 1.08993 * 109.56129 * 294.68987 * 21 20 19 41 41 H 1.09001 * 109.55706 * 174.36297 * 21 20 19 42 42 H 1.09003 * 109.45905 * 181.76430 * 23 14 13 43 43 H 1.09002 * 109.46166 * 301.73872 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6250 -2.5586 0.8908 11 6 0.3709 -2.5813 -1.2498 12 6 -0.3460 -3.9341 -1.2733 13 6 0.6931 -5.0572 -1.2416 14 7 1.5091 -4.9365 -0.0266 15 6 2.4255 -6.0768 0.1073 16 6 3.4527 -6.0416 -1.0262 17 6 4.4075 -7.2288 -0.8863 18 8 5.1671 -7.0903 0.3169 19 6 6.1136 -8.1429 0.5260 20 6 7.0707 -8.1960 -0.6699 21 6 6.2484 -8.3270 -1.9566 22 8 5.2934 -7.2626 -2.0079 23 6 2.2440 -3.6654 -0.0047 24 1 -0.4851 0.8400 0.0004 25 1 0.9923 -2.4829 -2.1398 26 1 -0.3663 -1.7787 -1.2296 27 1 -0.9972 -4.0161 -0.4030 28 1 -0.9418 -4.0144 -2.1825 29 1 0.1855 -6.0218 -1.2438 30 1 1.3352 -4.9827 -2.1192 31 1 2.9405 -6.0184 1.0662 32 1 1.8588 -7.0066 0.0552 33 1 2.9377 -6.1000 -1.9850 34 1 4.0193 -5.1119 -0.9742 35 1 3.8332 -8.1545 -0.8488 36 1 5.5881 -9.0937 0.6152 37 1 6.6793 -7.9514 1.4378 38 1 7.7323 -9.0565 -0.5702 39 1 7.6633 -7.2820 -0.7067 40 1 5.7281 -9.2847 -1.9613 41 1 6.9103 -8.2652 -2.8205 42 1 2.8629 -3.6192 0.8914 43 1 2.8786 -3.5975 -0.8883 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852319573.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:42 Heat of formation + Delta-G solvation = -105.666329 kcal Electronic energy + Delta-G solvation = -21601.738590 eV Core-core repulsion = 18453.141396 eV Total energy + Delta-G solvation = -3148.597194 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.10831 -38.36394 -35.79850 -34.53488 -33.01758 -31.85888 -29.83332 -29.43675 -26.20214 -25.13384 -24.88118 -22.82318 -21.50514 -21.29172 -20.72019 -18.29327 -17.44832 -16.72051 -16.33726 -16.13073 -15.19329 -14.93246 -14.86570 -14.43015 -14.14393 -13.66176 -13.49792 -13.45098 -12.85408 -12.64711 -12.13463 -12.04687 -11.90789 -11.74135 -11.49025 -11.29573 -11.03801 -10.94380 -10.85329 -10.59506 -10.35324 -10.18223 -9.97362 -9.82356 -9.73905 -9.39794 -8.96321 -8.63246 -8.24026 -7.57653 -5.91142 -3.96820 3.35535 3.42024 3.45420 3.46078 3.52874 4.45678 4.45962 4.47068 4.63983 4.71582 4.84096 5.04363 5.06961 5.19296 5.34144 5.38820 5.42534 5.51217 5.55062 5.72114 5.77247 5.87555 5.91876 6.04212 6.16988 6.38265 6.38906 6.51860 6.61288 6.75885 6.78848 6.84713 7.04441 7.06223 7.28949 7.47145 7.73398 7.82225 7.89717 8.16056 8.24570 8.55707 9.07381 9.67165 11.14887 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.023629 B = 0.004295 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.716271 B = 6517.675867 C = 7216.135869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.512 4.512 8 H 0.053 0.947 9 C 0.054 3.946 10 H 0.034 0.966 11 C -0.111 4.111 12 C -0.118 4.118 13 C 0.059 3.941 14 N -0.533 5.533 15 C 0.063 3.937 16 C -0.145 4.145 17 C 0.254 3.746 18 O -0.385 6.385 19 C 0.056 3.944 20 C -0.193 4.193 21 C 0.056 3.944 22 O -0.393 6.393 23 C 0.064 3.936 24 H 0.259 0.741 25 H 0.029 0.971 26 H 0.090 0.910 27 H 0.060 0.940 28 H 0.045 0.955 29 H 0.056 0.944 30 H 0.026 0.974 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.051 0.949 41 H 0.097 0.903 42 H 0.059 0.941 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.977 -18.140 -2.373 20.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.551 4.551 8 H 0.072 0.928 9 C 0.035 3.965 10 H 0.052 0.948 11 C -0.149 4.149 12 C -0.156 4.156 13 C -0.069 4.069 14 N -0.256 5.256 15 C -0.066 4.066 16 C -0.184 4.184 17 C 0.159 3.841 18 O -0.305 6.305 19 C -0.021 4.021 20 C -0.231 4.231 21 C -0.020 4.020 22 O -0.313 6.313 23 C -0.063 4.063 24 H 0.069 0.931 25 H 0.048 0.952 26 H 0.109 0.891 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.044 0.956 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.117 0.883 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.069 0.931 41 H 0.115 0.885 42 H 0.078 0.922 43 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 8.445 -17.716 -1.978 19.725 hybrid contribution 1.271 0.404 -0.786 1.548 sum 9.716 -17.312 -2.764 20.044 Atomic orbital electron populations 1.69892 1.05827 1.26225 1.50890 1.24925 0.94810 0.98896 0.95210 0.86638 0.79923 0.83697 0.77989 1.20824 1.21291 1.19965 1.21163 0.92853 0.90695 1.50416 0.92844 1.18701 0.92649 0.90364 0.94793 0.94829 1.21654 1.00030 0.94714 0.98500 1.21677 0.97206 0.96538 1.00139 1.22070 0.95582 0.98642 0.90634 1.62274 1.23186 1.02548 1.37567 1.22108 0.92188 0.94769 0.97514 1.22309 0.96711 0.97511 1.01911 1.23418 0.86624 0.98726 0.75371 1.88194 1.52807 1.48074 1.41461 1.22617 0.90515 0.90708 0.98239 1.22793 0.99645 1.04092 0.96594 1.22617 0.91147 0.90024 0.98232 1.88165 1.47350 1.51724 1.44092 1.22371 0.96465 0.88390 0.99036 0.93132 0.95203 0.89144 0.92130 0.93605 0.92535 0.95604 0.90147 0.91706 0.89825 0.89517 0.92921 0.93037 0.88329 0.89924 0.89913 0.93057 0.88485 0.92202 0.95803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.76 11.35 55.43 0.63 -25.13 16 2 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 3 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -14.36 8.57 -34.44 -0.30 -14.66 16 8 H 0.05 1.49 7.75 -52.49 -0.41 1.08 16 9 C 0.05 1.38 2.27 -91.62 -0.21 1.17 16 10 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 11 C -0.11 -2.68 5.02 -26.61 -0.13 -2.81 16 12 C -0.12 -2.35 6.09 -26.65 -0.16 -2.51 16 13 C 0.06 1.05 5.05 -3.83 -0.02 1.03 16 14 N -0.53 -10.09 4.86 -234.58 -1.14 -11.23 16 15 C 0.06 0.98 5.26 -3.82 -0.02 0.96 16 16 C -0.15 -2.19 4.59 -26.73 -0.12 -2.31 16 17 C 0.25 3.39 3.25 37.16 0.12 3.51 16 18 O -0.38 -5.28 10.07 -59.03 -0.59 -5.87 16 19 C 0.06 0.54 6.96 37.29 0.26 0.80 16 20 C -0.19 -1.65 6.35 -26.46 -0.17 -1.82 16 21 C 0.06 0.54 6.96 37.29 0.26 0.80 16 22 O -0.39 -5.36 10.54 -59.03 -0.62 -5.99 16 23 C 0.06 1.41 4.07 -3.77 -0.02 1.39 16 24 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.09 2.43 6.15 -51.93 -0.32 2.12 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.88 8.06 -51.93 -0.42 0.46 16 30 H 0.03 0.46 6.75 -51.93 -0.35 0.11 16 31 H 0.08 1.29 7.82 -51.93 -0.41 0.88 16 32 H 0.06 0.88 8.06 -51.92 -0.42 0.46 16 33 H 0.08 1.25 6.68 -51.93 -0.35 0.90 16 34 H 0.09 1.51 6.51 -51.93 -0.34 1.17 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 1.33 8.12 -51.93 -0.42 0.90 16 43 H 0.02 0.53 6.61 -51.93 -0.34 0.19 16 LS Contribution 327.81 15.07 4.94 4.94 Total: -1.00 -30.15 327.81 -9.96 -40.12 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -7.56 Total: -0.68 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -0.60 Total: -12.79 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: -0.51 Total: -36.36 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: -1.22 Total: -11.86 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.15 -9.96 -40.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852319573.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.550 kcal (2) G-P(sol) polarization free energy of solvation -30.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds