Wall clock time and date at job start Mon Mar 30 2020 01:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00074 * 2 1 4 4 H 1.48491 * 109.47198 * 270.00044 * 3 2 1 5 5 H 1.48505 * 109.47312 * 29.99950 * 3 2 1 6 6 H 1.48499 * 109.47221 * 149.99713 * 3 2 1 7 7 C 1.37877 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00492 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99938 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.53326 * 299.90188 * 9 7 2 11 11 C 1.53120 * 109.50132 * 59.99803 * 9 7 2 12 12 C 1.53123 * 109.21163 * 177.62791 * 11 9 7 13 13 C 1.53037 * 109.27398 * 302.31409 * 12 11 9 14 14 N 1.46848 * 109.52381 * 59.18254 * 13 12 11 15 15 C 1.46900 * 110.99918 * 174.15634 * 14 13 12 16 16 C 1.53006 * 109.47181 * 66.04184 * 15 14 13 17 17 C 1.52996 * 109.47274 * 179.97438 * 16 15 14 18 18 O 1.42961 * 109.47346 * 295.00193 * 17 16 15 19 19 C 1.43093 * 113.77369 * 181.20323 * 18 17 16 20 20 C 1.53264 * 108.93789 * 57.97002 * 19 18 17 21 21 C 1.53259 * 108.84558 * 305.47402 * 20 19 18 22 22 O 1.42968 * 109.47162 * 175.00155 * 17 16 15 23 23 C 1.46845 * 111.19518 * 298.25146 * 14 13 12 24 24 H 0.97002 * 120.00547 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.52427 * 57.69065 * 11 9 7 26 26 H 1.08995 * 109.52208 * 297.56384 * 11 9 7 27 27 H 1.08996 * 109.50077 * 62.25431 * 12 11 9 28 28 H 1.08993 * 109.50100 * 182.33643 * 12 11 9 29 29 H 1.09006 * 109.45986 * 179.19524 * 13 12 11 30 30 H 1.08996 * 109.46322 * 299.16841 * 13 12 11 31 31 H 1.08996 * 109.47225 * 186.04271 * 15 14 13 32 32 H 1.09007 * 109.47465 * 306.04862 * 15 14 13 33 33 H 1.08996 * 109.47113 * 300.00157 * 16 15 14 34 34 H 1.09002 * 109.46981 * 59.99663 * 16 15 14 35 35 H 1.09001 * 109.46866 * 55.00181 * 17 16 15 36 36 H 1.08998 * 109.55730 * 298.13857 * 19 18 17 37 37 H 1.08998 * 109.65077 * 177.85810 * 19 18 17 38 38 H 1.09005 * 109.57232 * 185.67092 * 20 19 18 39 39 H 1.08993 * 109.68151 * 65.35265 * 20 19 18 40 40 H 1.08993 * 109.56129 * 294.68987 * 21 20 19 41 41 H 1.09001 * 109.55706 * 174.36297 * 21 20 19 42 42 H 1.09003 * 109.45905 * 181.76430 * 23 14 13 43 43 H 1.09002 * 109.46166 * 301.73872 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6250 -2.5586 0.8908 11 6 0.3709 -2.5813 -1.2498 12 6 -0.3460 -3.9341 -1.2733 13 6 0.6931 -5.0572 -1.2416 14 7 1.5091 -4.9365 -0.0266 15 6 2.4255 -6.0768 0.1073 16 6 3.4527 -6.0416 -1.0262 17 6 4.4075 -7.2288 -0.8863 18 8 5.1671 -7.0903 0.3169 19 6 6.1136 -8.1429 0.5260 20 6 7.0707 -8.1960 -0.6699 21 6 6.2484 -8.3270 -1.9566 22 8 5.2934 -7.2626 -2.0079 23 6 2.2440 -3.6654 -0.0047 24 1 -0.4851 0.8400 0.0004 25 1 0.9923 -2.4829 -2.1398 26 1 -0.3663 -1.7787 -1.2296 27 1 -0.9972 -4.0161 -0.4030 28 1 -0.9418 -4.0144 -2.1825 29 1 0.1855 -6.0218 -1.2438 30 1 1.3352 -4.9827 -2.1192 31 1 2.9405 -6.0184 1.0662 32 1 1.8588 -7.0066 0.0552 33 1 2.9377 -6.1000 -1.9850 34 1 4.0193 -5.1119 -0.9742 35 1 3.8332 -8.1545 -0.8488 36 1 5.5881 -9.0937 0.6152 37 1 6.6793 -7.9514 1.4378 38 1 7.7323 -9.0565 -0.5702 39 1 7.6633 -7.2820 -0.7067 40 1 5.7281 -9.2847 -1.9613 41 1 6.9103 -8.2652 -2.8205 42 1 2.8629 -3.6192 0.8914 43 1 2.8786 -3.5975 -0.8883 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852319573.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:42 Heat of formation + Delta-G solvation = -125.322987 kcal Electronic energy + Delta-G solvation = -21602.590967 eV Core-core repulsion = 18453.141396 eV Total energy + Delta-G solvation = -3149.449571 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.03342 -39.91110 -36.71493 -36.14717 -34.45414 -33.26686 -31.67020 -30.75446 -26.96633 -26.93846 -26.42128 -24.10492 -23.18362 -22.25693 -22.11383 -20.00374 -18.53818 -18.26741 -17.56544 -17.15630 -16.70455 -16.09807 -15.95573 -15.78278 -15.70047 -15.02908 -14.84511 -14.60497 -14.30594 -14.29472 -13.73240 -13.46994 -13.32414 -12.99725 -12.85531 -12.71535 -12.50452 -12.42646 -12.11170 -12.02570 -11.90214 -11.71493 -11.50390 -11.36739 -11.00162 -10.84560 -10.65869 -10.64555 -10.36499 -9.10136 -8.07210 -6.21247 1.41044 1.41304 1.52084 2.43312 2.58395 2.66061 3.17510 3.19432 3.74344 3.79615 3.83527 4.01433 4.13715 4.19907 4.22204 4.30911 4.35403 4.43032 4.43659 4.53479 4.64379 4.67023 4.75822 4.82197 4.83375 4.92061 4.95431 5.07229 5.09463 5.12537 5.20244 5.24992 5.42837 5.54349 5.64563 5.91776 5.98700 6.14478 6.17958 6.22412 6.38730 6.47724 6.91002 7.46323 8.97444 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.023629 B = 0.004295 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.716271 B = 6517.675867 C = 7216.135869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.015 3.985 3 Si 0.953 3.047 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.537 4.537 8 H 0.047 0.953 9 C 0.051 3.949 10 H -0.003 1.003 11 C -0.104 4.104 12 C -0.112 4.112 13 C 0.062 3.938 14 N -0.544 5.544 15 C 0.069 3.931 16 C -0.139 4.139 17 C 0.257 3.743 18 O -0.414 6.414 19 C 0.045 3.955 20 C -0.189 4.189 21 C 0.046 3.954 22 O -0.421 6.421 23 C 0.082 3.918 24 H 0.261 0.739 25 H 0.020 0.980 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.029 0.971 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.109 0.891 42 H 0.048 0.952 43 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.738 -20.306 -2.908 22.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.184 4.184 3 Si 0.779 3.221 4 H -0.201 1.201 5 H -0.206 1.206 6 H -0.195 1.195 7 C -0.576 4.576 8 H 0.066 0.934 9 C 0.032 3.968 10 H 0.015 0.985 11 C -0.142 4.142 12 C -0.150 4.150 13 C -0.065 4.065 14 N -0.267 5.267 15 C -0.059 4.059 16 C -0.178 4.178 17 C 0.162 3.838 18 O -0.335 6.335 19 C -0.030 4.030 20 C -0.226 4.226 21 C -0.029 4.029 22 O -0.342 6.342 23 C -0.045 4.045 24 H 0.070 0.930 25 H 0.039 0.961 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.112 0.888 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.104 0.896 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.127 0.873 42 H 0.067 0.933 43 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 9.219 -19.906 -2.514 22.080 hybrid contribution 1.063 1.033 -0.600 1.600 sum 10.282 -18.872 -3.114 21.716 Atomic orbital electron populations 1.70030 1.07103 1.27061 1.51205 1.25698 0.95678 1.02234 0.94743 0.85630 0.78730 0.79505 0.78238 1.20099 1.20640 1.19500 1.21515 0.92852 0.92353 1.50873 0.93435 1.18634 0.93018 0.91284 0.93848 0.98525 1.21458 0.99053 0.96530 0.97181 1.21599 0.97593 0.94752 1.01013 1.22095 0.94945 0.99316 0.90190 1.62193 1.23863 1.02120 1.38505 1.22106 0.92067 0.94344 0.97359 1.22156 0.96822 0.97155 1.01652 1.23293 0.86657 0.98424 0.75440 1.88149 1.53813 1.50042 1.41539 1.22917 0.90384 0.90611 0.99128 1.22772 0.99520 1.04634 0.95699 1.22925 0.90950 0.89818 0.99231 1.88113 1.48296 1.53603 1.44227 1.21970 0.95279 0.89078 0.98202 0.93029 0.96088 0.92355 0.93014 0.91068 0.88829 0.95251 0.90887 0.88583 0.89600 0.92779 0.90508 0.90973 0.87400 0.86782 0.91655 0.90993 0.87279 0.93304 0.96414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.46 11.35 21.45 0.24 -54.21 16 2 C 0.02 0.87 5.30 84.66 0.45 1.32 16 3 Si 0.95 45.12 29.54 68.60 2.03 47.15 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 7 C -0.54 -31.16 8.57 25.60 0.22 -30.94 16 8 H 0.05 2.73 7.75 -2.91 -0.02 2.71 16 9 C 0.05 2.72 2.27 -11.44 -0.03 2.69 16 10 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 11 C -0.10 -5.16 5.02 30.68 0.15 -5.00 16 12 C -0.11 -4.37 6.09 30.65 0.19 -4.18 16 13 C 0.06 2.09 5.05 86.33 0.44 2.52 16 14 N -0.54 -20.17 4.86 -896.07 -4.35 -24.53 16 15 C 0.07 2.04 5.26 86.31 0.45 2.50 16 16 C -0.14 -4.05 4.59 30.59 0.14 -3.91 16 17 C 0.26 6.41 3.25 71.98 0.23 6.64 16 18 O -0.41 -10.84 10.07 -126.22 -1.27 -12.12 16 19 C 0.05 0.77 6.96 72.07 0.50 1.27 16 20 C -0.19 -2.77 6.35 30.77 0.20 -2.58 16 21 C 0.05 0.77 6.96 72.07 0.50 1.27 16 22 O -0.42 -10.88 10.54 -126.22 -1.33 -12.21 16 23 C 0.08 3.71 4.07 86.37 0.35 4.06 16 24 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 25 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.06 3.25 6.15 -2.39 -0.01 3.24 16 27 H 0.05 2.10 8.14 -2.39 -0.02 2.09 16 28 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.09 2.53 8.06 -2.38 -0.02 2.51 16 30 H 0.03 0.98 6.75 -2.39 -0.02 0.97 16 31 H 0.07 2.27 7.82 -2.39 -0.02 2.25 16 32 H 0.10 2.27 8.06 -2.38 -0.02 2.25 16 33 H 0.09 2.43 6.68 -2.39 -0.02 2.42 16 34 H 0.05 1.92 6.51 -2.39 -0.02 1.90 16 35 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 41 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.05 2.25 8.12 -2.39 -0.02 2.23 16 43 H 0.02 0.81 6.61 -2.39 -0.02 0.80 16 Total: -1.00 -67.45 327.81 0.07 -67.38 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 0.96 Total: 12.88 kcal Atomic # 6 Polarization: -28.13 SS G_CDS: 3.80 Total: -24.34 kcal Atomic # 7 Polarization: -74.63 SS G_CDS: -4.11 Total: -78.74 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -2.60 Total: -24.33 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -67.45 0.07 -67.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852319573.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.942 kcal (2) G-P(sol) polarization free energy of solvation -67.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds