Wall clock time and date at job start Mon Mar 30 2020 01:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46838 * 2 1 4 4 C 1.52998 * 109.47096 * 119.99709 * 2 1 3 5 5 C 1.50692 * 109.47372 * 295.00229 * 4 2 1 6 6 H 1.08004 * 120.00326 * 359.97438 * 5 4 2 7 7 C 1.37883 * 120.00096 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99583 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00122 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47203 * 89.99968 * 9 7 5 11 11 H 1.48496 * 109.47561 * 210.00103 * 9 7 5 12 12 H 1.48504 * 109.46894 * 330.00377 * 9 7 5 13 13 C 1.53001 * 109.47322 * 239.99888 * 2 1 3 14 14 N 1.46504 * 109.46795 * 64.99574 * 13 2 1 15 15 C 1.39619 * 119.99784 * 180.02562 * 14 13 2 16 16 C 1.40034 * 119.66363 * 359.97438 * 15 14 13 17 17 C 1.35906 * 120.91719 * 180.02562 * 16 15 14 18 18 C 1.40593 * 119.90627 * 0.02562 * 17 16 15 19 19 C 1.40534 * 121.13258 * 180.02562 * 18 17 16 20 20 C 1.36102 * 119.69814 * 179.97438 * 19 18 17 21 21 C 1.39371 * 120.99587 * 359.97438 * 20 19 18 22 22 C 1.36092 * 120.97066 * 0.02562 * 21 20 19 23 23 C 1.40595 * 119.65962 * 359.97438 * 22 21 20 24 24 C 1.37750 * 119.66239 * 180.02562 * 15 14 13 25 25 H 1.08998 * 109.46838 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47227 * 300.00156 * 1 2 3 27 27 H 1.09000 * 109.47246 * 60.00354 * 1 2 3 28 28 H 1.09005 * 109.47094 * 55.00310 * 4 2 1 29 29 H 1.09004 * 109.46940 * 175.00091 * 4 2 1 30 30 H 0.97006 * 119.99375 * 179.97438 * 8 7 5 31 31 H 1.09005 * 109.47172 * 305.00275 * 13 2 1 32 32 H 1.08996 * 109.47350 * 184.99592 * 13 2 1 33 33 H 0.96996 * 120.00394 * 0.02562 * 14 13 2 34 34 H 1.08001 * 119.53849 * 0.04660 * 16 15 14 35 35 H 1.07995 * 120.04586 * 179.97438 * 17 16 15 36 36 H 1.08004 * 120.14904 * 359.96240 * 19 18 17 37 37 H 1.07990 * 119.50151 * 180.02562 * 20 19 18 38 38 H 1.08005 * 119.51425 * 180.02562 * 21 20 19 39 39 H 1.08007 * 120.16605 * 180.26876 * 22 21 20 40 40 H 1.08001 * 120.24668 * 359.95120 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4765 6 1 1.0806 0.9746 2.3757 7 6 1.9933 -0.4017 3.7283 8 7 1.6457 0.2779 4.7993 9 14 2.9636 -1.9882 3.9029 10 1 4.4171 -1.6848 3.8780 11 1 2.6164 -2.6419 5.1902 12 1 2.6290 -2.8993 2.7789 13 6 2.0401 -0.7213 -1.2492 14 7 1.6524 0.0353 -2.4424 15 6 2.0079 -0.4298 -3.7099 16 6 2.7354 -1.6200 -3.8325 17 6 3.0952 -2.0958 -5.0537 18 6 2.7365 -1.3890 -6.2149 19 6 3.0946 -1.8577 -7.4905 20 6 2.7316 -1.1504 -8.5951 21 6 2.0075 0.0351 -8.4824 22 6 1.6429 0.5199 -7.2642 23 6 2.0000 -0.1833 -6.1003 24 6 1.6402 0.2874 -4.8271 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6054 -1.7198 1.2952 29 1 3.1264 -0.7994 1.2056 30 1 1.8930 -0.0451 5.6800 31 1 1.6054 -1.7199 -1.2952 32 1 3.1263 -0.7994 -1.2056 33 1 1.1488 0.8593 -2.3518 34 1 3.0141 -2.1676 -2.9443 35 1 3.6567 -3.0150 -5.1319 36 1 3.6555 -2.7749 -7.5936 37 1 3.0081 -1.5137 -9.5738 38 1 1.7316 0.5770 -9.3750 39 1 1.0781 1.4377 -7.1921 40 1 1.0792 1.2045 -4.7245 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876952607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:02 Heat of formation + Delta-G solvation = 24.280886 kcal Electronic energy + Delta-G solvation = -19073.830710 eV Core-core repulsion = 16238.177369 eV Total energy + Delta-G solvation = -2835.653340 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.29468 -37.88331 -35.92746 -33.69452 -32.56782 -31.90691 -29.63911 -28.77288 -27.37859 -25.70317 -23.50003 -22.80158 -22.01530 -21.53822 -19.37874 -17.61876 -17.08429 -16.99014 -16.39963 -15.07573 -14.93656 -14.74695 -14.39537 -14.16327 -13.67259 -13.42464 -13.24002 -13.10757 -12.98622 -12.70710 -12.35908 -11.94813 -11.89986 -11.52126 -11.13743 -11.09206 -10.87052 -10.79132 -10.52293 -10.17097 -10.02272 -9.79634 -9.67526 -9.32068 -9.17855 -8.58577 -8.20046 -7.08651 -6.08919 -4.07083 0.59401 1.17459 2.12407 3.07933 3.26883 3.34973 3.37172 3.59516 4.20051 4.40593 4.60508 4.83484 4.94128 5.01625 5.20580 5.23980 5.28705 5.32273 5.37646 5.44257 5.51220 5.73127 5.74982 5.86406 6.02053 6.04773 6.15147 6.20993 6.24763 6.28595 6.36234 6.50026 6.57868 6.64700 6.77802 6.83119 6.94930 6.98989 7.13426 7.32388 7.43882 7.73209 7.84830 8.48047 8.95308 9.53158 11.04276 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.042763 B = 0.003141 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.610081 B = 8912.115793 C = 9441.642994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.087 4.087 3 H 0.068 0.932 4 C -0.006 4.006 5 C -0.517 4.517 6 H 0.074 0.926 7 C 0.066 3.934 8 N -0.903 5.903 9 Si 0.879 3.121 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.266 1.266 13 C 0.121 3.879 14 N -0.737 5.737 15 C 0.233 3.767 16 C -0.167 4.167 17 C -0.065 4.065 18 C -0.106 4.106 19 C -0.086 4.086 20 C -0.150 4.150 21 C -0.108 4.108 22 C -0.127 4.127 23 C 0.005 3.995 24 C -0.224 4.224 25 H 0.046 0.954 26 H 0.069 0.931 27 H 0.033 0.967 28 H 0.018 0.982 29 H 0.013 0.987 30 H 0.263 0.737 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.401 0.599 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.121 0.879 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.497 -3.222 -23.936 24.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.106 4.106 3 H 0.087 0.913 4 C -0.044 4.044 5 C -0.555 4.555 6 H 0.092 0.908 7 C -0.135 4.135 8 N -0.542 5.542 9 Si 0.706 3.294 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.190 1.190 13 C -0.003 4.003 14 N -0.363 5.363 15 C 0.127 3.873 16 C -0.188 4.188 17 C -0.084 4.084 18 C -0.107 4.107 19 C -0.104 4.104 20 C -0.169 4.169 21 C -0.126 4.126 22 C -0.145 4.145 23 C 0.004 3.996 24 C -0.249 4.249 25 H 0.065 0.935 26 H 0.088 0.912 27 H 0.052 0.948 28 H 0.037 0.963 29 H 0.031 0.969 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.236 0.764 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.138 0.862 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.139 0.861 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.574 -3.364 -23.509 23.801 hybrid contribution 0.338 -0.479 0.364 0.690 sum 1.912 -3.842 -23.145 23.540 Atomic orbital electron populations 1.21732 0.95398 1.01210 1.00776 1.21242 0.96060 0.99915 0.93393 0.91325 1.19567 0.95721 0.96222 0.92889 1.21076 1.35783 1.09603 0.89037 0.90825 1.25028 0.95617 0.96947 0.95923 1.69913 1.46937 1.39240 0.98077 0.86801 0.80643 0.84362 0.77598 1.20310 1.21403 1.19020 1.21694 0.99071 0.95299 0.84245 1.45046 1.60765 1.27965 1.02573 1.17870 0.91693 0.92118 0.85630 1.20602 1.02853 0.96904 0.98444 1.20822 0.97622 0.98569 0.91352 1.17947 1.02734 0.96423 0.93624 1.20957 0.98597 0.99084 0.91739 1.20665 1.01405 0.96424 0.98387 1.20776 0.98178 0.96233 0.97393 1.20938 1.01583 1.00090 0.91888 1.17739 0.95388 0.93383 0.93076 1.20429 1.10974 1.03180 0.90329 0.93500 0.91191 0.94815 0.96348 0.96907 0.92715 0.92497 0.92478 0.76418 0.85620 0.85666 0.86181 0.86644 0.86581 0.86091 0.86059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.88 37.16 0.33 -1.99 16 2 C -0.09 -1.58 2.37 -90.62 -0.22 -1.80 16 3 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 4 C -0.01 -0.14 3.52 -27.89 -0.10 -0.24 16 5 C -0.52 -14.09 8.96 -34.44 -0.31 -14.40 16 6 H 0.07 2.15 7.30 -52.48 -0.38 1.77 16 7 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 9 Si 0.88 21.23 27.47 -169.99 -4.67 16.56 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 13 C 0.12 1.83 4.28 -4.04 -0.02 1.81 16 14 N -0.74 -10.03 5.45 -58.65 -0.32 -10.35 16 15 C 0.23 3.15 6.64 -83.82 -0.56 2.60 16 16 C -0.17 -2.14 9.21 -39.74 -0.37 -2.51 16 17 C -0.06 -0.76 9.74 -39.53 -0.39 -1.14 16 18 C -0.11 -1.30 5.74 -106.80 -0.61 -1.92 16 19 C -0.09 -0.89 9.76 -39.48 -0.39 -1.28 16 20 C -0.15 -1.45 9.95 -39.93 -0.40 -1.85 16 21 C -0.11 -1.06 9.95 -39.93 -0.40 -1.45 16 22 C -0.13 -1.39 9.77 -39.46 -0.39 -1.78 16 23 C 0.00 0.06 5.74 -106.84 -0.61 -0.55 16 24 C -0.22 -2.89 9.63 -38.94 -0.37 -3.26 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.07 1.37 6.95 -51.93 -0.36 1.01 16 27 H 0.03 0.49 7.18 -51.93 -0.37 0.12 16 28 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 29 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.06 0.85 7.92 -51.93 -0.41 0.44 16 32 H 0.06 0.86 7.93 -51.93 -0.41 0.45 16 33 H 0.40 5.08 7.65 -40.82 -0.31 4.77 16 34 H 0.13 1.52 6.65 -52.49 -0.35 1.17 16 35 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 36 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 37 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 39 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 40 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 326.54 15.07 4.92 4.92 Total: -1.00 -30.02 326.54 -10.09 -40.12 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -5.92 Total: 3.29 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: -4.88 Total: -27.97 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.45 Total: -36.92 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.02 -10.09 -40.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876952607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.398 kcal (2) G-P(sol) polarization free energy of solvation -30.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds