Wall clock time and date at job start Mon Mar 30 2020 01:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46838 * 2 1 4 4 C 1.52998 * 109.47096 * 119.99709 * 2 1 3 5 5 C 1.50692 * 109.47372 * 295.00229 * 4 2 1 6 6 H 1.08004 * 120.00326 * 359.97438 * 5 4 2 7 7 C 1.37883 * 120.00096 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99583 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00122 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47203 * 89.99968 * 9 7 5 11 11 H 1.48496 * 109.47561 * 210.00103 * 9 7 5 12 12 H 1.48504 * 109.46894 * 330.00377 * 9 7 5 13 13 C 1.53001 * 109.47322 * 239.99888 * 2 1 3 14 14 N 1.46504 * 109.46795 * 64.99574 * 13 2 1 15 15 C 1.39619 * 119.99784 * 180.02562 * 14 13 2 16 16 C 1.40034 * 119.66363 * 359.97438 * 15 14 13 17 17 C 1.35906 * 120.91719 * 180.02562 * 16 15 14 18 18 C 1.40593 * 119.90627 * 0.02562 * 17 16 15 19 19 C 1.40534 * 121.13258 * 180.02562 * 18 17 16 20 20 C 1.36102 * 119.69814 * 179.97438 * 19 18 17 21 21 C 1.39371 * 120.99587 * 359.97438 * 20 19 18 22 22 C 1.36092 * 120.97066 * 0.02562 * 21 20 19 23 23 C 1.40595 * 119.65962 * 359.97438 * 22 21 20 24 24 C 1.37750 * 119.66239 * 180.02562 * 15 14 13 25 25 H 1.08998 * 109.46838 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47227 * 300.00156 * 1 2 3 27 27 H 1.09000 * 109.47246 * 60.00354 * 1 2 3 28 28 H 1.09005 * 109.47094 * 55.00310 * 4 2 1 29 29 H 1.09004 * 109.46940 * 175.00091 * 4 2 1 30 30 H 0.97006 * 119.99375 * 179.97438 * 8 7 5 31 31 H 1.09005 * 109.47172 * 305.00275 * 13 2 1 32 32 H 1.08996 * 109.47350 * 184.99592 * 13 2 1 33 33 H 0.96996 * 120.00394 * 0.02562 * 14 13 2 34 34 H 1.08001 * 119.53849 * 0.04660 * 16 15 14 35 35 H 1.07995 * 120.04586 * 179.97438 * 17 16 15 36 36 H 1.08004 * 120.14904 * 359.96240 * 19 18 17 37 37 H 1.07990 * 119.50151 * 180.02562 * 20 19 18 38 38 H 1.08005 * 119.51425 * 180.02562 * 21 20 19 39 39 H 1.08007 * 120.16605 * 180.26876 * 22 21 20 40 40 H 1.08001 * 120.24668 * 359.95120 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4765 6 1 1.0806 0.9746 2.3757 7 6 1.9933 -0.4017 3.7283 8 7 1.6457 0.2779 4.7993 9 14 2.9636 -1.9882 3.9029 10 1 4.4171 -1.6848 3.8780 11 1 2.6164 -2.6419 5.1902 12 1 2.6290 -2.8993 2.7789 13 6 2.0401 -0.7213 -1.2492 14 7 1.6524 0.0353 -2.4424 15 6 2.0079 -0.4298 -3.7099 16 6 2.7354 -1.6200 -3.8325 17 6 3.0952 -2.0958 -5.0537 18 6 2.7365 -1.3890 -6.2149 19 6 3.0946 -1.8577 -7.4905 20 6 2.7316 -1.1504 -8.5951 21 6 2.0075 0.0351 -8.4824 22 6 1.6429 0.5199 -7.2642 23 6 2.0000 -0.1833 -6.1003 24 6 1.6402 0.2874 -4.8271 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6054 -1.7198 1.2952 29 1 3.1264 -0.7994 1.2056 30 1 1.8930 -0.0451 5.6800 31 1 1.6054 -1.7199 -1.2952 32 1 3.1263 -0.7994 -1.2056 33 1 1.1488 0.8593 -2.3518 34 1 3.0141 -2.1676 -2.9443 35 1 3.6567 -3.0150 -5.1319 36 1 3.6555 -2.7749 -7.5936 37 1 3.0081 -1.5137 -9.5738 38 1 1.7316 0.5770 -9.3750 39 1 1.0781 1.4377 -7.1921 40 1 1.0792 1.2045 -4.7245 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876952607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:02 Heat of formation + Delta-G solvation = 8.926091 kcal Electronic energy + Delta-G solvation = -19074.496544 eV Core-core repulsion = 16238.177369 eV Total energy + Delta-G solvation = -2836.319174 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.15167 -38.96121 -37.15784 -35.07840 -33.98331 -33.16397 -30.51553 -30.04384 -28.89869 -26.96569 -24.58908 -24.18213 -22.89933 -22.58690 -20.88108 -19.00546 -18.53041 -17.88110 -17.47120 -16.48661 -16.03211 -15.80894 -15.74865 -15.32779 -14.93946 -14.70655 -14.24414 -14.14437 -14.03247 -13.95486 -13.86490 -13.52312 -12.90466 -12.80156 -12.72661 -12.29593 -12.17260 -11.92077 -11.81441 -11.58659 -11.55555 -11.37012 -11.12192 -10.97823 -10.74292 -10.23195 -9.05254 -8.26854 -8.03838 -6.29720 -0.23928 0.30891 1.27061 1.37076 1.38702 1.49945 2.23371 2.37495 2.53069 3.08841 3.33694 3.79464 3.98036 4.05352 4.13451 4.19644 4.21245 4.30905 4.44513 4.48517 4.56923 4.58928 4.71851 4.75839 4.87404 4.94428 5.02488 5.08765 5.20259 5.22462 5.32366 5.33213 5.41491 5.46737 5.49011 5.63513 5.68697 5.72646 5.76212 5.94810 6.19721 6.30397 6.43576 6.77998 6.84094 7.34056 8.89723 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.042763 B = 0.003141 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.610081 B = 8912.115793 C = 9441.642994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.081 4.081 3 H 0.058 0.942 4 C -0.005 4.005 5 C -0.520 4.520 6 H 0.036 0.964 7 C 0.001 3.999 8 N -0.954 5.954 9 Si 0.947 3.053 10 H -0.268 1.268 11 H -0.288 1.288 12 H -0.243 1.243 13 C 0.137 3.863 14 N -0.739 5.739 15 C 0.217 3.783 16 C -0.185 4.185 17 C -0.062 4.062 18 C -0.124 4.124 19 C -0.094 4.094 20 C -0.152 4.152 21 C -0.107 4.107 22 C -0.143 4.143 23 C -0.018 4.018 24 C -0.231 4.231 25 H 0.050 0.950 26 H 0.037 0.963 27 H 0.061 0.939 28 H 0.023 0.977 29 H 0.020 0.980 30 H 0.264 0.736 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.403 0.597 34 H 0.130 0.870 35 H 0.150 0.850 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.133 0.867 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.498 -5.030 -26.880 27.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.100 4.100 3 H 0.077 0.923 4 C -0.043 4.043 5 C -0.558 4.558 6 H 0.054 0.946 7 C -0.195 4.195 8 N -0.595 5.595 9 Si 0.771 3.229 10 H -0.194 1.194 11 H -0.214 1.214 12 H -0.166 1.166 13 C 0.012 3.988 14 N -0.367 5.367 15 C 0.112 3.888 16 C -0.206 4.206 17 C -0.081 4.081 18 C -0.126 4.126 19 C -0.112 4.112 20 C -0.170 4.170 21 C -0.125 4.125 22 C -0.162 4.162 23 C -0.018 4.018 24 C -0.256 4.256 25 H 0.069 0.931 26 H 0.056 0.944 27 H 0.080 0.920 28 H 0.042 0.958 29 H 0.038 0.962 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.239 0.761 34 H 0.148 0.852 35 H 0.168 0.832 36 H 0.161 0.839 37 H 0.160 0.840 38 H 0.159 0.841 39 H 0.151 0.849 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.573 -5.169 -26.499 27.121 hybrid contribution -0.015 0.176 1.117 1.130 sum 2.558 -4.993 -25.382 25.995 Atomic orbital electron populations 1.21645 0.94930 1.01351 1.00561 1.21067 0.96412 0.99218 0.93263 0.92344 1.19522 0.96141 0.96013 0.92630 1.21425 1.34497 1.08680 0.91179 0.94619 1.26007 0.97047 1.00939 0.95551 1.70076 1.49075 1.41605 0.98759 0.85701 0.79150 0.79939 0.78122 1.19362 1.21428 1.16637 1.21371 0.99027 0.95067 0.83308 1.44848 1.61473 1.28118 1.02246 1.18002 0.92570 0.92808 0.85411 1.20746 1.03608 0.97072 0.99185 1.21123 0.97007 0.99164 0.90778 1.18277 1.02964 0.96546 0.94786 1.21275 0.98721 1.00080 0.91144 1.21071 1.00389 0.96030 0.99491 1.21160 0.97160 0.96316 0.97871 1.21172 1.02265 1.00761 0.91971 1.18037 0.96083 0.94169 0.93555 1.20592 1.11039 1.03460 0.90515 0.93112 0.94381 0.92026 0.95847 0.96196 0.92690 0.91923 0.92275 0.76130 0.85223 0.83200 0.83876 0.83977 0.84058 0.84943 0.85415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.40 8.88 71.98 0.64 -3.76 16 2 C -0.08 -2.89 2.37 -10.79 -0.03 -2.92 16 3 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 4 C -0.01 -0.23 3.52 29.84 0.10 -0.12 16 5 C -0.52 -29.02 8.96 25.60 0.23 -28.79 16 6 H 0.04 2.20 7.30 -2.91 -0.02 2.18 16 7 C 0.00 0.05 5.47 84.66 0.46 0.51 16 8 N -0.95 -59.60 13.96 21.45 0.30 -59.30 16 9 Si 0.95 43.53 27.47 68.60 1.88 45.42 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 12 H -0.24 -10.20 6.54 99.48 0.65 -9.55 16 13 C 0.14 3.95 4.28 86.38 0.37 4.32 16 14 N -0.74 -19.38 5.45 -339.46 -1.85 -21.23 16 15 C 0.22 5.67 6.64 38.22 0.25 5.92 16 16 C -0.19 -4.50 9.21 22.16 0.20 -4.30 16 17 C -0.06 -1.34 9.74 22.30 0.22 -1.12 16 18 C -0.12 -2.84 5.74 -21.28 -0.12 -2.96 16 19 C -0.09 -1.70 9.76 22.33 0.22 -1.49 16 20 C -0.15 -2.44 9.95 22.05 0.22 -2.22 16 21 C -0.11 -1.81 9.95 22.04 0.22 -1.59 16 22 C -0.14 -2.92 9.77 22.35 0.22 -2.70 16 23 C -0.02 -0.43 5.74 -21.30 -0.12 -0.55 16 24 C -0.23 -5.80 9.63 22.69 0.22 -5.58 16 25 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.04 1.53 6.95 -2.39 -0.02 1.51 16 27 H 0.06 1.76 7.18 -2.39 -0.02 1.74 16 28 H 0.02 1.01 7.20 -2.38 -0.02 1.00 16 29 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 30 H 0.26 15.47 8.31 -92.70 -0.77 14.70 16 31 H 0.06 1.75 7.92 -2.38 -0.02 1.73 16 32 H 0.06 1.69 7.93 -2.39 -0.02 1.67 16 33 H 0.40 9.91 7.65 -92.71 -0.71 9.20 16 34 H 0.13 2.94 6.65 -2.91 -0.02 2.92 16 35 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 36 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 37 H 0.14 1.49 8.06 -2.92 -0.02 1.47 16 38 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 39 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 40 H 0.13 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -66.05 326.54 3.90 -62.16 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 0.26 Total: 20.31 kcal Atomic # 6 Polarization: -50.67 SS G_CDS: 3.30 Total: -47.36 kcal Atomic # 7 Polarization: -78.97 SS G_CDS: -1.55 Total: -80.52 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.88 Total: 45.42 kcal Total: -66.05 3.90 -62.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876952607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.085 kcal (2) G-P(sol) polarization free energy of solvation -66.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds