Wall clock time and date at job start Mon Mar 30 2020 01:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 120.00472 * 2 1 4 4 H 1.48495 * 109.47141 * 239.99904 * 3 2 1 5 5 H 1.48506 * 109.47177 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47296 * 119.99897 * 3 2 1 7 7 C 1.38816 * 119.99377 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99354 * 201.11260 * 7 2 1 9 9 N 1.36934 * 120.00428 * 21.11623 * 7 2 1 10 10 C 1.46506 * 119.99657 * 36.80027 * 9 7 2 11 11 C 1.52996 * 109.47199 * 90.00080 * 10 9 7 12 12 H 1.09000 * 109.47077 * 60.00038 * 11 10 9 13 13 O 1.42897 * 109.47130 * 300.00214 * 11 10 9 14 14 C 1.53001 * 109.47069 * 179.97438 * 11 10 9 15 15 C 1.52996 * 109.46760 * 185.00054 * 14 11 10 16 16 O 1.42900 * 110.43818 * 62.46554 * 15 14 11 17 17 C 1.54890 * 110.49158 * 299.77433 * 15 14 11 18 18 C 1.54881 * 102.75171 * 203.38230 * 17 15 14 19 19 C 1.54268 * 104.19892 * 37.94600 * 18 17 15 20 20 C 1.53878 * 106.59363 * 336.38600 * 19 18 17 21 21 C 1.46497 * 120.00263 * 216.80026 * 9 7 2 22 22 C 1.52997 * 117.49646 * 14.51116 * 21 9 7 23 23 C 1.52998 * 117.49781 * 305.85162 * 21 9 7 24 24 H 0.97008 * 119.99546 * 354.77734 * 1 2 3 25 25 H 1.09000 * 109.47074 * 330.00116 * 10 9 7 26 26 H 1.09003 * 109.46685 * 210.00395 * 10 9 7 27 27 H 0.96703 * 113.99936 * 299.99737 * 13 11 10 28 28 H 1.09005 * 109.46723 * 65.00307 * 14 11 10 29 29 H 1.08995 * 109.46951 * 305.00277 * 14 11 10 30 30 H 0.96699 * 114.00222 * 181.84043 * 16 15 14 31 31 H 1.08998 * 110.75390 * 85.06541 * 17 15 14 32 32 H 1.09005 * 110.75601 * 321.69917 * 17 15 14 33 33 H 1.09006 * 110.48842 * 279.26372 * 18 17 15 34 34 H 1.09007 * 110.48766 * 156.62175 * 18 17 15 35 35 H 1.08995 * 110.03354 * 95.66868 * 19 18 17 36 36 H 1.09004 * 110.03471 * 217.05757 * 19 18 17 37 37 H 1.09003 * 110.03091 * 119.28466 * 20 19 18 38 38 H 1.08998 * 110.03446 * 240.66368 * 20 19 18 39 39 H 1.09003 * 115.55098 * 160.17472 * 21 9 7 40 40 H 1.09004 * 117.50156 * 0.02562 * 22 21 9 41 41 H 1.08998 * 117.49690 * 145.01996 * 22 21 9 42 42 H 1.09007 * 117.49796 * 214.97506 * 23 21 9 43 43 H 1.08996 * 117.50039 * 359.97271 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6962 -1.2124 5 1 1.2854 2.7465 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0101 -1.2023 0.0005 8 1 3.0358 -1.2335 0.3375 9 7 1.3944 -2.3485 -0.4262 10 6 0.4519 -2.3001 -1.5467 11 6 1.2073 -2.5222 -2.8585 12 1 1.6955 -3.4965 -2.8362 13 8 2.1923 -1.4996 -3.0200 14 6 0.2229 -2.4722 -4.0287 15 6 0.9557 -2.8174 -5.3266 16 8 1.4698 -4.1495 -5.2703 17 6 2.0966 -1.8037 -5.5912 18 6 2.2958 -1.9055 -7.1238 19 6 0.8669 -2.0727 -7.6808 20 6 0.0149 -2.6526 -6.5381 21 6 1.6781 -3.6232 0.2378 22 6 2.3885 -3.5716 1.5919 23 6 3.1428 -4.0511 0.3491 24 1 -0.4850 0.8367 0.0765 25 1 -0.0362 -1.3257 -1.5691 26 1 -0.2994 -3.0801 -1.4235 27 1 1.8285 -0.6041 -3.0484 28 1 -0.1997 -1.4704 -4.1054 29 1 -0.5778 -3.1925 -3.8609 30 1 1.9685 -4.4122 -6.0561 31 1 3.0040 -2.0970 -5.0634 32 1 1.7919 -0.7964 -5.3073 33 1 2.9062 -2.7737 -7.3724 34 1 2.7517 -0.9940 -7.5106 35 1 0.4704 -1.1051 -7.9882 36 1 0.8741 -2.7592 -8.5275 37 1 -0.7951 -1.9664 -6.2911 38 1 -0.3922 -3.6206 -6.8301 39 1 0.9348 -4.4064 0.0890 40 1 2.6445 -2.5892 1.9889 41 1 2.1129 -4.3212 2.3336 42 1 3.3631 -5.1160 0.2739 43 1 3.8953 -3.3845 -0.0720 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878033576.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:50 Heat of formation + Delta-G solvation = -67.028558 kcal Electronic energy + Delta-G solvation = -22297.033278 eV Core-core repulsion = 19150.111543 eV Total energy + Delta-G solvation = -3146.921735 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.42382 -37.25285 -35.81176 -34.33656 -33.09022 -31.23147 -30.24069 -28.62700 -27.35938 -24.82000 -23.20987 -21.26803 -20.90550 -20.25571 -19.91647 -19.67722 -16.73668 -16.55866 -15.73156 -15.48911 -14.82230 -14.48785 -14.24222 -14.10496 -13.81615 -13.63663 -13.44491 -13.22846 -12.43232 -12.01809 -11.83316 -11.42467 -11.32682 -11.13862 -11.07372 -10.89717 -10.75824 -10.68886 -10.52814 -10.48736 -10.40850 -10.28350 -9.98599 -9.89139 -9.56953 -9.48324 -9.19611 -8.75466 -8.37913 -6.36888 -5.75409 -3.27790 3.37619 3.43332 3.47820 4.41750 4.47193 4.62164 4.70335 4.88105 5.03020 5.15943 5.34686 5.42280 5.46534 5.51313 5.55620 5.64713 5.74824 5.87096 5.89832 5.91119 5.98974 6.02141 6.12324 6.19858 6.31365 6.34138 6.38924 6.48752 6.54610 6.58158 6.62237 6.66855 6.78733 7.02507 7.10720 7.25882 7.64378 7.88058 7.89738 8.55165 8.69794 9.22521 9.84861 10.42063 11.25137 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018410 B = 0.006451 C = 0.005423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.569677 B = 4339.143526 C = 5161.998003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.007 3.993 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.293 1.293 6 H -0.283 1.283 7 C -0.231 4.231 8 H 0.058 0.942 9 N -0.542 5.542 10 C 0.116 3.884 11 C 0.095 3.905 12 H 0.086 0.914 13 O -0.544 6.544 14 C -0.134 4.134 15 C 0.136 3.864 16 O -0.551 6.551 17 C -0.134 4.134 18 C -0.136 4.136 19 C -0.126 4.126 20 C -0.155 4.155 21 C 0.128 3.872 22 C -0.199 4.199 23 C -0.225 4.225 24 H 0.255 0.745 25 H 0.101 0.899 26 H 0.029 0.971 27 H 0.360 0.640 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.367 0.633 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.407 -4.564 -12.489 13.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.191 4.191 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.210 1.210 7 C -0.361 4.361 8 H 0.076 0.924 9 N -0.257 5.257 10 C -0.010 4.010 11 C 0.034 3.966 12 H 0.103 0.897 13 O -0.347 6.347 14 C -0.172 4.172 15 C 0.096 3.904 16 O -0.356 6.356 17 C -0.172 4.172 18 C -0.174 4.174 19 C -0.164 4.164 20 C -0.193 4.193 21 C 0.018 3.982 22 C -0.238 4.238 23 C -0.266 4.266 24 H 0.065 0.935 25 H 0.118 0.882 26 H 0.047 0.953 27 H 0.206 0.794 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.214 0.786 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.115 0.885 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.341 -4.881 -11.968 12.930 hybrid contribution 0.279 1.314 -0.547 1.451 sum 0.620 -3.567 -12.515 13.028 Atomic orbital electron populations 1.69887 1.05422 1.25869 1.52985 1.25094 0.95014 0.98359 1.00639 0.86464 0.79101 0.83287 0.78530 1.20622 1.21899 1.20956 1.18820 0.93956 0.84700 1.38589 0.92429 1.43206 1.49387 1.01860 1.31215 1.21690 0.90985 1.03143 0.85226 1.22531 0.89288 0.91721 0.93069 0.89653 1.86538 1.35601 1.17006 1.95574 1.22273 0.99129 1.01508 0.94308 1.21945 0.92214 0.82208 0.94078 1.86558 1.73815 1.30400 1.44849 1.23140 1.00217 1.00075 0.93764 1.22502 0.96256 1.01373 0.97224 1.22150 0.95730 1.00739 0.97733 1.22943 0.99040 1.01493 0.95864 1.21108 0.91402 0.90645 0.95051 1.23080 1.07219 1.01955 0.91525 1.23346 1.00089 0.98981 1.04226 0.93515 0.88179 0.95289 0.79396 0.90799 0.91255 0.78643 0.89333 0.90717 0.92111 0.91764 0.91975 0.92297 0.90997 0.91369 0.89670 0.88454 0.91000 0.91141 0.89628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.85 11.39 55.49 0.63 -24.22 16 2 C 0.01 0.20 4.97 -17.43 -0.09 0.11 16 3 Si 0.90 21.20 29.61 -169.99 -5.03 16.17 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.23 -6.13 7.42 -15.06 -0.11 -6.24 16 8 H 0.06 1.60 7.16 -52.48 -0.38 1.22 16 9 N -0.54 -13.30 2.74 -165.66 -0.45 -13.75 16 10 C 0.12 2.61 5.05 -4.04 -0.02 2.59 16 11 C 0.10 1.86 3.14 -26.73 -0.08 1.77 16 12 H 0.09 1.82 7.66 -51.93 -0.40 1.42 16 13 O -0.54 -11.07 9.56 -35.23 -0.34 -11.41 16 14 C -0.13 -2.15 4.21 -26.73 -0.11 -2.26 16 15 C 0.14 1.90 0.93 -88.96 -0.08 1.81 16 16 O -0.55 -8.03 12.51 -35.23 -0.44 -8.47 16 17 C -0.13 -1.83 4.27 -24.74 -0.11 -1.94 16 18 C -0.14 -1.48 6.52 -25.08 -0.16 -1.64 16 19 C -0.13 -1.28 6.80 -25.61 -0.17 -1.46 16 20 C -0.16 -1.82 6.11 -25.61 -0.16 -1.97 16 21 C 0.13 2.84 6.61 -67.93 -0.45 2.39 16 22 C -0.20 -4.15 9.81 -26.69 -0.26 -4.42 16 23 C -0.23 -4.59 10.08 -26.69 -0.27 -4.86 16 24 H 0.25 6.88 8.32 -40.82 -0.34 6.54 16 25 H 0.10 2.49 5.45 -51.93 -0.28 2.21 16 26 H 0.03 0.63 8.04 -51.93 -0.42 0.22 16 27 H 0.36 7.07 8.81 45.56 0.40 7.47 16 28 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.37 4.00 8.46 45.56 0.39 4.39 16 31 H 0.09 1.40 7.26 -51.93 -0.38 1.03 16 32 H 0.07 1.06 7.52 -51.93 -0.39 0.67 16 33 H 0.06 0.60 7.87 -51.93 -0.41 0.19 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.83 7.80 -51.93 -0.40 0.43 16 38 H 0.07 0.77 8.07 -51.93 -0.42 0.35 16 39 H 0.09 1.76 8.10 -51.93 -0.42 1.34 16 40 H 0.10 2.24 6.95 -51.93 -0.36 1.88 16 41 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 43 H 0.09 1.89 7.97 -51.93 -0.41 1.48 16 LS Contribution 335.41 15.07 5.05 5.05 Total: -1.00 -28.68 335.41 -8.63 -37.31 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -5.97 Total: 15.42 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: -2.08 Total: -16.11 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.18 Total: -37.97 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.78 Total: -19.87 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.68 -8.63 -37.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878033576.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.714 kcal (2) G-P(sol) polarization free energy of solvation -28.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds