Wall clock time and date at job start Mon Mar 30 2020 01:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 120.00472 * 2 1 4 4 H 1.48495 * 109.47141 * 239.99904 * 3 2 1 5 5 H 1.48506 * 109.47177 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47296 * 119.99897 * 3 2 1 7 7 C 1.38816 * 119.99377 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99354 * 201.11260 * 7 2 1 9 9 N 1.36934 * 120.00428 * 21.11623 * 7 2 1 10 10 C 1.46506 * 119.99657 * 36.80027 * 9 7 2 11 11 C 1.52996 * 109.47199 * 90.00080 * 10 9 7 12 12 H 1.09000 * 109.47077 * 60.00038 * 11 10 9 13 13 O 1.42897 * 109.47130 * 300.00214 * 11 10 9 14 14 C 1.53001 * 109.47069 * 179.97438 * 11 10 9 15 15 C 1.52996 * 109.46760 * 185.00054 * 14 11 10 16 16 O 1.42900 * 110.43818 * 62.46554 * 15 14 11 17 17 C 1.54890 * 110.49158 * 299.77433 * 15 14 11 18 18 C 1.54881 * 102.75171 * 203.38230 * 17 15 14 19 19 C 1.54268 * 104.19892 * 37.94600 * 18 17 15 20 20 C 1.53878 * 106.59363 * 336.38600 * 19 18 17 21 21 C 1.46497 * 120.00263 * 216.80026 * 9 7 2 22 22 C 1.52997 * 117.49646 * 14.51116 * 21 9 7 23 23 C 1.52998 * 117.49781 * 305.85162 * 21 9 7 24 24 H 0.97008 * 119.99546 * 354.77734 * 1 2 3 25 25 H 1.09000 * 109.47074 * 330.00116 * 10 9 7 26 26 H 1.09003 * 109.46685 * 210.00395 * 10 9 7 27 27 H 0.96703 * 113.99936 * 299.99737 * 13 11 10 28 28 H 1.09005 * 109.46723 * 65.00307 * 14 11 10 29 29 H 1.08995 * 109.46951 * 305.00277 * 14 11 10 30 30 H 0.96699 * 114.00222 * 181.84043 * 16 15 14 31 31 H 1.08998 * 110.75390 * 85.06541 * 17 15 14 32 32 H 1.09005 * 110.75601 * 321.69917 * 17 15 14 33 33 H 1.09006 * 110.48842 * 279.26372 * 18 17 15 34 34 H 1.09007 * 110.48766 * 156.62175 * 18 17 15 35 35 H 1.08995 * 110.03354 * 95.66868 * 19 18 17 36 36 H 1.09004 * 110.03471 * 217.05757 * 19 18 17 37 37 H 1.09003 * 110.03091 * 119.28466 * 20 19 18 38 38 H 1.08998 * 110.03446 * 240.66368 * 20 19 18 39 39 H 1.09003 * 115.55098 * 160.17472 * 21 9 7 40 40 H 1.09004 * 117.50156 * 0.02562 * 22 21 9 41 41 H 1.08998 * 117.49690 * 145.01996 * 22 21 9 42 42 H 1.09007 * 117.49796 * 214.97506 * 23 21 9 43 43 H 1.08996 * 117.50039 * 359.97271 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6962 -1.2124 5 1 1.2854 2.7465 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0101 -1.2023 0.0005 8 1 3.0358 -1.2335 0.3375 9 7 1.3944 -2.3485 -0.4262 10 6 0.4519 -2.3001 -1.5467 11 6 1.2073 -2.5222 -2.8585 12 1 1.6955 -3.4965 -2.8362 13 8 2.1923 -1.4996 -3.0200 14 6 0.2229 -2.4722 -4.0287 15 6 0.9557 -2.8174 -5.3266 16 8 1.4698 -4.1495 -5.2703 17 6 2.0966 -1.8037 -5.5912 18 6 2.2958 -1.9055 -7.1238 19 6 0.8669 -2.0727 -7.6808 20 6 0.0149 -2.6526 -6.5381 21 6 1.6781 -3.6232 0.2378 22 6 2.3885 -3.5716 1.5919 23 6 3.1428 -4.0511 0.3491 24 1 -0.4850 0.8367 0.0765 25 1 -0.0362 -1.3257 -1.5691 26 1 -0.2994 -3.0801 -1.4235 27 1 1.8285 -0.6041 -3.0484 28 1 -0.1997 -1.4704 -4.1054 29 1 -0.5778 -3.1925 -3.8609 30 1 1.9685 -4.4122 -6.0561 31 1 3.0040 -2.0970 -5.0634 32 1 1.7919 -0.7964 -5.3073 33 1 2.9062 -2.7737 -7.3724 34 1 2.7517 -0.9940 -7.5106 35 1 0.4704 -1.1051 -7.9882 36 1 0.8741 -2.7592 -8.5275 37 1 -0.7951 -1.9664 -6.2911 38 1 -0.3922 -3.6206 -6.8301 39 1 0.9348 -4.4064 0.0890 40 1 2.6445 -2.5892 1.9889 41 1 2.1129 -4.3212 2.3336 42 1 3.3631 -5.1160 0.2739 43 1 3.8953 -3.3845 -0.0720 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878033576.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:50 Heat of formation + Delta-G solvation = -85.920849 kcal Electronic energy + Delta-G solvation = -22297.852509 eV Core-core repulsion = 19150.111543 eV Total energy + Delta-G solvation = -3147.740966 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.57280 -38.94654 -37.41077 -35.35979 -34.98655 -32.87751 -31.88600 -29.59165 -28.88009 -26.51615 -24.79827 -22.95109 -22.38980 -21.61378 -21.25469 -20.97238 -18.39426 -17.85938 -17.37314 -16.83029 -16.39401 -16.14817 -16.04258 -15.43978 -15.20168 -14.97992 -14.68104 -14.44879 -14.08216 -13.60234 -13.14880 -13.03301 -12.78616 -12.64960 -12.59471 -12.33215 -12.27547 -12.16831 -12.05583 -11.89097 -11.80828 -11.62936 -11.45715 -11.38238 -11.26717 -10.93094 -10.69546 -10.37445 -10.28093 -8.33165 -7.76432 -5.33556 1.46502 1.49477 1.56920 2.52019 3.18662 3.32292 3.40426 3.53100 3.69294 3.73734 3.89134 3.97972 4.21640 4.29634 4.40802 4.50261 4.55042 4.56074 4.60316 4.61580 4.74030 4.86112 4.88284 4.94358 4.94698 5.01365 5.05400 5.07948 5.11900 5.20666 5.32243 5.37444 5.45679 5.46945 5.53548 5.54630 5.73078 5.82642 6.52619 6.95424 7.05610 7.23715 7.90518 8.42746 9.19263 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018410 B = 0.006451 C = 0.005423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.569677 B = 4339.143526 C = 5161.998003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.030 4.030 3 Si 0.950 3.050 4 H -0.275 1.275 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.231 4.231 8 H 0.040 0.960 9 N -0.558 5.558 10 C 0.118 3.882 11 C 0.112 3.888 12 H 0.068 0.932 13 O -0.552 6.552 14 C -0.129 4.129 15 C 0.136 3.864 16 O -0.569 6.569 17 C -0.133 4.133 18 C -0.130 4.130 19 C -0.120 4.120 20 C -0.150 4.150 21 C 0.100 3.900 22 C -0.193 4.193 23 C -0.206 4.206 24 H 0.252 0.748 25 H 0.078 0.922 26 H 0.029 0.971 27 H 0.362 0.638 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.384 0.616 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.102 0.898 40 H 0.070 0.930 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.580 -5.248 -13.996 14.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.226 4.226 3 Si 0.779 3.221 4 H -0.201 1.201 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.362 4.362 8 H 0.058 0.942 9 N -0.275 5.275 10 C -0.008 4.008 11 C 0.051 3.949 12 H 0.086 0.914 13 O -0.356 6.356 14 C -0.167 4.167 15 C 0.096 3.904 16 O -0.376 6.376 17 C -0.171 4.171 18 C -0.167 4.167 19 C -0.157 4.157 20 C -0.188 4.188 21 C -0.009 4.009 22 C -0.232 4.232 23 C -0.247 4.247 24 H 0.062 0.938 25 H 0.096 0.904 26 H 0.048 0.952 27 H 0.208 0.792 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.232 0.768 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.119 0.881 40 H 0.089 0.911 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.531 -5.587 -13.491 14.612 hybrid contribution 0.256 1.449 -0.022 1.472 sum 0.787 -4.138 -13.514 14.155 Atomic orbital electron populations 1.70000 1.06391 1.26130 1.54156 1.25580 0.95572 1.00546 1.00877 0.85621 0.77932 0.80235 0.78275 1.20100 1.21848 1.21331 1.18776 0.93276 0.85899 1.38257 0.94194 1.43376 1.49637 1.02193 1.32255 1.21676 0.91047 1.01814 0.86289 1.22202 0.89133 0.90530 0.93021 0.91394 1.86525 1.36198 1.17274 1.95612 1.22173 0.98396 1.01905 0.94228 1.21883 0.92655 0.82123 0.93756 1.86508 1.74296 1.30518 1.46320 1.23028 0.98860 0.99333 0.95881 1.22471 0.97209 1.02324 0.94722 1.22124 0.94574 1.01475 0.97554 1.22868 0.98669 1.02091 0.95141 1.21411 0.92941 0.90333 0.96175 1.23059 1.06758 1.01543 0.91840 1.23262 0.98061 1.00260 1.03073 0.93839 0.90419 0.95214 0.79204 0.90426 0.91148 0.76779 0.91990 0.91664 0.90897 0.91108 0.91374 0.90401 0.90990 0.90624 0.88067 0.91139 0.87968 0.87942 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.82 11.39 21.65 0.25 -51.57 16 2 C -0.03 -1.59 4.97 84.86 0.42 -1.17 16 3 Si 0.95 44.16 29.61 68.60 2.03 46.20 16 4 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 6 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 7 C -0.23 -12.54 7.42 84.04 0.62 -11.92 16 8 H 0.04 2.28 7.16 -2.91 -0.02 2.26 16 9 N -0.56 -27.81 2.74 -678.02 -1.86 -29.66 16 10 C 0.12 5.40 5.05 86.38 0.44 5.84 16 11 C 0.11 4.42 3.14 30.59 0.10 4.52 16 12 H 0.07 2.93 7.66 -2.39 -0.02 2.91 16 13 O -0.55 -22.90 9.56 -148.98 -1.42 -24.32 16 14 C -0.13 -4.09 4.21 30.59 0.13 -3.96 16 15 C 0.14 3.64 0.93 -9.72 -0.01 3.63 16 16 O -0.57 -15.81 12.51 -148.98 -1.86 -17.67 16 17 C -0.13 -3.53 4.27 31.88 0.14 -3.39 16 18 C -0.13 -2.52 6.52 31.67 0.21 -2.32 16 19 C -0.12 -2.07 6.80 31.32 0.21 -1.86 16 20 C -0.15 -3.15 6.11 31.32 0.19 -2.96 16 21 C 0.10 4.41 6.61 44.99 0.30 4.71 16 22 C -0.19 -7.91 9.81 30.62 0.30 -7.61 16 23 C -0.21 -8.16 10.08 30.62 0.31 -7.85 16 24 H 0.25 13.80 8.32 -92.70 -0.77 13.03 16 25 H 0.08 3.97 5.45 -2.39 -0.01 3.95 16 26 H 0.03 1.32 8.04 -2.39 -0.02 1.30 16 27 H 0.36 14.55 8.81 -74.06 -0.65 13.90 16 28 H 0.08 2.40 8.08 -2.38 -0.02 2.38 16 29 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.38 7.61 8.46 -74.06 -0.63 6.99 16 31 H 0.06 1.97 7.26 -2.39 -0.02 1.95 16 32 H 0.06 1.82 7.52 -2.38 -0.02 1.81 16 33 H 0.07 1.25 7.87 -2.38 -0.02 1.23 16 34 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.07 1.52 7.80 -2.39 -0.02 1.50 16 38 H 0.08 1.49 8.07 -2.39 -0.02 1.47 16 39 H 0.10 4.08 8.10 -2.39 -0.02 4.06 16 40 H 0.07 3.27 6.95 -2.38 -0.02 3.26 16 41 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 42 H 0.10 3.40 8.14 -2.38 -0.02 3.38 16 43 H 0.06 2.80 7.97 -2.39 -0.02 2.78 16 Total: -1.00 -61.50 335.41 0.20 -61.30 By element: Atomic # 1 Polarization: 40.36 SS G_CDS: -0.28 Total: 40.08 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: 3.35 Total: -24.34 kcal Atomic # 7 Polarization: -79.63 SS G_CDS: -1.61 Total: -81.24 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -3.29 Total: -41.99 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.20 kcal Total: -61.50 0.20 -61.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878033576.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.622 kcal (2) G-P(sol) polarization free energy of solvation -61.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds