Wall clock time and date at job start Mon Mar 30 2020 01:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 119.99981 * 2 1 4 4 H 1.48498 * 109.46689 * 270.00062 * 3 2 1 5 5 H 1.48500 * 109.46932 * 29.99982 * 3 2 1 6 6 H 1.48498 * 109.46968 * 149.99885 * 3 2 1 7 7 C 1.38810 * 120.00129 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00346 * 200.53348 * 7 2 1 9 9 N 1.36938 * 120.00275 * 20.53772 * 7 2 1 10 10 C 1.46504 * 119.99601 * 38.13884 * 9 7 2 11 11 C 1.52999 * 109.46809 * 90.00934 * 10 9 7 12 12 H 1.09000 * 109.47052 * 304.99774 * 11 10 9 13 13 O 1.42901 * 109.47514 * 64.99213 * 11 10 9 14 14 C 1.52998 * 109.47501 * 184.99697 * 11 10 9 15 15 C 1.52996 * 109.47530 * 174.99604 * 14 11 10 16 16 O 1.42896 * 110.43523 * 300.70496 * 15 14 11 17 17 C 1.54889 * 110.48406 * 63.24242 * 15 14 11 18 18 C 1.55235 * 102.58901 * 156.67628 * 17 15 14 19 19 C 1.54272 * 104.23121 * 322.08427 * 18 17 15 20 20 C 1.53869 * 106.59820 * 23.61286 * 19 18 17 21 21 C 1.46496 * 120.00316 * 218.14845 * 9 7 2 22 22 C 1.53002 * 117.49505 * 13.72818 * 21 9 7 23 23 C 1.53002 * 60.00152 * 252.51171 * 22 21 9 24 24 H 0.97000 * 119.99990 * 354.98585 * 1 2 3 25 25 H 1.08993 * 109.47496 * 330.00590 * 10 9 7 26 26 H 1.09000 * 109.47182 * 210.00252 * 10 9 7 27 27 H 0.96701 * 113.99591 * 60.00064 * 13 11 10 28 28 H 1.09003 * 109.46904 * 54.99763 * 14 11 10 29 29 H 1.09001 * 109.47098 * 294.99974 * 14 11 10 30 30 H 0.96705 * 113.99918 * 179.97438 * 16 15 14 31 31 H 1.08998 * 110.75843 * 275.06601 * 17 15 14 32 32 H 1.09004 * 110.75867 * 38.44207 * 17 15 14 33 33 H 1.08998 * 110.47187 * 203.39384 * 18 17 15 34 34 H 1.08997 * 110.58407 * 80.82961 * 18 17 15 35 35 H 1.08996 * 110.03273 * 264.32097 * 19 18 17 36 36 H 1.08997 * 110.02940 * 142.89449 * 19 18 17 37 37 H 1.09001 * 110.02906 * 240.71965 * 20 19 18 38 38 H 1.08997 * 110.03720 * 119.28173 * 20 19 18 39 39 H 1.08999 * 115.55445 * 159.43109 * 21 9 7 40 40 H 1.09003 * 117.50430 * 0.02562 * 22 21 9 41 41 H 1.09004 * 117.49684 * 145.02526 * 22 21 9 42 42 H 1.09000 * 117.49469 * 252.51480 * 23 22 21 43 43 H 1.08995 * 117.49660 * 107.48561 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0388 -1.2320 0.3275 9 7 1.3909 -2.3502 -0.4171 10 6 0.4609 -2.3117 -1.5484 11 6 1.2289 -2.5586 -2.8485 12 1 2.0439 -1.8396 -2.9311 13 8 1.7622 -3.8843 -2.8423 14 6 0.2821 -2.3953 -4.0391 15 6 1.0748 -2.5187 -5.3419 16 8 2.0950 -1.5200 -5.4017 17 6 1.6929 -3.9333 -5.4683 18 6 1.8962 -4.0780 -7.0004 19 6 0.6565 -3.3948 -7.6138 20 6 0.1342 -2.4033 -6.5593 21 6 1.6581 -3.6169 0.2686 22 6 2.3706 -3.5514 1.6211 23 6 3.1172 -4.0620 0.3871 24 1 -0.4850 0.8368 0.0734 25 1 -0.0199 -1.3344 -1.5904 26 1 -0.2973 -3.0845 -1.4220 27 1 1.0918 -4.5776 -2.7709 28 1 -0.1925 -1.4150 -3.9941 29 1 -0.4827 -3.1711 -4.0042 30 1 2.6295 -1.5515 -6.2069 31 1 2.6464 -3.9866 -4.9428 32 1 1.0029 -4.6910 -5.0968 33 1 1.9307 -5.1302 -7.2827 34 1 2.8072 -3.5694 -7.3158 35 1 -0.1077 -4.1391 -7.8374 36 1 0.9355 -2.8610 -8.5222 37 1 -0.8835 -2.6666 -6.2710 38 1 0.1598 -1.3884 -6.9559 39 1 0.9046 -4.3928 0.1335 40 1 2.6401 -2.5658 2.0008 41 1 2.0858 -4.2843 2.3760 42 1 3.3234 -5.1308 0.3302 43 1 3.8781 -3.4124 -0.0453 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878033577.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:53 Heat of formation + Delta-G solvation = -68.655354 kcal Electronic energy + Delta-G solvation = -22217.687649 eV Core-core repulsion = 19070.695371 eV Total energy + Delta-G solvation = -3146.992278 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.42635 -37.27086 -35.86777 -34.30776 -33.23593 -31.20098 -30.26279 -28.65228 -27.32601 -24.89309 -23.22990 -21.20520 -20.89105 -20.28493 -19.96845 -19.67244 -16.75259 -16.59793 -15.70182 -15.48630 -14.99045 -14.46093 -14.29886 -14.07649 -13.83321 -13.61018 -13.43381 -13.24621 -12.45260 -12.08378 -11.73667 -11.58499 -11.35555 -11.11867 -11.01505 -10.98979 -10.77300 -10.69983 -10.53316 -10.46624 -10.37403 -10.23164 -10.08013 -9.92115 -9.56060 -9.40512 -9.18696 -8.88417 -8.39194 -6.35581 -5.76371 -3.33177 3.39054 3.46119 3.48287 4.43507 4.47177 4.60563 4.67891 4.86256 5.08831 5.15248 5.29505 5.42595 5.43470 5.45215 5.54027 5.61633 5.69005 5.84581 5.85702 5.89289 5.99434 6.03277 6.10794 6.23752 6.29338 6.31422 6.39767 6.48697 6.51185 6.57450 6.63158 6.63963 6.76426 7.13520 7.29623 7.30693 7.55375 7.87262 7.95490 8.48476 8.57197 9.22047 9.84641 10.42278 11.22622 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018648 B = 0.006289 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.170072 B = 4451.179640 C = 5351.590175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.014 3.986 3 Si 0.898 3.102 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.254 4.254 8 H 0.060 0.940 9 N -0.543 5.543 10 C 0.122 3.878 11 C 0.092 3.908 12 H 0.102 0.898 13 O -0.553 6.553 14 C -0.133 4.133 15 C 0.136 3.864 16 O -0.547 6.547 17 C -0.135 4.135 18 C -0.135 4.135 19 C -0.126 4.126 20 C -0.156 4.156 21 C 0.140 3.860 22 C -0.205 4.205 23 C -0.216 4.216 24 H 0.256 0.744 25 H 0.101 0.899 26 H 0.024 0.976 27 H 0.351 0.649 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.367 0.633 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.267 -7.802 -12.344 14.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.186 4.186 3 Si 0.728 3.272 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.384 4.384 8 H 0.078 0.922 9 N -0.258 5.258 10 C -0.005 4.005 11 C 0.031 3.969 12 H 0.120 0.880 13 O -0.356 6.356 14 C -0.171 4.171 15 C 0.095 3.905 16 O -0.352 6.352 17 C -0.172 4.172 18 C -0.173 4.173 19 C -0.163 4.163 20 C -0.194 4.194 21 C 0.030 3.970 22 C -0.244 4.244 23 C -0.257 4.257 24 H 0.066 0.934 25 H 0.119 0.881 26 H 0.042 0.958 27 H 0.195 0.805 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.213 0.787 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.114 0.886 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.121 -7.117 -11.866 13.837 hybrid contribution 0.061 0.477 -0.545 0.727 sum -0.060 -6.640 -12.410 14.075 Atomic orbital electron populations 1.69888 1.05559 1.25995 1.51995 1.25204 0.95105 0.98655 0.99642 0.86359 0.79424 0.83461 0.77978 1.21055 1.21756 1.20256 1.18944 0.94067 0.84846 1.40521 0.92193 1.43183 1.50213 1.02300 1.30120 1.21626 0.90828 1.02885 0.85115 1.22706 0.97226 0.83747 0.93234 0.87994 1.86638 1.37076 1.15467 1.96451 1.22242 0.98087 1.02703 0.94066 1.21931 0.87108 0.87428 0.94013 1.86631 1.48374 1.55195 1.44967 1.23197 1.02961 0.96882 0.94193 1.22546 0.97515 1.00344 0.96904 1.22147 0.97839 0.98280 0.98079 1.22951 1.00350 0.99772 0.96351 1.20959 0.91370 0.90406 0.94261 1.23117 1.07634 1.01900 0.91730 1.23234 1.00189 0.98637 1.03653 0.93408 0.88119 0.95775 0.80460 0.90755 0.91266 0.78733 0.89267 0.91052 0.91837 0.92020 0.92008 0.92247 0.91033 0.91249 0.90042 0.88558 0.91137 0.91270 0.89907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.46 11.45 55.49 0.64 -24.82 16 2 C 0.01 0.39 4.97 -17.43 -0.09 0.30 16 3 Si 0.90 21.98 29.61 -169.99 -5.03 16.95 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.25 -6.96 8.04 -15.06 -0.12 -7.08 16 8 H 0.06 1.69 7.24 -52.49 -0.38 1.31 16 9 N -0.54 -13.46 2.74 -165.66 -0.45 -13.91 16 10 C 0.12 2.76 4.99 -4.04 -0.02 2.74 16 11 C 0.09 1.79 3.11 -26.73 -0.08 1.71 16 12 H 0.10 2.42 7.56 -51.93 -0.39 2.02 16 13 O -0.55 -9.81 9.99 -35.23 -0.35 -10.17 16 14 C -0.13 -2.14 4.17 -26.73 -0.11 -2.25 16 15 C 0.14 1.91 0.93 -88.96 -0.08 1.83 16 16 O -0.55 -8.67 12.37 -35.23 -0.44 -9.10 16 17 C -0.13 -1.71 4.37 -24.55 -0.11 -1.82 16 18 C -0.14 -1.39 6.53 -24.88 -0.16 -1.56 16 19 C -0.13 -1.24 6.80 -25.61 -0.17 -1.42 16 20 C -0.16 -1.83 6.09 -25.61 -0.16 -1.99 16 21 C 0.14 3.08 6.21 -67.93 -0.42 2.65 16 22 C -0.20 -4.31 9.81 -26.73 -0.26 -4.57 16 23 C -0.22 -4.41 10.09 -26.73 -0.27 -4.68 16 24 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 25 H 0.10 2.61 5.52 -51.93 -0.29 2.32 16 26 H 0.02 0.51 8.04 -51.93 -0.42 0.09 16 27 H 0.35 5.10 8.90 45.56 0.41 5.50 16 28 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.37 4.35 8.48 45.56 0.39 4.74 16 31 H 0.09 1.33 7.21 -51.93 -0.37 0.96 16 32 H 0.07 0.87 7.76 -51.93 -0.40 0.46 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.60 7.89 -51.93 -0.41 0.19 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.81 7.84 -51.93 -0.41 0.40 16 38 H 0.07 0.82 8.07 -51.93 -0.42 0.40 16 39 H 0.08 1.65 8.10 -51.93 -0.42 1.23 16 40 H 0.10 2.24 6.95 -51.93 -0.36 1.88 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 42 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.08 1.85 8.02 -51.93 -0.42 1.43 16 LS Contribution 336.49 15.07 5.07 5.07 Total: -1.00 -29.88 336.49 -8.62 -38.50 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -5.99 Total: 13.63 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -2.06 Total: -16.14 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.18 Total: -38.74 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.79 Total: -19.27 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.88 -8.62 -38.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878033577.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.158 kcal (2) G-P(sol) polarization free energy of solvation -29.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds