Wall clock time and date at job start Mon Mar 30 2020 01:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 119.99981 * 2 1 4 4 H 1.48498 * 109.46689 * 270.00062 * 3 2 1 5 5 H 1.48500 * 109.46932 * 29.99982 * 3 2 1 6 6 H 1.48498 * 109.46968 * 149.99885 * 3 2 1 7 7 C 1.38810 * 120.00129 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00346 * 200.53348 * 7 2 1 9 9 N 1.36938 * 120.00275 * 20.53772 * 7 2 1 10 10 C 1.46504 * 119.99601 * 38.13884 * 9 7 2 11 11 C 1.52999 * 109.46809 * 90.00934 * 10 9 7 12 12 H 1.09000 * 109.47052 * 304.99774 * 11 10 9 13 13 O 1.42901 * 109.47514 * 64.99213 * 11 10 9 14 14 C 1.52998 * 109.47501 * 184.99697 * 11 10 9 15 15 C 1.52996 * 109.47530 * 174.99604 * 14 11 10 16 16 O 1.42896 * 110.43523 * 300.70496 * 15 14 11 17 17 C 1.54889 * 110.48406 * 63.24242 * 15 14 11 18 18 C 1.55235 * 102.58901 * 156.67628 * 17 15 14 19 19 C 1.54272 * 104.23121 * 322.08427 * 18 17 15 20 20 C 1.53869 * 106.59820 * 23.61286 * 19 18 17 21 21 C 1.46496 * 120.00316 * 218.14845 * 9 7 2 22 22 C 1.53002 * 117.49505 * 13.72818 * 21 9 7 23 23 C 1.53002 * 60.00152 * 252.51171 * 22 21 9 24 24 H 0.97000 * 119.99990 * 354.98585 * 1 2 3 25 25 H 1.08993 * 109.47496 * 330.00590 * 10 9 7 26 26 H 1.09000 * 109.47182 * 210.00252 * 10 9 7 27 27 H 0.96701 * 113.99591 * 60.00064 * 13 11 10 28 28 H 1.09003 * 109.46904 * 54.99763 * 14 11 10 29 29 H 1.09001 * 109.47098 * 294.99974 * 14 11 10 30 30 H 0.96705 * 113.99918 * 179.97438 * 16 15 14 31 31 H 1.08998 * 110.75843 * 275.06601 * 17 15 14 32 32 H 1.09004 * 110.75867 * 38.44207 * 17 15 14 33 33 H 1.08998 * 110.47187 * 203.39384 * 18 17 15 34 34 H 1.08997 * 110.58407 * 80.82961 * 18 17 15 35 35 H 1.08996 * 110.03273 * 264.32097 * 19 18 17 36 36 H 1.08997 * 110.02940 * 142.89449 * 19 18 17 37 37 H 1.09001 * 110.02906 * 240.71965 * 20 19 18 38 38 H 1.08997 * 110.03720 * 119.28173 * 20 19 18 39 39 H 1.08999 * 115.55445 * 159.43109 * 21 9 7 40 40 H 1.09003 * 117.50430 * 0.02562 * 22 21 9 41 41 H 1.09004 * 117.49684 * 145.02526 * 22 21 9 42 42 H 1.09000 * 117.49469 * 252.51480 * 23 22 21 43 43 H 1.08995 * 117.49660 * 107.48561 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0388 -1.2320 0.3275 9 7 1.3909 -2.3502 -0.4171 10 6 0.4609 -2.3117 -1.5484 11 6 1.2289 -2.5586 -2.8485 12 1 2.0439 -1.8396 -2.9311 13 8 1.7622 -3.8843 -2.8423 14 6 0.2821 -2.3953 -4.0391 15 6 1.0748 -2.5187 -5.3419 16 8 2.0950 -1.5200 -5.4017 17 6 1.6929 -3.9333 -5.4683 18 6 1.8962 -4.0780 -7.0004 19 6 0.6565 -3.3948 -7.6138 20 6 0.1342 -2.4033 -6.5593 21 6 1.6581 -3.6169 0.2686 22 6 2.3706 -3.5514 1.6211 23 6 3.1172 -4.0620 0.3871 24 1 -0.4850 0.8368 0.0734 25 1 -0.0199 -1.3344 -1.5904 26 1 -0.2973 -3.0845 -1.4220 27 1 1.0918 -4.5776 -2.7709 28 1 -0.1925 -1.4150 -3.9941 29 1 -0.4827 -3.1711 -4.0042 30 1 2.6295 -1.5515 -6.2069 31 1 2.6464 -3.9866 -4.9428 32 1 1.0029 -4.6910 -5.0968 33 1 1.9307 -5.1302 -7.2827 34 1 2.8072 -3.5694 -7.3158 35 1 -0.1077 -4.1391 -7.8374 36 1 0.9355 -2.8610 -8.5222 37 1 -0.8835 -2.6666 -6.2710 38 1 0.1598 -1.3884 -6.9559 39 1 0.9046 -4.3928 0.1335 40 1 2.6401 -2.5658 2.0008 41 1 2.0858 -4.2843 2.3760 42 1 3.3234 -5.1308 0.3302 43 1 3.8781 -3.4124 -0.0453 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878033577.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:52 Heat of formation + Delta-G solvation = -89.187740 kcal Electronic energy + Delta-G solvation = -22218.578000 eV Core-core repulsion = 19070.695371 eV Total energy + Delta-G solvation = -3147.882629 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.56738 -38.94056 -37.41161 -35.37333 -35.13889 -32.81919 -31.92570 -29.57010 -28.84255 -26.63911 -24.79629 -22.88752 -22.34395 -21.66311 -21.26465 -20.97410 -18.45065 -17.87619 -17.34085 -16.92953 -16.35914 -16.24553 -15.96760 -15.44839 -15.23519 -14.95723 -14.66790 -14.43027 -14.13138 -13.55403 -13.24860 -13.06109 -12.77829 -12.72770 -12.68223 -12.28643 -12.21740 -12.13275 -12.04570 -11.87158 -11.84053 -11.71022 -11.50654 -11.30502 -11.23732 -10.90181 -10.67330 -10.43979 -10.35080 -8.36621 -7.81414 -5.44163 1.39367 1.43925 1.50149 2.45169 3.14870 3.35815 3.41076 3.56221 3.70128 3.74540 3.87008 3.99035 4.23795 4.34395 4.40617 4.50661 4.53932 4.57922 4.61242 4.64209 4.74129 4.80892 4.88844 4.95668 4.99332 5.02778 5.07306 5.11943 5.12645 5.21838 5.40048 5.42145 5.45077 5.55407 5.59026 5.60235 5.66025 5.73163 6.47199 6.95996 7.12207 7.20288 7.88668 8.38017 9.10312 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018648 B = 0.006289 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.170072 B = 4451.179640 C = 5351.590175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.030 4.030 3 Si 0.950 3.050 4 H -0.288 1.288 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.256 4.256 8 H 0.044 0.956 9 N -0.560 5.560 10 C 0.123 3.877 11 C 0.117 3.883 12 H 0.054 0.946 13 O -0.554 6.554 14 C -0.128 4.128 15 C 0.130 3.870 16 O -0.576 6.576 17 C -0.129 4.129 18 C -0.130 4.130 19 C -0.119 4.119 20 C -0.152 4.152 21 C 0.119 3.881 22 C -0.204 4.204 23 C -0.197 4.197 24 H 0.253 0.747 25 H 0.067 0.933 26 H 0.040 0.960 27 H 0.370 0.630 28 H 0.052 0.948 29 H 0.095 0.905 30 H 0.381 0.619 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.106 0.894 40 H 0.066 0.934 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.469 -9.745 -13.641 16.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.228 4.228 3 Si 0.778 3.222 4 H -0.215 1.215 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.387 4.387 8 H 0.061 0.939 9 N -0.276 5.276 10 C -0.003 4.003 11 C 0.055 3.945 12 H 0.072 0.928 13 O -0.359 6.359 14 C -0.166 4.166 15 C 0.090 3.910 16 O -0.384 6.384 17 C -0.167 4.167 18 C -0.167 4.167 19 C -0.156 4.156 20 C -0.189 4.189 21 C 0.011 3.989 22 C -0.242 4.242 23 C -0.237 4.237 24 H 0.063 0.937 25 H 0.084 0.916 26 H 0.058 0.942 27 H 0.217 0.783 28 H 0.071 0.929 29 H 0.114 0.886 30 H 0.230 0.770 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.124 0.876 40 H 0.084 0.916 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.312 -9.089 -13.172 16.006 hybrid contribution 0.160 1.005 -0.106 1.023 sum -0.153 -8.084 -13.278 15.546 Atomic orbital electron populations 1.69993 1.06441 1.26243 1.53293 1.25755 0.95805 1.01034 1.00192 0.85547 0.78571 0.80529 0.77533 1.21498 1.21305 1.19830 1.18965 0.93527 0.86347 1.39877 0.93870 1.43358 1.50388 1.02630 1.31263 1.21603 0.91145 1.01514 0.86086 1.22063 0.95506 0.83736 0.93161 0.92827 1.86602 1.37841 1.15038 1.96425 1.22182 0.98070 1.02421 0.93946 1.22018 0.87255 0.87965 0.93805 1.86591 1.49276 1.56122 1.46374 1.23078 1.01604 0.95954 0.96021 1.22520 0.98025 1.01431 0.94758 1.22114 0.97783 0.98033 0.97686 1.22881 1.00018 1.00343 0.95701 1.21254 0.92887 0.89900 0.94896 1.23107 1.07497 1.01338 0.92291 1.23139 0.98249 0.99920 1.02418 0.93718 0.91556 0.94199 0.78344 0.92885 0.88614 0.77023 0.91833 0.90174 0.90401 0.91616 0.90685 0.90993 0.90462 0.91662 0.87621 0.91572 0.88006 0.87909 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.70 11.45 21.65 0.25 -53.45 16 2 C -0.03 -1.73 4.97 84.86 0.42 -1.31 16 3 Si 0.95 46.45 29.61 68.60 2.03 48.48 16 4 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.27 -13.04 7.11 99.48 0.71 -12.34 16 7 C -0.26 -14.48 8.04 84.03 0.68 -13.80 16 8 H 0.04 2.54 7.24 -2.91 -0.02 2.52 16 9 N -0.56 -28.14 2.74 -678.03 -1.86 -30.00 16 10 C 0.12 5.63 4.99 86.38 0.43 6.06 16 11 C 0.12 4.61 3.11 30.59 0.10 4.71 16 12 H 0.05 2.66 7.56 -2.39 -0.02 2.65 16 13 O -0.55 -19.10 9.99 -148.98 -1.49 -20.59 16 14 C -0.13 -4.09 4.17 30.59 0.13 -3.97 16 15 C 0.13 3.54 0.93 -9.72 -0.01 3.53 16 16 O -0.58 -18.44 12.37 -148.98 -1.84 -20.28 16 17 C -0.13 -3.03 4.37 32.01 0.14 -2.89 16 18 C -0.13 -2.30 6.53 31.79 0.21 -2.09 16 19 C -0.12 -1.95 6.80 31.32 0.21 -1.74 16 20 C -0.15 -3.25 6.09 31.32 0.19 -3.06 16 21 C 0.12 5.11 6.21 44.99 0.28 5.39 16 22 C -0.20 -8.34 9.81 30.60 0.30 -8.04 16 23 C -0.20 -7.73 10.09 30.60 0.31 -7.43 16 24 H 0.25 14.38 8.32 -92.71 -0.77 13.61 16 25 H 0.07 3.56 5.52 -2.39 -0.01 3.55 16 26 H 0.04 1.66 8.04 -2.39 -0.02 1.64 16 27 H 0.37 9.83 8.90 -74.06 -0.66 9.17 16 28 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.38 8.96 8.48 -74.05 -0.63 8.34 16 31 H 0.06 1.84 7.21 -2.39 -0.02 1.82 16 32 H 0.08 1.72 7.76 -2.39 -0.02 1.71 16 33 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.07 1.11 7.89 -2.39 -0.02 1.10 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.08 1.56 7.84 -2.39 -0.02 1.55 16 38 H 0.06 1.45 8.07 -2.39 -0.02 1.43 16 39 H 0.11 4.00 8.10 -2.39 -0.02 3.98 16 40 H 0.07 3.12 6.95 -2.39 -0.02 3.10 16 41 H 0.10 3.50 8.14 -2.38 -0.02 3.48 16 42 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 43 H 0.06 2.53 8.02 -2.39 -0.02 2.51 16 Total: -1.00 -66.36 336.49 0.18 -66.19 By element: Atomic # 1 Polarization: 34.59 SS G_CDS: -0.29 Total: 34.29 kcal Atomic # 6 Polarization: -28.01 SS G_CDS: 3.38 Total: -24.63 kcal Atomic # 7 Polarization: -81.84 SS G_CDS: -1.61 Total: -83.46 kcal Atomic # 8 Polarization: -37.54 SS G_CDS: -3.33 Total: -40.87 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -66.36 0.18 -66.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878033577.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.000 kcal (2) G-P(sol) polarization free energy of solvation -66.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds